BAC Information

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BAC

Clone NameB6Ng01-009J21
Chromosome3 (Build37)
Map Location 79,511,449 - 79,616,810
singlet/doubletdoublet
Overlap geneRxfp1
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneTmem144, 1110032E23Rik, EG626797, Gria2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009J21.bB6Ng01-009J21.g
ACCDH845511DH845512
length3141,100
definitionDH845511|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J21, 5' end.DH845512|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,511,449 - 79,511,762)(79,615,700 - 79,616,810)
sequence
ctgcctcagattatactgccttgcttctcggtgagatcctactctttttt
tattttttaaatttttatttatttatttattaattattgggtatttattt
catttacatttccaatgctatcccaaaagtcccccacaccctcccacacc
cactcccccacccacccactcccacctcttggccctggctttcccctgta
ctgaggcatataaagtctgcaggaccaatgggcctctctttccactgatg
gccgaacaggccatcttctgatacatattcagctagagacatgagctctg
gggtgggggtgggg
gaattctgttgtccaaatgtctccttgcctgacaaacactctaaacttct
ttgctattgttactacatgttaatcaaggggaaacaacgtttacaggtag
gaaaaacttacaacttataaaaactactggacttaccaccctcagcccaa
ttgaactttgtcttgccaaatcagaaacatccctggagtcccttctaatc
attgaattgctcacacaaataatgtttgatattaacaatgtcttttttct
atttcagtttttacttgaaatgtcattaaattgtgatggtatggcaattt
ctgaataaacatgacagaaaaactatttcttttcttctttagatatatat
ttagaatttcatggtgggcagcctttattctttgtgaggtggccaatttt
aaatgggaagtaaggaaattacagagaaaaaaaaacagtaaaagaaaata
aagagcccttaattccaccccaagcaatccaagcaatgcctacaatgtta
ataaaagtattgtgggagaaacaagcttttccaaaatggttaccaaacaa
tttactgttcatggttacgttatagggacagatctgagtcctagcacact
caatggcatttgctgggttccttatcttttgatacagggccatgtggtta
ttaggaaaggggagacactctcttcaggctgatgagctgaggggaaggct
caaacagtgctggctagaagctgcaggaccctttctaatcaaggacgtag
ctccacagttgtaggcagcctagtgaggaagggcttccagtcctctctgt
cctggtttctgtgggttcatcttgatgtaggttttagggtctgtctgtct
gtctgtttttgcctctcccctcctgcagttttgtaatctcccctctgtcc
actcatcctcagagtgagggtttgaggttttcattcctcttgtgtgtaaa
cagagtctgctgttttgatcttttcaagttgtgctttctactgaacctaa
tgaaatgcagccacgtttgtaccagagagttcctgcctccttgtgtcaga
ggcaaactgcataaagtgaaggaccaccccgtagctgatctttccactgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79511449_79511762
seq2: B6Ng01-009J21.b_51_364

seq1  CTGCCTCAGATTATACTGCCTTGCTTCTCGGTGAGATCCTACTCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGATTATACTGCCTTGCTTCTCGGTGAGATCCTACTCTTTTTT  50

seq1  TATTTTTTAAATTTTTATTTATTTATTTATTAATTATTGGGTATTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAATTTTTATTTATTTATTTATTAATTATTGGGTATTTATTT  100

seq1  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCACACC  150

seq1  CACTCCCCCACCCACCCACTCCCACCTCTTGGCCCTGGCTTTCCCCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCACCCACCCACTCCCACCTCTTGGCCCTGGCTTTCCCCTGTA  200

seq1  CTGAGGCATATAAAGTCTGCAGGACCAATGGGCCTCTCTTTCCACTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATATAAAGTCTGCAGGACCAATGGGCCTCTCTTTCCACTGATG  250

seq1  GCCGAACAGGCCATCTTCTGATACATATTCAGCTAGAGACATGAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAACAGGCCATCTTCTGATACATATTCAGCTAGAGACATGAGCTCTG  300

seq1  GGGTGGGGGTGGGG  314
      ||||||||||||||
seq2  GGGTGGGGGTGGGG  314

seq1: chr3_79615700_79616810
seq2: B6Ng01-009J21.g_67_1166 (reverse)

seq1  ACAGTGTGAAGATCAGCCTTACGGGGTGGCTCCTTTCACTTTATGCAGTT  50
      ||||||  |||||||||  |||||||||| ||| |||||||||||||| |
seq2  ACAGTGGAAAGATCAGC--TACGGGGTGG-TCC-TTCACTTTATGCAG-T  45

seq1  TTGCCTCTGGACACAAGGGGGCAGGAACTCTCTGGTACAAACGTGGCTGC  100
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCCTCT-GACACAAGGAGGCAGGAACTCTCTGGTACAAACGTGGCTGC  94

seq1  CATTTTCATTAAGGTTCAGTAGAAAGCACAACTTGAAAAGATCAAAACAG  150
         ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  --ATTTCATT-AGGTTCAGTAGAAAGCACAACTTGAAAAGATCAAAACAG  141

seq1  CAGACTCTGTTTACCACACAAGGGGAATGAAAACCTCAAACCCTCACCTC  200
      ||||||||||||| |||||||| ||||||||||||||||||||||| |||
seq2  CAGACTCTGTTTA-CACACAAGAGGAATGAAAACCTCAAACCCTCA-CTC  189

seq1  TGAGGATGAGTGGACAGAGGGGAGATTACAAAACTGCAGGAGGGGAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGAGTGGACAGAGGGGAGATTACAAAACTGCAGGAGGGGAGAGG  239

seq1  CAAAAACAGACAGACAGACAGACCCTAAAACCTACATCAAGATGAACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGACAGACAGACAGACCCTAAAACCTACATCAAGATGAACCCA  289

seq1  CAGAAACCAGGACAGAGAGGACTGGAAGCCCTTCCTCACTAGGCTGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGGACAGAGAGGACTGGAAGCCCTTCCTCACTAGGCTGCCTA  339

seq1  CAACTGTGGAGCTACGTCCTTGATTAGAAAGGGTCCTGCAGCTTCTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGGAGCTACGTCCTTGATTAGAAAGGGTCCTGCAGCTTCTAGCC  389

seq1  AGCACTGTTTGAGCCTTCCCCTCAGCTCATCAGCCTGAAGAGAGTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTTGAGCCTTCCCCTCAGCTCATCAGCCTGAAGAGAGTGTCTC  439

seq1  CCCTTTCCTAATAACCACATGGCCCTGTATCAAAAGATAAGGAACCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTAATAACCACATGGCCCTGTATCAAAAGATAAGGAACCCAGC  489

seq1  AAATGCCATTGAGTGTGCTAGGACTCAGATCTGTCCCTATAACGTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCATTGAGTGTGCTAGGACTCAGATCTGTCCCTATAACGTAACCA  539

seq1  TGAACAGTAAATTGTTTGGTAACCATTTTGGAAAAGCTTGTTTCTCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTAAATTGTTTGGTAACCATTTTGGAAAAGCTTGTTTCTCCCAC  589

seq1  AATACTTTTATTAACATTGTAGGCATTGCTTGGATTGCTTGGGGTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTATTAACATTGTAGGCATTGCTTGGATTGCTTGGGGTGGAAT  639

seq1  TAAGGGCTCTTTATTTTCTTTTACTGTTTTTTTTTCTCTGTAATTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTCTTTATTTTCTTTTACTGTTTTTTTTTCTCTGTAATTTCCTT  689

seq1  ACTTCCCATTTAAAATTGGCCACCTCACAAAGAATAAAGGCTGCCCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCATTTAAAATTGGCCACCTCACAAAGAATAAAGGCTGCCCACCA  739

seq1  TGAAATTCTAAATATATATCTAAAGAAGAAAAGAAATAGTTTTTCTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCTAAATATATATCTAAAGAAGAAAAGAAATAGTTTTTCTGTCA  789

seq1  TGTTTATTCAGAAATTGCCATACCATCACAATTTAATGACATTTCAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTCAGAAATTGCCATACCATCACAATTTAATGACATTTCAAGTA  839

seq1  AAAACTGAAATAGAAAAAAGACATTGTTAATATCAAACATTATTTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAATAGAAAAAAGACATTGTTAATATCAAACATTATTTGTGTG  889

seq1  AGCAATTCAATGATTAGAAGGGACTCCAGGGATGTTTCTGATTTGGCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCAATGATTAGAAGGGACTCCAGGGATGTTTCTGATTTGGCAAG  939

seq1  ACAAAGTTCAATTGGGCTGAGGGTGGTAAGTCCAGTAGTTTTTATAAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTCAATTGGGCTGAGGGTGGTAAGTCCAGTAGTTTTTATAAGTT  989

seq1  GTAAGTTTTTCCTACCTGTAAACGTTGTTTCCCCTTGATTAACATGTAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTTTCCTACCTGTAAACGTTGTTTCCCCTTGATTAACATGTAGT  1039

seq1  AACAATAGCAAAGAAGTTTAGAGTGTTTGTCAGGCAAGGAGACATTTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGCAAAGAAGTTTAGAGTGTTTGTCAGGCAAGGAGACATTTGGA  1089

seq1  CAACAGAATTC  1111
      |||||||||||
seq2  CAACAGAATTC  1100