BAC Information

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BAC

Clone NameB6Ng01-008O17
Chromosome3 (Build37)
Map Location 41,059,134 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008O17.bB6Ng01-008O17.g
ACCDH845013DH845014
length9611,208
definitionDH845013|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O17, 5' end.DH845014|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagtccagcttctttgtatatattggctattagtcccctatcagat
ttaagattggtaaaaatcctttcccaatctgttggtggcctttttgtctt
attgacagtgtcttttgccttacagatgctttgcaatttcatgtggtccc
atttgtcaattctcgatcttacagcacaaggcattgctgttctgtttagg
aattttccccctgtgcccatatcttcgaggctttcccccactttctcctc
tataaatttcagtgtctctggttttatgtggaggtctttgattcacttag
acctgagctttgtacaaggagataggaatggatcaattcgaattcttcta
catgataactgccagttgtgccagcaccatttgttgaaaatgctgtcttt
ttcccactggatggttttagctcccttgtcaaagatcaagtgaccatagg
tgtgtggattcatttctgggtcttcacttctattccattgatctacctgt
ctgtcgctgtaacagtaccatgcaggttttttttttccacaattgttctg
taatacagcttgaggagacaggtgattctttgagttcgaggccaacctgg
tctacagagcaaatttctagatacccagggctatgcagagaaatcctgtc
tcaaaataaataaataaataaataaatacataaataataaaagcaataaa
aaaataaaaggaaacaaaaacaaaacaaaaagagtgattatttaatgaga
agatgtatatgtagacttatattcatgcccagagaagatcttggagtttc
agaatgaaatttcccaccccagcctacacacttgatgtctccttgctctc
cttatcttcattctgcaatctatggtcaactttcagcttcaacaggcaac
cactgattcat
gaattccaaggcactggaccacagttctcatcaccagagcaaaactagta
tttcttggctggatttttaatattctatctttttaatattgcataattcc
ccttggagaagtcactccgaaaaataaaaatgaaaataaaaaaaaatcca
gacatttaataagcatttaaaattaggaattagaaacttcttgcccatta
agtcattacaggttaatgtgaataaaatggtttatgggatctgatatatc
tcctgtaagccctcattaaatatattactgctgttatggcccttctgtat
agaaaaaaaaaaaaaggtggaaatgcacccactatccccagaggctgctg
tgagtccagtggttgccttgcccttgcctggcacttacaggaagctgttg
gagtttgttttccaacgcttaccagtgtttacaaagctgctggctggtct
gctgcttacatgtcacgaggaagaaagtcttatttccatattccttaact
gtgctctatggaacattagctttgcacgatgatccaagtattctgaagaa
taattgtaggaaggacaggaatatccgtgacaggcggttcttccatgagc
agataggctctgggaaacagttaaaagcaaaagttagcagcttccttact
tgcagagtatttagagcctttaataatgtaaaatgctttgtaattctcta
agagggtgtcagcatatcatttgttttgtgcagaacacagtacaaacacg
cttgtgttctgcagaaatgcagtttagaaggagctgctttatttaatgta
gccaagtaaccaatgacaacaggctcagtagtttccagaaaagcatattt
ctcactgaaaagttccaagcaaggaacctcttcccagcaaatatatcatt
acagaagcatgaaaacgagtcatctgcaaatgattatgattttacagcag
tctggaatccataagtcaatattggatcatgtcctcttctgatgatcggt
atcaaatgtcaaaggacactgtcatatcttatatgctttgcagcagatga
acgacagtgcagtgtctatatgcccacattcccccctcagtttaaaggta
tcgaggaggagatgggaatctctatattcataaatggaacacggtgcccg
tacgaataggctctgaaagtcagtgctggtgctcaaggtaaggagtccac
atgactcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059134_41059737
seq2: B6Ng01-008O17.b_48_648 (reverse)

seq1  TACAGAGCAATTGTG-----ATAAAAACTGCATGGTACTGGTATAGTGAC  45
      |||||| ||||||||     | |||| ||||||||||||| || || |||
seq2  TACAGAACAATTGTGGAAAAAAAAAACCTGCATGGTACTGTTACAGCGAC  50

seq1  AGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACA  95
      ||||| | ||| ||||||||||||| ||||||| |||||| |||||||||
seq2  AGACAGGTAGATCAATGGAATAGAAGTGAAGACCCAGAAATGAATCCACA  100

seq1  CACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGA  145
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGG  150

seq1  AAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCA  195
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGTTATCA  200

seq1  TGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAA  245
      ||||||||||| |||||||||||| |||||||||||||||| ||| ||| 
seq2  TGTAGAAGAATTCGAATTGATCCATTCCTATCTCCTTGTACAAAGCTCAG  250

seq1  ATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTA  295
       |||||||| ||||| || | ||||||||||||||||||||||||| |||
seq2  GTCTAAGTGAATCAAAGACCTCCACATAAAACCAGAGACACTGAAATTTA  300

seq1  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAA  345
      ||||||||||||||||| ||||||| |||||||||| |||||||| ||||
seq2  TAGAGGAGAAAGTGGGGGAAAGCCTCGAAGATATGGGCACAGGGGGAAAA  350

seq1  TTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAA  395
      |||||  | |||||||||||| ||||||||||||||| |||||| |||||
seq2  TTCCTAAACAGAACAGCAATGCCTTGTGCTGTAAGATCGAGAATTGACAA  400

seq1  ATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCA  445
      |||||||| ||||||| |||||||| |||| |||||||||||||| ||||
seq2  ATGGGACCACATGAAATTGCAAAGCATCTGTAAGGCAAAAGACACTGTCA  450

seq1  ATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCT  494
      |||||||||||||| |||||||||||||||||||||| |||||| ||| |
seq2  ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATTTTTACCAATCTT  500

seq1  AAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGT  544
      ||||| ||||||||||||||| |||||||||| ||       |||||| |
seq2  AAATCTGATAGGGGACTAATAGCCAATATATA-CA-------AAGAAGCT  542

seq1  GGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAA  594
      ||| |||||||| ||||||||||||||| ||||||||||  |||||||||
seq2  GGACTCCAGAAATTCAAATAACCCCATT-AAAAATGGGGTACAGAGCTAA  591

seq1  ACAAAGAATT  604
      ||||||||||
seq2  ACAAAGAATT  601