BAC Information

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BAC

Clone NameB6Ng01-009K12
Chromosome3 (Build37)
Map Location 143,458,455 - 143,617,850
singlet/doubletdoublet
Overlap geneLOC100039938
Upstream genePkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K12.bB6Ng01-009K12.g
ACCDH845539DH845540
length1,013756
definitionDH845539|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K12, 5' end.DH845540|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,616,823 - 143,617,850)(143,458,455 - 143,459,206)
sequence
gaattctcccttgtcaccttctgccttgcagccatcccttgcctctgtgg
gcatgcgtggctttcttcactccctgccactttgcctttgccaactggac
tgggacagtgccctgtgctcttaatggttcccattctattactcctgtcc
tttctctcccgtcaaactcaccagtttatgtccttcctcccccctgacag
tgtaggatggattcagaagtattcgtttctgtgttccctacccttgttgg
agtctggcaacagaacgacatcggggtgtgcttttgttaaatctgtgggc
attaaaatggcattgctgtctctcacctggatttcatctcacgtcctctc
tctggccgtagcctcagacctccgtggcagccctgactatgaagtcttgg
ccatgtcacgtaacctttctgcattctgctgctgagtataaagaaagcat
ttggaacacctttctcgtttctatttcacgagatgggtaggatcaaatga
gacgacgtgagtttggaagggctacatgcttagacacctcccgtgctcgg
ctcagttggctagcaacagcttaaaggacagcgcctctcaggtaacttgc
atgcttgtcttttaggaggacctcgtttgaaagccccggatctagtcata
gaactactcagtgtcattacatacggagataatttgtattatgggggcta
tgaaggagatgtgaaagggctactcaccgatggtggtgatattgtagtga
gctatatcaaactctaatgagctcccgacctggggtttaatctattgctc
caggcgtcagaattcgatgagtacaactaaaaagaaaaattaggggacaa
atattgagttttttaattttttaaatgtctcctttttaaacaatattggg
gatttttgtgagtgtatagaaaagtgtatactataaaaatctattaaact
ttaagctggttaatttgagtcttgttaaatatgcatcttgcttcctgttt
ctttttacctgga
gaattcatatattcaaaactgtttgaagcagaaatgcccatgaatttatt
tgagatccctttaaagctataggtctcaacctcactgatggatactgaac
aacaatattgtttggctgtgtatctatatgcatttgacaacatatcgatt
tcttattgcctgaatattagaagagccataaggaagcgcagatacttcgg
ggtggatatcatcaggaaataataaataaaggcggtgtcccatttaatgc
ctcttggtgtgtatgatgtcccaggaaaccctggactctgtgccttttct
tgatgataaaggaaatctcttttacttctctttttttttccttaaaaata
atatttgggcaagggagctttcgtacttcctgtacccacacacccatcca
catgaagaacactattcctatgtgacgagcaacagggaacacatgggaaa
gcctgaaaaatattgctcctgctatgtgcagtgttccgtgttcttctccc
tgtgactttctttcttttcttttcttttctcttcttttcttttcttttct
tttcttttttcttttttgtaatgtaaaagagcagataccctccacgtgtt
tcataagttcctcgtgcctcccttcctgatcacatcgctctctcagccct
gcaccttcacctggcctggtccagctagtcagcttttcacctcaaaacag
attttccccttaacctttacttttttattagagagcgaggcaggaggcag
tggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143616823_143617850
seq2: B6Ng01-009K12.b_46_1058 (reverse)

seq1  TCCAGTGTAAAGGAAGAAACATGGGAGCAAGAGTGCATATTCTACACAAG  50
      ||||| |||||  |||||||| || ||||||| |||||||| || |||||
seq2  TCCAG-GTAAA--AAGAAACA-GGAAGCAAGA-TGCATATT-TA-ACAAG  43

seq1  GCTCAAATTAACCAAGCTTTAAAGTTTAATAGATTTTTATTAGTACTACA  100
       |||||||||||| ||| ||||||||||||||||||||| ||||| ||||
seq2  ACTCAAATTAACC-AGC-TTAAAGTTTAATAGATTTTTA-TAGTA-TACA  89

seq1  CTTTTCTATACTACTACACAAAAATTCCCAATATTGTTTCAAAAAGGAGA  150
      ||||||||||| ||| ||||||||| ||||||||||||| ||||||||||
seq2  CTTTTCTATAC-ACT-CACAAAAATCCCCAATATTGTTT-AAAAAGGAGA  136

seq1  CATTTTAAAAATT-AAAAACTCAATATTTGTCCCCTAATTTTTCTTTTTA  199
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAAATTAAAAAACTCAATATTTGTCCCCTAATTTTTCTTTTTA  186

seq1  GTTTGTACTCATCTGATTCTGACGCCTTGGAGCAATAGATTAAACCCCAG  249
      | |||||||||||  ||||||||||| |||||||||||||||||||||||
seq2  G-TTGTACTCATCGAATTCTGACGCC-TGGAGCAATAGATTAAACCCCAG  234

seq1  GTCGGGAGCTCATTAGAGTTTGATATAGCTCACTACAATATCACCACCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGAGCTCATTAGAGTTTGATATAGCTCACTACAATATCACCACCAT  284

seq1  CGGTGAGTAGCCCTTTCACATCTCCTTCATAGCCCCCATAATACAAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGTAGCCCTTTCACATCTCCTTCATAGCCCCCATAATACAAATTA  334

seq1  TCTCCGTATGTAATGACACTGAGTAGTTCTATGACTAGATCCGGGGCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTATGTAATGACACTGAGTAGTTCTATGACTAGATCCGGGGCTTT  384

seq1  CAAACGAGGTCCTCCTAAAAGACAAGCATGCAAGTTACCTGAGAGGCGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAGGTCCTCCTAAAAGACAAGCATGCAAGTTACCTGAGAGGCGCT  434

seq1  GTCCTTTAAGCTGTTGCTAGCCAACTGAGCCGAGCACGGGAGGTGTCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAAGCTGTTGCTAGCCAACTGAGCCGAGCACGGGAGGTGTCTAA  484

seq1  GCATGTAGCCCTTCCAAACTCACGTCGTCTCATTTGATCCTACCCATCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGCCCTTCCAAACTCACGTCGTCTCATTTGATCCTACCCATCTC  534

seq1  GTGAAATAGAAACGAGAAAGGTGTTCCAAATGCTTTCTTTATACTCAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAGAAACGAGAAAGGTGTTCCAAATGCTTTCTTTATACTCAGCA  584

seq1  GCAGAATGCAGAAAGGTTACGTGACATGGCCAAGACTTCATAGTCAGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCAGAAAGGTTACGTGACATGGCCAAGACTTCATAGTCAGGGC  634

seq1  TGCCACGGAGGTCTGAGGCTACGGCCAGAGAGAGGACGTGAGATGAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGGAGGTCTGAGGCTACGGCCAGAGAGAGGACGTGAGATGAAATC  684

seq1  CAGGTGAGAGACAGCAATGCCATTTTAATGCCCACAGATTTAACAAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGAGACAGCAATGCCATTTTAATGCCCACAGATTTAACAAAAGC  734

seq1  ACACCCCGATGTCGTTCTGTTGCCAGACTCCAACAAGGGTAGGGAACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCGATGTCGTTCTGTTGCCAGACTCCAACAAGGGTAGGGAACACA  784

seq1  GAAACGAATACTTCTGAATCCATCCTACACTGTCAGGGGGGAGGAAGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGAATACTTCTGAATCCATCCTACACTGTCAGGGGGGAGGAAGGAC  834

seq1  ATAAACTGGTGAGTTTGACGGGAGAGAAAGGACAGGAGTAATAGAATGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGGTGAGTTTGACGGGAGAGAAAGGACAGGAGTAATAGAATGGG  884

seq1  AACCATTAAGAGCACAGGGCACTGTCCCAGTCCAGTTGGCAAAGGCAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAAGAGCACAGGGCACTGTCCCAGTCCAGTTGGCAAAGGCAAAG  934

seq1  TGGCAGGGAGTGAAGAAAGCCACGCATGCCCACAGAGGCAAGGGATGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGAGTGAAGAAAGCCACGCATGCCCACAGAGGCAAGGGATGGCT  984

seq1  GCAAGGCAGAAGGTGACAAGGGAGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  GCAAGGCAGAAGGTGACAAGGGAGAATTC  1013

seq1: chr3_143458455_143459206
seq2: B6Ng01-009K12.g_70_825

seq1  GAATTCATATATTCAAAACTGTTTGAAGCAGAAATGCCCATGAATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTCAAAACTGTTTGAAGCAGAAATGCCCATGAATTTATT  50

seq1  TGAGATCCCTTTAAAGCTATAGGTCTCAACCTCACTGATGGATACTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCCTTTAAAGCTATAGGTCTCAACCTCACTGATGGATACTGAAC  100

seq1  AACAATATTGTTTGGCTGTGTATCTATATGCATTTGACAACATATCGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTGTTTGGCTGTGTATCTATATGCATTTGACAACATATCGATT  150

seq1  TCTTATTGCCTGAATATTAGAAGAGCCATAAGGAAGCGCAGATACTTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGCCTGAATATTAGAAGAGCCATAAGGAAGCGCAGATACTTCGG  200

seq1  GGTGGATATCATCAGGAAATAATAAATAAAGGCGGTGTCCCATTTAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATATCATCAGGAAATAATAAATAAAGGCGGTGTCCCATTTAATGC  250

seq1  CTCTTGGTGTGTATGATGTCCCAGGAAACCCTGGACTCTGTGCCTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGTGTATGATGTCCCAGGAAACCCTGGACTCTGTGCCTTTTCT  300

seq1  TGATGATAAAGGAAATCTCTTTTACTTCTCTTTTTTTTTCCTTAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAAAGGAAATCTCTTTTACTTCTCTTTTTTTTTCCTTAAAAATA  350

seq1  ATATTTGGGCAAGGGAGCTTTCGTACTTCCTGTACCCACACACCCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGGCAAGGGAGCTTTCGTACTTCCTGTACCCACACACCCATCCA  400

seq1  CATGAAGAACACTATTCCTATGTGACGAGCAACAGGGAACACATGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAACACTATTCCTATGTGACGAGCAACAGGGAACACATGGGAAA  450

seq1  GCCTGAAAAATATTGCTCCTGCTATGTGCAGTGTTCCGTGTTCTTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAAATATTGCTCCTGCTATGTGCAGTGTTCCGTGTTCTTCTCCC  500

seq1  TGTGACTTTCTTTCTTTTCTTTTCTTTTCTCTTCTTTTCTTTTCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTCTTTCTTTTCTTTTCTTTTCTCTTCTTTTCTTTTCTTTTCT  550

seq1  TTTCTTTTTTCTTTTTTGTAATGTAAAAGAGCAGATACCCTCCACGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTCTTTTTTGTAATGTAAAAGAGCAGATACCCTCCACGTGTT  600

seq1  TCATAAGTTCCTCGTGCCTCCCTTCCTGATCACATCGCTCTCTCAGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTTCCTCGTGCCTCCCTTCCTGATCACATCGCTCTCTCAGCCCT  650

seq1  GCACCTTCACCTGGCCTGGTCCAGCTAGTCAGC-TTTCACCTC-AAACAG  698
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GCACCTTCACCTGGCCTGGTCCAGCTAGTCAGCTTTTCACCTCAAAACAG  700

seq1  A-TTTCCCCTTAACCTTTAC-TTTTCATTAGAGAGCGAGGCAGGAGGCAG  746
      | |||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  ATTTTCCCCTTAACCTTTACTTTTTTATTAGAGAGCGAGGCAGGAGGCAG  750

seq1  TGGGGG  752
      ||||||
seq2  TGGGGG  756