BAC Information

Click to search

BAC

Clone NameB6Ng01-009H16
Chromosome3 (Build37)
Map Location 78,978,424 - 79,141,483
singlet/doubletdoublet
Overlap geneRapgef2, LOC100041741
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H16.bB6Ng01-009H16.g
ACCDH845407DH845408
length1,109962
definitionDH845407|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H16, 5' end.DH845408|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,978,424 - 78,979,531)(79,140,521 - 79,141,483)
sequence
gaattctttactaaaataattatgttgctaacgtctttcttacatttcca
tatgaagccttatcgtcatgtatcctaaatcacacgattatgagacaaag
gcgtcagcaggtctctaatgtcctctcacttaaaggaattcacgaatgtg
ttcaacacacaagtccctcagagctaaatttctacagttccagggtgccc
caaatttcagttaaaagacataacaactgattgaattataaagttcaaac
accaaatactatcccttttcaactttctatcttctacatttgagtattat
aaataattacaatattacaattacgaattaaaattcataattattaagta
aatctgtttaaaaaatacaatactttatgatgaacaagtagtttgtgaaa
aagcttttactttttacttttttctgaaaaatacttgagaaaaataaaaa
gttctcaaagagacatgcttaccacaatcatttcagaaggctctaagaca
atgcattcacagccacgcctaaagcttcctgcagaacgcttgccaaaact
agaaagaggtaaagaagacaagatttagggatcaggaaacatgaattagg
aactctagctaacctccaactatgggaatttttttcagttacaaaaacaa
cacattaaaagtgtcttcagtcatgattatacaaagaaataacaacaaaa
taacttaaattcctaagtttcaatcatgttttttctggaaaattgttttc
aaattaataatctaaataaggaagaattaacacaagcatgttttgtgatg
gacggtttgaaaacattctcaatgaggtgacgttttagaatattccaata
cagatagaaatggcgctcatcatgaactacaaatgtttataaaatataag
ttacaagcactcttctttttctaagttaacatgctgagacttaattttct
ggatcaagttattctaaaatgttttaagaaaaagatgccagctaggagaa
gggttatgcacagatgtgagtgcagatggtgtgcatggattcctttcctg
agaagagtcatcctggggactcagaacttacttctcgttccatttctgca
atctcactt
gaattctacactggggaaaaataattaagtcctggtgccaggtagaggag
gaactccgtccctggaagagactgctcagttctaagagcttatcacacag
ttaatatgtgctgatttcttggcttttgtttcaatttttttctataatat
tatcacacgaaggtattaaaaggatggagagagacaaggaggtttattct
ctgtagtttgggtaaagtttaaatgagtccatttttcttgatcaattttt
gtttcataagttctgttagaacatgatgctaactaaagggagtccacagg
tgagacatgctccctgctgactgagcagggcagggagaggaagtggcttt
ggaaactccttctggccaccattttctactgaatcccgagagtaccacac
ttgtgctgctcccgagtcaccgtgacctctacatcagtgaaggtattcca
aagagatactgtgcctctccctttactatcagtccattcaaacagtgctt
cccaaggaactgcaatttcccagaaatcttatgctggaaagaagagggaa
aggctgaagcctgatgccagtcagaggaggaacttgtctcctggaaagag
atttcacatagttttgccacagcgattggaaccaagacaaccaggggcca
cgtaaagggacttgaccatgactgcttagttacatatgaaaaacctaaat
ctcattaacatgagacccccaaatatggatttagggaagagtctgaacct
ctctgtccctcttctcatggtgaataactcaactgctttgtaatcttact
tacttcattaggtagtctgttgaggattagtgatccagcctaacttgcta
gagcagctgccaaggcctaggtgctgatcttaactccagtacaattctgg
caagctcctttgaactgttgtaactgtttgtaactgtttagcgtagggcg
gggggggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78978424_78979531
seq2: B6Ng01-009H16.b_47_1155

seq1  GAATTCTTTACTAAAATAATTATGTTGCTAACGTCTTTCTTACATTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTAAAATAATTATGTTGCTAACGTCTTTCTTACATTTCCA  50

seq1  TATGAAGCCTTATCGTCATGTATCCTAAATCACACGATTATGAGACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCTTATCGTCATGTATCCTAAATCACACGATTATGAGACAAAG  100

seq1  GCGTCAGCAGGTCTCTAATGTCCTCTCACTTAAAGGAATTCACGAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGCAGGTCTCTAATGTCCTCTCACTTAAAGGAATTCACGAATGTG  150

seq1  TTCAACACACAAGTCCCTCAGAGCTAAATTTCTACAGTTCCAGGGTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACACAAGTCCCTCAGAGCTAAATTTCTACAGTTCCAGGGTGCCC  200

seq1  CAAATTTCAGTTAAAAGACATAACAACTGATTGAATTATAAAGTTCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCAGTTAAAAGACATAACAACTGATTGAATTATAAAGTTCAAAC  250

seq1  ACCAAATACTATCCCTTTTCAACTTTCTATCTTCTACATTTGAGTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATACTATCCCTTTTCAACTTTCTATCTTCTACATTTGAGTATTAT  300

seq1  AAATAATTACAATATTACAATTACGAATTAAAATTCATAATTATTAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTACAATATTACAATTACGAATTAAAATTCATAATTATTAAGTA  350

seq1  AATCTGTTTAAAAAATACAATACTTTATGATGAACAAGTAGTTTGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTTAAAAAATACAATACTTTATGATGAACAAGTAGTTTGTGAAA  400

seq1  AAGCTTTTACTTTTTACTTTTTTCTGAAAAATACTTGAGAAAAATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTACTTTTTACTTTTTTCTGAAAAATACTTGAGAAAAATAAAAA  450

seq1  GTTCTCAAAGAGACATGCTTACCACAATCATTTCAGAAGGCTCTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAAGAGACATGCTTACCACAATCATTTCAGAAGGCTCTAAGACA  500

seq1  ATGCATTCACAGCCACGCCTAAAGCTTCCTGCAGAACGCTTGCCAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCACAGCCACGCCTAAAGCTTCCTGCAGAACGCTTGCCAAAACT  550

seq1  AGAAAGAGGTAAAGAAGACAAGATTTAGGGATCAGGAAACATGAATTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGTAAAGAAGACAAGATTTAGGGATCAGGAAACATGAATTAGG  600

seq1  AACTCTAGCTAACCTCCAACTATGGGAATTTTTTTCAGTTACAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCTAACCTCCAACTATGGGAATTTTTTTCAGTTACAAAAACAA  650

seq1  CACATTAAAAGTGTCTTCAGTCATGATTATACAAAGAAATAACAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAAGTGTCTTCAGTCATGATTATACAAAGAAATAACAACAAAA  700

seq1  TAACTTAAATTCCTAAGTTTCAATCATGTTTTTTCTGGAAAATTGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAATTCCTAAGTTTCAATCATGTTTTTTCTGGAAAATTGTTTTC  750

seq1  AAATTAATAATCTAAATAAGGAAGAATTAACACAAGCATGTTTTGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATAATCTAAATAAGGAAGAATTAACACAAGCATGTTTTGTGATG  800

seq1  GACGGTTTGAAAACATTCTCAATGAGGTGACGTTTTAGAATATTCCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTTTGAAAACATTCTCAATGAGGTGACGTTTTAGAATATTCCAATA  850

seq1  CAGATAGAAATGGCGC-CATCATGAACTACAAAATGTTTATAAAATATAA  899
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  CAGATAGAAATGGCGCTCATCATGAACTAC-AAATGTTTATAAAATATAA  899

seq1  GTTACAAGCACTC-CCCTTTTCTAAGTTAACATGCTGAGACTTAATTTTC  948
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  GTTACAAGCACTCTTCTTTTTCTAAGTTAACATGCTGAGACTTAATTTTC  949

seq1  CCGATCAAGTTATTCT-AAATGTTTTAAGAAAAAGATGCCAAGCTAGGAG  997
        |||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TGGATCAAGTTATTCTAAAATGTTTTAAGAAAAAGATGCC-AGCTAGGAG  998

seq1  AAGGGTTATGCACAGATGTGAGTGCAGAT-GTGTGCATGGATTCCCTCCC  1046
      ||||||||||||||||||||||||||||| ||||||||||||||| | ||
seq2  AAGGGTTATGCACAGATGTGAGTGCAGATGGTGTGCATGGATTCCTTTCC  1048

seq1  TGAG-AGAGCCACCCTGGGGACTCAGAACTTACTCCTCGTCCCATCTCTG  1095
      |||| |||| || ||||||||||||||||||||| ||||| |||| ||||
seq2  TGAGAAGAGTCATCCTGGGGACTCAGAACTTACTTCTCGTTCCATTTCTG  1098

seq1  CCAACTCTCACTT  1108
      |  | ||||||||
seq2  C--AATCTCACTT  1109

seq1: chr3_79140521_79141483
seq2: B6Ng01-009H16.g_68_1029 (reverse)

seq1  GCCCCCCCCCCCCGCCCTACGCTAAACAGTTACAAACAGTTACAACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCCCCCCCGCCCTACGCTAAACAGTTACAAACAGTTACAACAGTT  50

seq1  CAAAGGAGCTTGCCAGAATTGTTACTGGAGTTAAGATCAGCACCTAGGCC  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAAGGAGCTTGCCAGAATTG-TACTGGAGTTAAGATCAGCACCTAGGCC  99

seq1  TTGGCAGCTGCTCTAGCAAGTTAGGCTGGATCACTAATCCTCAACAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCTGCTCTAGCAAGTTAGGCTGGATCACTAATCCTCAACAGACT  149

seq1  ACCTAATGAAGTAAGTAAGGTTACAAAGCAGTTGAGTTATTCACCATGAG  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCTAATGAAGTAAGTAAGATTACAAAGCAGTTGAGTTATTCACCATGAG  199

seq1  AAGAGGGACAGAGAGGTTCAGACTCTTCCCTAAATCCATATTTGGGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGACAGAGAGGTTCAGACTCTTCCCTAAATCCATATTTGGGGGTC  249

seq1  TCATGTTAATGAGATTTAGGTTTTTCATATGTAACTAAGCAGTCATGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAATGAGATTTAGGTTTTTCATATGTAACTAAGCAGTCATGGTC  299

seq1  AAGTCCCTTTACGTGGCCCCTGGTTGTCTTGGTTCCAATCGCTGTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTTTACGTGGCCCCTGGTTGTCTTGGTTCCAATCGCTGTGGCAA  349

seq1  AACTATGTGAAATCTCTTTCCAGGAGACAAGTTCCTCCTCTGACTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTGAAATCTCTTTCCAGGAGACAAGTTCCTCCTCTGACTGGCAT  399

seq1  CAGGCTTCAGCCTTTCCCTCTTCTTTCCAGCATAAGATTTCTGGGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCAGCCTTTCCCTCTTCTTTCCAGCATAAGATTTCTGGGAAATT  449

seq1  GCAGTTCCTTGGGAAGCACTGTTTGAATGGACTGATAGTAAAGGGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCTTGGGAAGCACTGTTTGAATGGACTGATAGTAAAGGGAGAGG  499

seq1  CACAGTATCTCTTTGGAATACCTTCACTGATGTAGAGGTCACGGTGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATCTCTTTGGAATACCTTCACTGATGTAGAGGTCACGGTGACTC  549

seq1  GGGAGCAGCACAAGTGTGGTACTCTCGGGATTCAGTAGAAAATGGTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGCACAAGTGTGGTACTCTCGGGATTCAGTAGAAAATGGTGGCC  599

seq1  AGAAGGAGTTTCCAAAGCCACTTCCTCTCCCTGCCCTGCTCAGTCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTTTCCAAAGCCACTTCCTCTCCCTGCCCTGCTCAGTCAGCAG  649

seq1  GGAGCATGTCTCACCTGTGGACTCCCTTTAGTTAGCATCATGTTCTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGTCTCACCTGTGGACTCCCTTTAGTTAGCATCATGTTCTAACA  699

seq1  GAACTTATGAAACAAAAATTGATCAAGAAAAATGGACTCATTTAAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATGAAACAAAAATTGATCAAGAAAAATGGACTCATTTAAACTTT  749

seq1  ACCCAAACTACAGAGAATAAACCTCCTTGTCTCTCTCCATCCTTTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTACAGAGAATAAACCTCCTTGTCTCTCTCCATCCTTTTAATA  799

seq1  CCTTCGTGTGATAATATTATAGAAAAAAATTGAAACAAAAGCCAAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTGTGATAATATTATAGAAAAAAATTGAAACAAAAGCCAAGAAAT  849

seq1  CAGCACATATTAACTGTGTGATAAGCTCTTAGAACTGAGCAGTCTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATATTAACTGTGTGATAAGCTCTTAGAACTGAGCAGTCTCTTCC  899

seq1  AGGGACGGAGTTCCTCCTCTACCTGGCACCAGGACTTAATTATTTTTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGGAGTTCCTCCTCTACCTGGCACCAGGACTTAATTATTTTTCCC  949

seq1  CAGTGTAGAATTC  963
      |||||||||||||
seq2  CAGTGTAGAATTC  962