BAC Information

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BAC

Clone NameB6Ng01-009H20
Chromosome3 (Build37)
Map Location 72,474,708 - 72,606,437
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H20.bB6Ng01-009H20.g
ACCDH845415DH845416
length219463
definitionDH845415|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H20, 5' end.DH845416|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,474,708 - 72,474,926)(72,605,969 - 72,606,437)
sequence
aactccagttctctggaagagaaatcaatgctcttaatcactgaaggatc
tttccagctcctaaaacagatactcaaatattttcatttgatactcccat
tgatgtacttttatgaaaaattaaaagagatatgatttaggaaagaaaga
gagagagagagagagagagagggagagagagaaagagagagagaaatggg
gaggaagaaaggaaggaag
tttaaaaggttactggttttgatggcttatagatatcacagcaattgaag
gtgtttgttccattttatcacagagaataaatgggttcaggcaatcttag
atttatgaaatgattatttcctaagcactgtctttgctagttgaactaaa
atcataatattgagacttggatactaattcttctattatttttcatcaat
gattaagctttcctctgaacattttagtgtttgaacatgaagatgaacat
atttacgagaagctgtatctatttatccagacattatattttaataccag
atgaataatagaaataaaattgatttgatgtttccatttccagtctgttg
tgaatataacatcacagaacactgatgaattggtgtctgtgtattagtat
aaatgtcatgtagtggattatttggtgttggaagagggacagggaaatag
gtgggtaaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72474708_72474926
seq2: B6Ng01-009H20.b_50_268

seq1  AACTCCAGTTCTCTGGAAGAGAAATCAATGCTCTTAATCACTGAAGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGTTCTCTGGAAGAGAAATCAATGCTCTTAATCACTGAAGGATC  50

seq1  TTTCCAGCTCCTAAAACAGATACTCAAATATTTTCATTTGATACTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCCTAAAACAGATACTCAAATATTTTCATTTGATACTCCCAT  100

seq1  TGATGTACTTTTATGAAAAATTAAAAGAGATATGATTTAGGAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACTTTTATGAAAAATTAAAAGAGATATGATTTAGGAAAGAAAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAAAGAGAGAGAGAAATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAAAGAGAGAGAGAAATGGG  200

seq1  GAGGAAGAAAGGAAGGAAG  219
      |||||||||||||||||||
seq2  GAGGAAGAAAGGAAGGAAG  219

seq1: chr3_72605969_72606437
seq2: B6Ng01-009H20.g_67_535 (reverse)

seq1  TCCATTTACCCACCTATTTCCCTGTCCCTCTTCCAACACCAAATAATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTACCCACCTATTTCCCTGTCCCTCTTCCAACACCAAATAATCCA  50

seq1  CTACATGACATTTATACTAATACACAGACACCAATTCATCAGTGTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGACATTTATACTAATACACAGACACCAATTCATCAGTGTTCTGT  100

seq1  GATGTTATATTCACAACAGACTGGAAATGGAAACATCAAATCAATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATATTCACAACAGACTGGAAATGGAAACATCAAATCAATTTTAT  150

seq1  TTCTATTATTCATCTGGTATTAAAATATAATGTCTGGATAAATAGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATTCATCTGGTATTAAAATATAATGTCTGGATAAATAGATACA  200

seq1  GCTTCTCGTAAATATGTTCATCTTCATGTTCAAACACTAAAATGTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCGTAAATATGTTCATCTTCATGTTCAAACACTAAAATGTTCAGA  250

seq1  GGAAAGCTTAATCATTGATGAAAAATAATAGAAGAATTAGTATCCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTTAATCATTGATGAAAAATAATAGAAGAATTAGTATCCAAGTC  300

seq1  TCAATATTATGATTTTAGTTCAACTAGCAAAGACAGTGCTTAGGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTATGATTTTAGTTCAACTAGCAAAGACAGTGCTTAGGAAATAA  350

seq1  TCATTTCATAAATCTAAGATTGCCTGAACCCATTTATTCTCTGTGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATAAATCTAAGATTGCCTGAACCCATTTATTCTCTGTGATAAA  400

seq1  ATGGAACAAACACCTTCAATTGCTGTGATATCTATAAGCCATCAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAAACACCTTCAATTGCTGTGATATCTATAAGCCATCAAAACCA  450

seq1  GTAACCTTTTAAAGAATTC  469
      |||||||||||||||||||
seq2  GTAACCTTTTAAAGAATTC  469