BAC Information

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BAC

Clone NameB6Ng01-009J09
Chromosome3 (Build37)1 (Build37)
Map Location 40,096,451 - 40,096,863129,938,855 - 129,939,917
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009J09.bB6Ng01-009J09.g
ACCDH845487DH845488
length7901,064
definitionDH845487|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J09, 5' end.DH845488|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,096,451 - 40,096,863)(129,938,855 - 129,939,917)
sequence
gaattcagaacttaaagataacataatggtgagtgaaaaaattccaggct
gcctatttctattaaaatgaaataaaacaatgctttcttaagtcaaaaga
actgaaaaaaaaaaaggaagtcaacaactcaagcacaaacaccgatgcaa
tgttactactttatctcttggccatagactaggatgttaaaatccaaagg
tctatttttgacctttaaacaaagttcccagggaaactacagactcatag
tttattattctaaatattaaacgaaggcaaaaaagaaaaagaaaacctcc
attgaaatggtgaatatataaaaattaaccaatgtaaaaaaaaaactaca
aaatttggagctgtgacgaaacgatgtaccatctagtgattgccatatcc
agggatccatcccataatcagcttccaaaccctgacaccattgcatacac
tagcaagattttgctgaaaggaccctgatatagctgtctcatgtgagact
aggccggggcctagcaaacacagaagtggatgctcacagtcagctattgg
atggatcacagggctcccaatggaggagctagagaaagtatccaaggagc
taaagagatctgcaaccctgtaggtgcaacaacattatgaactaaccagt
acccctgagctcttgactctagctgcatatgtatcagaagatggcctagt
cggccatcactagaaagagaggcccattggacaggcaaactttatatgcc
ccagtacaggggaacgctagggccaagaagggggagtggg
gaattctttttgcaatagcaggcctggactgagctggtgctttgcaacat
ctggcccataactgcagatggtctgagcttcacggctgaggggacgtttc
aatgcattcaggcttgtcttctgaagcaggatccaactgggcagtttttg
caatgcatctgtatccttaagatagttttatgtttattttctcaacttaa
gggatttagctggggcttgcagaaatacaaaagctgaattcggcatttct
aactttgttagaagcaaaattccaatttatctctatataatcctagagcc
tgtagacagaaattgctatttaagcttccatagagcaagacaggagtcct
actacattaggtgtatattaaaggtaataaatgtgtaacatatatttctg
tttctctttcaactgggctgctctcacacataataattaaaacttaaaaa
gagaacacttgcaaaacaaaaaacatattaatcaacctaggttattcatc
gggggaaattccacctcaatggtccttacatttacaaagaagaaataact
atagtaaacagttgtgaagaaaaacagtaaaagacacaggctttgcttga
cagactattctaaaggaaaagaaaaaaaaaaaaaaaagacagaaacctaa
aagaataagtttcaaatgctgagtgagattacagaaaagagacaaaaggc
agctagggattttagcaagtctgtttgtagaatcttgtttatgagttttt
cctttaactgctgctattaagaagaatcttgattacgtcactcaaaagaa
ttgtttcagctccattcatttatcctgtgaattttacaacttcatttttg
tttcaacatccaaataacattccattgtataacccagatacagaaagaca
aacatcacatgttttctctatatgtggatgcttaactttgggtttttaga
cttatgttttacatctgttaaacatatagagggcagatctagtaaagggc
aatggggaggggatttctgggaaaggacacgaaatgcattgatatataag
ggataaagggagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40096451_40096863
seq2: B6Ng01-009J09.b_439_835

seq1  CATATCCAGGGACCCATTCCATAATCAGCTTCCAAACGATGACACCATTG  50
      |||||||||||| |||| |||||||||||||||||||  |||||||||||
seq2  CATATCCAGGGATCCATCCCATAATCAGCTTCCAAACCCTGACACCATTG  50

seq1  CATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCATG  100

seq1  TGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG  150

seq1  CTATTAGATGGATCACAGGACCCCCAATGGAGGAGCTAGAGGAAGTATCC  200
      ||||| ||||||||||||| | ||||||||||||||||||| ||||||||
seq2  CTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTATCC  200

seq1  AAGGAGCTAAAGAGATCTGCAACCCTGGAGGTGCAACAACATTATGAACT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACT  250

seq1  AACCAATACCCCGGAGCTCTTGACTTTAGCTGCATATGTATCAAAAGATG  300
      ||||| |||||| |||||||||||| ||||||||||||||||| ||||||
seq2  AACCAGTACCCCTGAGCTCTTGACTCTAGCTGCATATGTATCAGAAGATG  300

seq1  GCCTAGTAAGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTT  350
      |||||||  ||||||||| ||||||||||||||||||||| |||||||||
seq2  GCCTAGTCGGCCATCACTAGAAAGAGAGGCCCATTGGACAGGCAAACTTT  350

seq1  ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAATGGGTGG  400
      |||||||||||||||||||||||| |||||||| ||| |||| ||||   
seq2  ATATGCCCCAGTACAGGGGAACGCTAGGGCCAAGAAGGGGGAGTGGG---  397

seq1  ATAGGGGAGTGGG  413
                   
seq2  -------------  397

seq1: chr1_129938855_129939917
seq2: B6Ng01-009J09.g_70_1133

seq1  GAATTCTCTTTGCAATAGCAGGCCTGGACTGAGCTGGTGCTTTGCAACAT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCAATAGCAGGCCTGGACTGAGCTGGTGCTTTGCAACAT  50

seq1  CTGGCCCATAACTGCAGATGGTCTGAGCTTCACGGCTGAGGGGACGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCATAACTGCAGATGGTCTGAGCTTCACGGCTGAGGGGACGTTTC  100

seq1  AATGCATTCAGGCTTGTCTTCTGAAGCAGGATCCAACTGGGCAGTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTCAGGCTTGTCTTCTGAAGCAGGATCCAACTGGGCAGTTTTTG  150

seq1  CAATGCATCTGTATCCTTAAGATAGTTTTATGTTTATTTTCTCAACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATCTGTATCCTTAAGATAGTTTTATGTTTATTTTCTCAACTTAA  200

seq1  GGGATTTAGCTGGGGCTTGCAGAAATACAAAAGCTGAATTCGGCATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTAGCTGGGGCTTGCAGAAATACAAAAGCTGAATTCGGCATTTCT  250

seq1  AACTTTGTTAGAAGCAAAATTCCAATTTATCTCTATATAATCCTAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTAGAAGCAAAATTCCAATTTATCTCTATATAATCCTAGAGCC  300

seq1  TGTAGACAGAAATTGCTATTTAAGCTTCCATAGAGCAAGACAGGAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGAAATTGCTATTTAAGCTTCCATAGAGCAAGACAGGAGTCCT  350

seq1  ACTACATTAGGTGTATATTAAAGGTAATAAATGTGTAACATATATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTAGGTGTATATTAAAGGTAATAAATGTGTAACATATATTTCTG  400

seq1  TTTCTCTTTCAACTGGGCTGCTCTCACACATAATAATTAAAACTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCAACTGGGCTGCTCTCACACATAATAATTAAAACTTAAAAA  450

seq1  GAGAACACTTGCAAAACAAAAAACATATTAATCAACCTAGGTTATTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTTGCAAAACAAAAAACATATTAATCAACCTAGGTTATTCATC  500

seq1  GGGGGAAATTCCACCTCAATGGTCCTTACATTTACAAAGAAGAAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAATTCCACCTCAATGGTCCTTACATTTACAAAGAAGAAATAACT  550

seq1  ATAGTAAACAGTTGTGAAGAAAAACAGTAAAAGACACAGGCTTTGCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAACAGTTGTGAAGAAAAACAGTAAAAGACACAGGCTTTGCTTGA  600

seq1  CAGACTATTCTAAAGGAAAAGAAAAAAAAAAAAAAAAGACAGAAACCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATTCTAAAGGAAAAGAAAAAAAAAAAAAAAAGACAGAAACCTAA  650

seq1  AAGAATAAGTTTCAAATGCTGAGTGAGATTACAGAAAAGAGACAAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGTTTCAAATGCTGAGTGAGATTACAGAAAAGAGACAAAAGGC  700

seq1  AGCTAGGGATTTTAGCAAGTCTG-TTGTAGAAATCTTGTTTATGAGTTTT  749
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AGCTAGGGATTTTAGCAAGTCTGTTTGTAG-AATCTTGTTTATGAGTTTT  749

seq1  TCCTTTAACTGCTGCTATTAAGAAGAATCTTGATTACGTCACTCAAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAACTGCTGCTATTAAGAAGAATCTTGATTACGTCACTCAAAAGA  799

seq1  ATTGTTTCCAGCTCCATTCATTTA-CCTGTGAATTTTACAACTTCA-TTT  847
      ||||||| |||||||||||||||| ||||||||||||||||||||| |||
seq2  ATTGTTT-CAGCTCCATTCATTTATCCTGTGAATTTTACAACTTCATTTT  848

seq1  TGTTTCAACATCCAAATAACATTCCATTGTATAACCCAGATACAGAAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAACATCCAAATAACATTCCATTGTATAACCCAGATACAGAAAGA  898

seq1  CAAACATCACATGTTTTCTCTTATATGTGGATGC-TAACTTTGGGTCTTT  946
      |||||||||||||||||||| ||||||||||||| ||||||||||| |||
seq2  CAAACATCACATGTTTTCTC-TATATGTGGATGCTTAACTTTGGGTTTTT  947

seq1  AGACTTATGTTTTACATCTGTTAAACATATAGAGGGCAGGATCTAGTAAA  996
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGACTTATGTTTTACATCTGTTAAACATATAGAGGGCA-GATCTAGTAAA  996

seq1  GGGCAATGGGGAGGGGATTTCTGGGAGAGGACACAGAATGCAGTGATATA  1046
      |||||||||||||||||||||||||| |||||||  |||||| |||||||
seq2  GGGCAATGGGGAGGGGATTTCTGGGAAAGGACACGAAATGCATTGATATA  1046

seq1  -AAGGGAAAAGGGGAGCG  1063
       |||||| || |||||||
seq2  TAAGGGATAAAGGGAGCG  1064