BAC Information

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BAC

Clone NameB6Ng01-009K16
Chromosome3 (Build37)
Map Location 99,253,341 - 99,402,076
singlet/doubletdoublet
Overlap geneM6pr-ps
Upstream geneLOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
Downstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K16.bB6Ng01-009K16.g
ACCDH845547DH845548
length1,1961,066
definitionDH845547|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K16, 5' end.DH845548|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,400,901 - 99,402,076)(99,253,341 - 99,254,411)
sequence
gaattcaatgacagagtgcaaactggggattgacaagggctgaggaagga
aataatgtggaatgaagtagcttattggatgtggggttttacttttgcgt
catgacaattatttaagaacttagtagatgtagtgtttatatcacattgt
aaatgctattggtttgccttaaatgattacataactgtttttttctgaat
gagatctgttggtattgatgataatatccatctcaactcacaaattatgc
aagtatgagcttatagaaaaaatctttaaaaaattgtgacaaatactaag
gaaaatggcaagggctgagtatcccaagaagacctagggcaaagaagacc
tttggcatggactctaaaggaaaagagtcccacgcggagaaggaaagaca
gaatacatcatagtcaggagaacaataacatatagaggggcagttgatga
gatgcagggtagcacagaggtcaggatgaaacagcaaatcaaaactctaa
ttctatcccaggttcaaaatgtttaagttttgtttgggtgcaagtggttt
gtcttaaaggtgatagagtagataagccataagcattgaaaagctacctt
gcattagtatgagggaaagctggggagaaagactgtggtaggtgagtgaa
tagtaagaaccctaaagtcagactgccagtgtgaaagccagctgtgccac
tctctacgcaggcaaacactaggcagcttacctcctcatacctcagcttt
accttctgtaaaagaaaatagcaccctctatgggggagctgaggaggctc
tgagtgaaagtctaaagatgaatgaagtccagagtaagtctgtattgttg
acatagacactgccttcttcaggactaagcattgggattctgggaaatcg
gtaaaaacctttctttggtctaagtatgaatgttgaatgaataactgacc
agtgtgtccaaacacctagcaactgcagctttctctttcaggatgtttcc
ggcctgagactggcagatccaacagaagatctcctttatgaggattactg
gtcctctttccttttgtgcctaacaataagagtaccaaaggttccctgtt
tactgtagtattttggtatgcggccattcgagaatgcacagaacgtctgg
acacttaacctttcctggaacattgtgccttgtgtttctggtcctg
gaattcttctctatgtgagtatgaaatcattccctgggggaaggtgcagt
gtagcactagttgtatgccatgagctcaatacagaaggttttgttattcc
ataggaaatctcttcaagtatttgaaaagaaaatggatattatccacctt
aggctcactttttatgccaaacttcccagaattccaagtgacccctagat
ataaatctagaattctttactcaactaaagtcttattaacaagagttaga
ataaaataaagccatatgtagacggatcttccacttgacctgattctgag
gcttctgccattctgtcctatcttgaatactcccatactcccatcactga
tattatatgttgatgctaaaaccttgctaaaagtacaagagtactcttga
ctcttacgtgtcagaggctcaaaaagaaggcaaaatttgggtgctattag
gacaccaggacacacagccatagactccaaaggatgaaggtctgaactgg
gaatctcacataaggacagttcctggaatagtcaagatgaggtataggta
ggcatggtagctgaatacaggattttatgtagtaaaggttaagaaactgg
gaagctaaaagcaaaaggcagagggaaggagaagtagtttagttaataaa
gtgtttgctttgtaagcatgaagacccaagttctccagaactgaagttaa
gaggaaagagagaaaaacaaacctaggtgaattagcatgtgcttgcactt
ccaggtctgtgttggtggattcctgtggcttttctggccagccagcctcc
ccccccccccacacacacacactcctctacccacccactcccacttcttg
gccctggcattcccctgtactggggcatataaagttttgcaagatcaagg
gtctctcctcccaatgatggctggctaggctttctttctgatacatatgc
agctagagacacgagttctggggtactggttagtcatatgtgtccaccta
tagggtgcagaccttttagtccttgggtactttctctagctctccatggg
gcctgtgtctatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99400901_99402076
seq2: B6Ng01-009K16.b_46_1241 (reverse)

seq1  CAGGA-CAGAAACAC-AGGCAC-ATGTT-CAGGAAA-GTTA--TGGTCAG  43
      ||||| ||||||||| |||||| ||||| ||||||| ||||  ||  |||
seq2  CAGGACCAGAAACACAAGGCACAATGTTCCAGGAAAGGTTAAGTGTCCAG  50

seq1  AACGTCTGTGCATTCT--GATGGCGCAATACC-AAATACTACAGT-AACA  89
      |   ||||||||||||   |||||   ||||| |||||||||||| ||||
seq2  ACGTTCTGTGCATTCTCGAATGGCCGCATACCAAAATACTACAGTAAACA  100

seq1  GGGAACCTTT-GTATCTTTATTGTATGGCAC-AAAGGAA--GGGGCCAGT  135
      |||||||||| |||   |||||||  ||||| |||||||   || |||| 
seq2  GGGAACCTTTGGTACTCTTATTGTTAGGCACAAAAGGAAAGAGGACCAG-  149

seq1  TAATCCTC-TATAGGAGATC-TCTGTAGG-TCTG-CAGTCTCAGGCTGTA  181
      |||||||| || |||||||| ||||| || |||| ||||||||||| | |
seq2  TAATCCTCATAAAGGAGATCTTCTGTTGGATCTGCCAGTCTCAGGCCGGA  199

seq1  AACATCTAGGAAGAGAAAGCTGCAGTTGCTA-GTGTTTGCACACACTGGT  230
      ||||||  | ||||||||||||||||||||| ||||||| ||||||||||
seq2  AACATCCTGAAAGAGAAAGCTGCAGTTGCTAGGTGTTTGGACACACTGGT  249

seq1  CAGTTATTCA-TCAACATTCATACTTAGACCAGAGAAAGGTTTTTACCGA  279
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  CAGTTATTCATTCAACATTCATACTTAGACCAAAGAAAGGTTTTTACCGA  299

seq1  TTTCCCATGAATCCAATTGCTTAGTCCTGAAGAAGGCAGTGTCTATGTCA  329
      ||||||| |||||| | |||||||||||||||||||||||||||||||||
seq2  TTTCCCA-GAATCCCAATGCTTAGTCCTGAAGAAGGCAGTGTCTATGTCA  348

seq1  ACAATACAGACTTACTCTGGACTTCATTCATCTTTAGACTTTCACTCAGG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAATACAGACTTACTCTGGACTTCATTCATCTTTAGACTTTCACTCAGA  398

seq1  GCCTCCTCAGCT-CCCCATAGAGGGTGCTATTTTCTTTTACAGAAGGTAA  428
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCAGCTCCCCCATAGAGGGTGCTATTTTCTTTTACAGAAGGTAA  448

seq1  AGCTGAGGTATGAGGAGGTAAGCTGCCTAGTGTTTGCCTGCGTAGAGAGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGTATGAGGAGGTAAGCTGCCTAGTGTTTGCCTGCGTAGAGAGT  498

seq1  GGCACAGCTGGCTTTCACACTGGCAGTCTGACTTTAGGGTTCTTACTATT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCTGGCTTTCACACTGGCAGTCTGACTTTAGGGTTCTTACTATT  548

seq1  CACTCACCTACCACAGTCTTTCTCCCCAGCTTTCCCTCATACTAATGCAA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCTACCACAGTCTTTCTCCCCAGCTTTCCCTCATACTAATGCAA  598

seq1  GGTAGCTTTTCAATGCTTATGGCTTATCTACTCTATCACCTTTAAGACAA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTTTCAATGCTTATGGCTTATCTACTCTATCACCTTTAAGACAA  648

seq1  ACCACTTGCACCCAAACAAAACTTAAACATTTTGAACCTGGGATAGAATT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGCACCCAAACAAAACTTAAACATTTTGAACCTGGGATAGAATT  698

seq1  AGAGTTTTGATTTGCTGTTTCATCCTGACCTCTGTGCTACCCTGCATCTC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGATTTGCTGTTTCATCCTGACCTCTGTGCTACCCTGCATCTC  748

seq1  ATCAACTGCCCCTCTATATGTTATTGTTCTCCTGACTATGATGTATTCTG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGCCCCTCTATATGTTATTGTTCTCCTGACTATGATGTATTCTG  798

seq1  TCTTTCCTTCTCCGCGTGGGACTCTTTTCCTTTAGAGTCCATGCCAAAGG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCTCCGCGTGGGACTCTTTTCCTTTAGAGTCCATGCCAAAGG  848

seq1  TCTTCTTTGCCCTAGGTCTTCTTGGGATACTCAGCCCTTGCCATTTTCCT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGCCCTAGGTCTTCTTGGGATACTCAGCCCTTGCCATTTTCCT  898

seq1  TAGTATTTGTCACAATTTTTTAAAGATTTTTTCTATAAGCTCATACTTGC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTGTCACAATTTTTTAAAGATTTTTTCTATAAGCTCATACTTGC  948

seq1  ATAATTTGTGAGTTGAGATGGATATTATCATCAATACCAACAGATCTCAT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTGAGTTGAGATGGATATTATCATCAATACCAACAGATCTCAT  998

seq1  TCAGAAAAAAACAGTTATGTAATCATTTAAGGCAAACCAATAGCATTTAC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAAACAGTTATGTAATCATTTAAGGCAAACCAATAGCATTTAC  1048

seq1  AATGTGATATAAACACTACATCTACTAAGTTCTTAAATAATTGTCATGAC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATATAAACACTACATCTACTAAGTTCTTAAATAATTGTCATGAC  1098

seq1  GCAAAAGTAAAACCCCACATCCAATAAGCTACTTCATTCCACATTATTTC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTAAAACCCCACATCCAATAAGCTACTTCATTCCACATTATTTC  1148

seq1  CTTCCTCAGCCCTTGTCAATCCCCAGTTTGCACTCTGTCATTGAATTC  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGCCCTTGTCAATCCCCAGTTTGCACTCTGTCATTGAATTC  1196

seq1: chr3_99253341_99254411
seq2: B6Ng01-009K16.g_70_1135

seq1  GAATTCTTCTCTATGTGAGTATGAAATCATTCCCTGGGGGAAGGTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTATGTGAGTATGAAATCATTCCCTGGGGGAAGGTGCAGT  50

seq1  GTAGCACTAGTTGTATGCCATGAGCTCAATACAGAAGGTTTTGTTATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTAGTTGTATGCCATGAGCTCAATACAGAAGGTTTTGTTATTCC  100

seq1  ATAGGAAATCTCTTCAAGTATTTGAAAAGAAAATGGATATTATCCACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATCTCTTCAAGTATTTGAAAAGAAAATGGATATTATCCACCTT  150

seq1  AGGCTCACTTTTTATGCCAAACTTCCCAGAATTCCAAGTGACCCCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTTTTTATGCCAAACTTCCCAGAATTCCAAGTGACCCCTAGAT  200

seq1  ATAAATCTAGAATTCTTTACTCAACTAAAGTCTTATTAACAAGAGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTAGAATTCTTTACTCAACTAAAGTCTTATTAACAAGAGTTAGA  250

seq1  ATAAAATAAAGCCATATGTAGACGGATCTTCCACTTGACCTGATTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAGCCATATGTAGACGGATCTTCCACTTGACCTGATTCTGAG  300

seq1  GCTTCTGCCATTCTGTCCTATCTTGAATACTCCCATACTCCCATCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCCATTCTGTCCTATCTTGAATACTCCCATACTCCCATCACTGA  350

seq1  TATTATATGTTGATGCTAAAACCTTGCTAAAAGTACAAGAGTACTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTTGATGCTAAAACCTTGCTAAAAGTACAAGAGTACTCTTGA  400

seq1  CTCTTACGTGTCAGAGGCTCAAAAAGAAGGCAAAATTTGGGTGCTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACGTGTCAGAGGCTCAAAAAGAAGGCAAAATTTGGGTGCTATTAG  450

seq1  GACACCAGGACACACAGCCATAGACTCCAAAGGATGAAGGTCTGAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGACACACAGCCATAGACTCCAAAGGATGAAGGTCTGAACTGG  500

seq1  GAATCTCACATAAGGACAGTTCCTGGAATAGTCAAGATGAGGTATAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACATAAGGACAGTTCCTGGAATAGTCAAGATGAGGTATAGGTA  550

seq1  GGCATGGTAGCTGAATACAGGATTTTATGTAGTAAAGGTTAAGAAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTAGCTGAATACAGGATTTTATGTAGTAAAGGTTAAGAAACTGG  600

seq1  GAAGCTAAAAGCAAAAGGCAGAGGGAAGGAGAAGTAGTTTAGTTAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAAAGCAAAAGGCAGAGGGAAGGAGAAGTAGTTTAGTTAATAAA  650

seq1  GTGTTTGCTTTGTAAGCATGAAGACCCAAGTTCTCCAGAACTGAAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTTTGTAAGCATGAAGACCCAAGTTCTCCAGAACTGAAGTTAA  700

seq1  GAGGAAAGAGAGAAAAACAAACCTAGGTGAATTAGCATGTGCTTGCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGAGAGAAAAACAAACCTAGGTGAATTAGCATGTGCTTGCACTT  750

seq1  CCAGGTCTGTGTTGGTGGATTCCTGTGGC-TTTCTGGCCAGCCAGC--CC  797
      ||||||||||||||||||||||||||||| ||||||||||||||||  ||
seq2  CCAGGTCTGTGTTGGTGGATTCCTGTGGCTTTTCTGGCCAGCCAGCCTCC  800

seq1  CCCCCCCCCCACACACACACACTCCTCTACCCACCCACTCCCACTTCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACACACACACACTCCTCTACCCACCCACTCCCACTTCTTG  850

seq1  GCCCTGGCATTCCCCTGTACTGGGGCATATAAAG-TTTGCAAGATCAAGG  896
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTTGCAAGATCAAGG  900

seq1  GTCTCTCCTCCCAATGATGGCTGGCTAGGCTATCTTTCTGATACATATGC  946
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTCTCTCCTCCCAATGATGGCTGGCTAGGCTTTCTTTCTGATACATATGC  950

seq1  AGCTAGAGACACGAGTTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCC  996
      ||||||||||||||||||| |||||||||||||| ||||| |||   |||
seq2  AGCTAGAGACACGAGTTCT-GGGGTACTGGTTAG-TCATA-TGT--GTCC  995

seq1  ACCTATAGGGTTGCAGACCCTTTCAGCCCCTTGGGTACTTTCTCTAGCTC  1046
      |||||||||| |||||| ||||| ||  ||||||||||||||||||||| 
seq2  ACCTATAGGG-TGCAGA-CCTTTTAG-TCCTTGGGTACTTTCTCTAGCT-  1041

seq1  CTCCATTGGGGGCCCTGTGT---TCCAT  1071
      ||||||   ||| |||||||   |||||
seq2  CTCCAT---GGGGCCTGTGTCTATCCAT  1066