BAC Information

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BAC

Clone NameB6Ng01-008N13
Chromosome3 (Build37)
Map Location 54,769,723 - 54,940,299
singlet/doubletdoublet
Overlap geneCcna1, 4931419H13Rik, Spg20
Upstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
Downstream geneA730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N13.bB6Ng01-008N13.g
ACCDH844967DH844968
length1,163900
definitionDH844967|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N13, 5' end.DH844968|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,939,111 - 54,940,299)(54,769,723 - 54,770,625)
sequence
gaattcataaaaattcattctatcaaaaaattccctagcctcagtcataa
agacttaaagaagcatttcttccgtttaaatcgcaaggccattttggttt
cctagtaggcagaagagctagcgaataagaggaacattgcagagcgtcaa
ggcactttcatgaccaagctcatccctgttggagaaagagttctaaagca
ttatctgagaacaaactttaagatcacagttttgtttagcttatctgctg
aaaatcctgttgggcatctcaaaagagccacaattagtgcaaaaggaagg
cgtcagtcgacattaagtcctttccggtattcccagaactcaggtggctg
tgaaatcacgtgcacagcttcctactttgctttctgaaggcagcacatac
aaaaataggttgacattaggtttaaaccacatatatattataagctttat
tgtaactgcaaaaatagtttagccacatttaagggaaaataaacttactg
agactacaaactgcatatgttagaagccagatgtaagaacactgattatt
ttccttgtaagtggatacatgccccaaacttccaacagtcactctgtaga
aatgaacagacagaagacgctgttctgtggagaatctccgtccgctcaca
ccctccgtctgctaaggctttggtgcaggtgactcccaggattctcatta
tttgtccttctttcctgcccctggcttctcttcctccacctgctttccta
tgtctcttctcccttctgtgcttgtggctcctccctgactctccctctga
gggcgctcaacgatctggtagtcctcgaggagagtgtgtcccgtctgctt
ggcagttttcttcaccatggctttgatgccgatgttgtcaatattgtagg
cagtgagcccaacattgatagctgatccactgcgttatgtgtagcttctc
ctgcgttgtgcccatacctttaaaaaggtgaaagtttaacatgacataga
acacatagatattctaaagatttcttctgaatcaatagataagttatatg
ttgtctgtggccatttcttgaagcaactgagcctagatttcaatttgtat
aactgagacattggaggagaaaactcggctatagctgcatctcctctgtt
gcaactgtgtgtg
gaattccatggtctttttgtaggttcaaattgctattcacatctgtcagc
ctttgcttacaaaatgatcactcacctctccagggagaagccagctattt
ctaggcaaggtgcctgtcaccttgaagaaaatattttaaacccatcaagg
aaataaagggagagtgttagacaagtgtaagaaacacaagatggttttaa
ttttcaaaaatcactaactagtccggtcattgcaggaaacccctggaatc
caaatattatttcatattagtatgacttttagacctgaattctaaataaa
agatttgtctctttaaaaacagaaagctaatcattgtatactttgtgtag
tctgtgtctttattaaggaagaaccttgtatttttattaagaaagaactt
agtatttcagtatttgtctcctgggtggctgttaccaatgagtggtgtct
tagctctctcttagccgaagacaccttctagcattgtttgaagtcctctt
tatgagagttaaggaaagcagagtcagtaaccaaggggtgtagtttgttt
cgctgagcagatcatatatccgttgttcctgttgtgtgtgcccttcccat
atgcatttgattttaattatacaaactcccaatatatgcataagatggtt
ggtatatagaggggtttccttgaaaggttagtagagggcactgtttgtat
tatgaacacaatattcaaagccagttcaggtccaaccagcccttccaggc
tgtatctggatgcagtcagaatatatttgaataacaaccctgtaatttga
atgtcagctgggacagagaaactcatactattaaagatgggagttcttat
agtctattgcagtagcaggaagagtgatgctgaggttgctaggtgcatgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54939111_54940299
seq2: B6Ng01-008N13.b_46_1208 (reverse)

seq1  CACACACAGTTTTTGCTAACAG-GGAGAATGCAGCTTTGTAGCCGTAGTT  49
      |||||||||   |||| ||||| |||| |||||||  | |||||| ||||
seq2  CACACACAG---TTGC-AACAGAGGAG-ATGCAGC--TATAGCCG-AGTT  42

seq1  TTTTCTTCTCTCCTATGTCTTCAGTTATTAACTAAATTGAAATCTAGGCT  99
      || ||    |||| ||||| ||||||||  || |||||||||||||||| 
seq2  TTCTC----CTCCAATGTC-TCAGTTAT--AC-AAATTGAAATCTAGGC-  83

seq1  TCAGTTTTGCTTTCAAGAAATGG-CACAGACATCATATAACTTATCCTAT  148
      ||||  |||| |||||||||||| |||||||| |||||||||||| ||||
seq2  TCAG--TTGC-TTCAAGAAATGGCCACAGACAACATATAACTTAT-CTAT  129

seq1  TGATTTCAGAAGAAAATTCTTTAGATATA-CTATGTGTTCTAATGTCATT  197
      ||| |||||||||||  |||||||| ||| ||||||||||| |||||| |
seq2  TGA-TTCAGAAGAAA--TCTTTAGA-ATATCTATGTGTTCT-ATGTCA-T  173

seq1  GTTATACTTTCACCTTTTTTAAAGGTATGGGCACAACGCAGGAGAAGCTA  247
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTTCACC-TTTTTAAAGGTATGGGCACAACGCAGGAGAAGCTA  222

seq1  CACATAACGCAGTGGATTCAGCTATCAATGTTGGGCTCACTGCCTACAAT  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACATAACGCAGTGGA-TCAGCTATCAATGTTGGGCTCACTGCCTACAAT  271

seq1  ATTGACAACATCGGCATCAAAGCCATGGTGAAGAAAACTGCCAAGCAGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAACATCGGCATCAAAGCCATGGTGAAGAAAACTGCCAAGCAGAC  321

seq1  GGGACACACTCTCCTCGAGGACTACCAGATCGTTGAGCGCCCTCAGAGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACACTCTCCTCGAGGACTACCAGATCGTTGAGCGCCCTCAGAGGG  371

seq1  AGAGTCAGGGAGGAGCCACAAGCACAGAAGGGAGAAGAGACATAGGAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGGGAGGAGCCACAAGCACAGAAGGGAGAAGAGACATAGGAAAG  421

seq1  CAGGTGGAGGAAGAGAAGCCAGGGGCAGGAAAGAAGGACAAATAATGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAGGAAGAGAAGCCAGGGGCAGGAAAGAAGGACAAATAATGAGA  471

seq1  ATCCTGGGAGTCACCTGCACCAAAGCCTTAGCAGACGGAGGGTGTGAGCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGAGTCACCTGCACCAAAGCCTTAGCAGACGGAGGGTGTGAGCG  521

seq1  GACGGAGATTCTCCACAGAACAGCGTCTTCTGTCTGTTCATTTCTACAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGATTCTCCACAGAACAGCGTCTTCTGTCTGTTCATTTCTACAGA  571

seq1  GTGACTGTTGGAAGTTTGGGGCATGTATCCACTTACAAGGAAAATAATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTTGGAAGTTTGGGGCATGTATCCACTTACAAGGAAAATAATCA  621

seq1  GTGTTCTTACATCTGGCTTCTAACATATGCAGTTTGTAGTCTCAGTAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTACATCTGGCTTCTAACATATGCAGTTTGTAGTCTCAGTAAGT  671

seq1  TTATTTTCCCTTAAATGTGGCTAAACTATTTTTGCAGTTACAATAAAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCCTTAAATGTGGCTAAACTATTTTTGCAGTTACAATAAAGCT  721

seq1  TATAATATATATGTGGTTTAAACCTAATGTCAACCTATTTTTGTATGTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATGTGGTTTAAACCTAATGTCAACCTATTTTTGTATGTGC  771

seq1  TGCCTTCAGAAAGCAAAGTAGGAAGCTGTGCACGTGATTTCACAGCCACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGAAAGCAAAGTAGGAAGCTGTGCACGTGATTTCACAGCCACC  821

seq1  TGAGTTCTGGGAATACCGGAAAGGACTTAATGTCGACTGACGCCTTCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGGGAATACCGGAAAGGACTTAATGTCGACTGACGCCTTCCTT  871

seq1  TTGCACTAATTGTGGCTCTTTTGAGATGCCCAACAGGATTTTCAGCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTAATTGTGGCTCTTTTGAGATGCCCAACAGGATTTTCAGCAGAT  921

seq1  AAGCTAAACAAAACTGTGATCTTAAAGTTTGTTCTCAGATAATGCTTTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAACAAAACTGTGATCTTAAAGTTTGTTCTCAGATAATGCTTTAG  971

seq1  AACTCTTTCTCCAACAGGGATGAGCTTGGTCATGAAAGTGCCTTGACGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCTCCAACAGGGATGAGCTTGGTCATGAAAGTGCCTTGACGCT  1021

seq1  CTGCAATGTTCCTCTTATTCGCTAGCTCTTCTGCCTACTAGGAAACCAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGTTCCTCTTATTCGCTAGCTCTTCTGCCTACTAGGAAACCAAA  1071

seq1  ATGGCCTTGCGATTTAAACGGAAGAAATGCTTCTTTAAGTCTTTATGACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGCGATTTAAACGGAAGAAATGCTTCTTTAAGTCTTTATGACT  1121

seq1  GAGGCTAGGGAATTTTTTGATAGAATGAATTTTTATGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGGGAATTTTTTGATAGAATGAATTTTTATGAATTC  1163

seq1: chr3_54769723_54770625
seq2: B6Ng01-008N13.g_70_969

seq1  GAATTCCATGGTCTTTTTGTAGGTTCAAATTGCTATTCACATCTGTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTCTTTTTGTAGGTTCAAATTGCTATTCACATCTGTCAGC  50

seq1  CTTTGCTTACAAAATGATCACTCACCTCTCCAGGGAGAAGCCAGCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTACAAAATGATCACTCACCTCTCCAGGGAGAAGCCAGCTATTT  100

seq1  CTAGGCAAGGTGCCTGTCACCTTGAAGAAAATATTTTAAACCCATCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAAGGTGCCTGTCACCTTGAAGAAAATATTTTAAACCCATCAAGG  150

seq1  AAATAAAGGGAGAGTGTTAGACAAGTGTAAGAAACACAAGATGGTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGGAGAGTGTTAGACAAGTGTAAGAAACACAAGATGGTTTTAA  200

seq1  TTTTCAAAAATCACTAACTAGTCCGGTCATTGCAGGAAACCCCTGGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAATCACTAACTAGTCCGGTCATTGCAGGAAACCCCTGGAATC  250

seq1  CAAATATTATTTCATATTAGTATGACTTTTAGACCTGAATTCTAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTATTTCATATTAGTATGACTTTTAGACCTGAATTCTAAATAAA  300

seq1  AGATTTGTCTCTTTAAAAACAGAAAGCTAATCATTGTATACTTTGTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCTCTTTAAAAACAGAAAGCTAATCATTGTATACTTTGTGTAG  350

seq1  TCTGTGTCTTTATTAAGGAAGAACCTTGTATTTTTATTAAGAAAGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTTTATTAAGGAAGAACCTTGTATTTTTATTAAGAAAGAACTT  400

seq1  AGTATTTCAGTATTTGTCTCCTGGGTGGCTGTTACCAATGAGTGGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCAGTATTTGTCTCCTGGGTGGCTGTTACCAATGAGTGGTGTCT  450

seq1  TAGCTCTCTCTTAGCCGAAGACACCTTCTAGCATTGTTTGAAGTCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTCTTAGCCGAAGACACCTTCTAGCATTGTTTGAAGTCCTCTT  500

seq1  TATGAGAGTTAAGGAAAGCAGAGTCAGTAACCAAGGGGTGTAGTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGTTAAGGAAAGCAGAGTCAGTAACCAAGGGGTGTAGTTTGTTT  550

seq1  CGCTGAGCAGATCATATATCCGTTGTTCCTGTTGTGTGTGCCCTTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGCAGATCATATATCCGTTGTTCCTGTTGTGTGTGCCCTTCCCAT  600

seq1  ATGCATTTGATTTTAATTATACAAACTCCCAATATATGCATAAGATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGATTTTAATTATACAAACTCCCAATATATGCATAAGATGGTT  650

seq1  GGTATATAGAGGGGTTTCCTTGAAAGGTTAGTAGAGGGCACTGTTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATAGAGGGGTTTCCTTGAAAGGTTAGTAGAGGGCACTGTTTGTAT  700

seq1  TATGAACACAATATTCAAAGCCAGTTCAGGTCCAACCAGCCCTTCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACAATATTCAAAGCCAGTTCAGGTCCAACCAGCCCTTCCAGGC  750

seq1  TGTATCTGGATGCAGTCAGAATATATTTGAATAACAACCCTGTAAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTATCTGGATGCAGTCAGAATATATTTGAATAACAACCCTGT-AATTTG  799

seq1  ATTGTCAGCTGGGACAGAGAAACTCATACTATTCAGAGATGGGAGTACAT  850
      | ||||||||||||||||||||||||||||||| | |||||||||| | |
seq2  AATGTCAGCTGGGACAGAGAAACTCATACTATT-AAAGATGGGAGTTCTT  848

seq1  ACAGCCTAATGCAAGTAGCAGGAGGAGTGATGCTGAGGTTGCTAGGTGCA  900
      | || ||| ||| |||||||||| ||||||||||||||||||||||||||
seq2  ATAGTCTATTGC-AGTAGCAGGAAGAGTGATGCTGAGGTTGCTAGGTGCA  897

seq1  TGG  903
      |||
seq2  TGG  900