BAC Information

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BAC

Clone NameB6Ng01-009N21
Chromosome3 (Build37)
Map Location 79,616,805 - 79,781,846
singlet/doubletdoublet
Overlap geneTmem144, 1110032E23Rik
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009N21.bB6Ng01-009N21.g
ACCDH845695DH845696
length1,1431,098
definitionDH845695|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N21, 5' end.DH845696|Mus musculus domesticus DNA, BAC clone: B6Ng01-009N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,780,702 - 79,781,846)(79,616,805 - 79,617,913)
sequence
gaattctaaaaatactaactccatgcctgagatggctcacattcttccaa
gtagaggggaattgttgaaataattgacatgttgccagatgaatgccttc
aggtttcctcatttcttgggcctgctcttgccccagccactcagggctcc
tggctttcttggttagcatgtggctgaggtcgtcaggtcaacgctaccct
ctctccagaggccaccagtgcttgtgtgcgtattaagtgtctgtatatat
attggaatttattttcgattctttttctgccccaaggagacttcacaatg
ggctaaacataatgcaggtagaactgctgttagttgtttagtgactggca
tgggtctgggtgggatttgactgtttagacaaaagagggtcctaaatctc
acccccaagagaatcaaggaaggaaggaagtggtttctatgatggcatca
gttgctttcagagacaccaaggcccggtgacatatcaaaagcaaggagtt
ttcttagagaaaaaaaattaaatttgcattatacttaattcacttgatac
acactttaagtgtatagtctgtacagtgatccacaagtcagacctctgct
ctcaagaaagcctggttgtatgtaaaattagcccctaagcataatttatt
aaaaactaaaagatatcaatttggtcatatacaaaatttttcatgtgaca
ttttctaattgaaagaggtaaatgtataaaactagcattaaagtatattg
aaaattctttctaagccatgttctgagtatttccagatatcatataatct
gtcttaacactgtccaaggcttctatgctcaaaattgcacatgttgttgc
acagactgtattctgactatcggctgtggcattcatccaaccttccagtt
tttaggattcagatggacagtgggtgttgacaacattgttcctcttccca
cgccaggcatttcaagggaaatgtccacagtggaacagggaaaacgtcta
atgccaataaaaggtgctgttctaaacaatatttgtcacctggtgcaatg
cccagtcttactcggaactggaaactttcatggcctcaagcctgtaagtt
cacattaagcagctcttacggtcaaattctctatgtaaatctc
gaattcaaggcacatgctatcgctagccctccttcccaggaagcctgcca
tgccgagagagctctcaggtccaaagctgcacaactcagacggagcatct
gaggtttaagccgaggcaggtgcaggatgctattctgttgctctggcaca
acaaagtactgcaatatcaggagagaatgggtgaaaggcacagccaaaca
ccattattctattaagggtgcagagagcatgattgtgagcaatgtgcctg
tgtttttttttttttcccttaaagaatcaaatcaatatatatgctacctt
cttttgtctcctggaaatcagttaaaatagggtcaaaagaaacacttcca
gttaaaatgatcttttaagtaactgtgtttaaggaggaaaaaattagttg
tgcagtcaaacaagtcggcttcctttaagttgaacgtgatgaactaaaac
tgctatttcagcaactctagaatgtgtccaaatctgaaaccatgcacaca
cgtatgtgtgcttgtgaatgtatacattatatcacacgtacataggagtg
gtggtgacctgctctctgaggatccgttttatctggaataattatcaaac
attttgagctaagaaggtcaggcaagataaagagcggagtagtattaaag
taataatttttggccaaaaaaaaaaagaaatggcattttaaacattcagg
ttgcaactatgacatttgctcttagcaaaggggccgatatctttgaatgt
aaattccacaaggtatgtgtgtgttccttcccacaaccaagaaagtactt
attttgggtcctctttattaataaattataaattgggatggtaatttctt
ttgtacaaacttccatcctatttttctggattatagtattaagtagacat
tgttagacaggatgatccgatatgcctttgagccacccagcgaggtccag
cttcgttatagctcatcgaaagagttttcacacacgctgaactgacacgg
tcctctctcgcgtctcccgttggtggagcacagcaatttattcgttcatt
ccagattgcagagaaccacaggcccagcttaactgcctgtatgttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79780702_79781846
seq2: B6Ng01-009N21.b_48_1190 (reverse)

seq1  GAGATTTACATAGAGAATTTTAGACAGTAAGGGCTGCTTATTGGTGGAAA  50
      ||||||||||||||||||||  ||| ||||| |||||||| | |||  ||
seq2  GAGATTTACATAGAGAATTT--GACCGTAAGAGCTGCTTAAT-GTG--AA  45

seq1  CTTACAAGGCTTGAAGCCATGAAAAGTTTTCCAGTTCTGAGTAGACCTTG  100
      ||||| |||||||| |||||||||   |||||||||| |||||   || |
seq2  CTTAC-AGGCTTGAGGCCATGAAA--GTTTCCAGTTCCGAGTAAGACTGG  92

seq1  GCATTTGCAC--AGTGAC-AATATTGTTTAGAACAAGCCCCTTTTAATGG  147
      ||| ||||||   ||||| ||||||||||||||| ||| ||||||| |||
seq2  GCA-TTGCACCAGGTGACAAATATTGTTTAGAAC-AGCACCTTTTATTGG  140

seq1  CATT-GACGTTTT-CCTGTTCCACTGTGGACATTTCCCTTG-AATGCCT-  193
      |||| |||||||| ||||||||||||||||||||||||||| ||||||| 
seq2  CATTAGACGTTTTCCCTGTTCCACTGTGGACATTTCCCTTGAAATGCCTG  190

seq1  GCGTGGGAAGAGGAACAATGTTGTCAACACCCACTGTCCATCTGAATCCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGAAGAGGAACAATGTTGTCAACACCCACTGTCCATCTGAATCCT  240

seq1  AAAAACTGG-AGGTTGGATGAATGCCACAGCCGATAGTCAGAATACAGTC  292
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGGAAGGTTGGATGAATGCCACAGCCGATAGTCAGAATACAGTC  290

seq1  TGTGCAACAACATGTGCAATTTTGAGCATAGAAGCCTTGGACAGTGTTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACAACATGTGCAATTTTGAGCATAGAAGCCTTGGACAGTGTTAA  340

seq1  GACAGATTATATGATATCTGGAAATACTCAGAACATGGCTTAGGAAGAAT  392
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACAGATTATATGATATCTGGAAATACTCAGAACATGGCTTAGAAAGAAT  390

seq1  TTTCAATATACTTTAATGCTAGTTTTATACATTTACCTCTTTCAATTAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATACTTTAATGCTAGTTTTATACATTTACCTCTTTCAATTAGA  440

seq1  AAATGTCACATGAAAAATTTTGTATATGACCAAATTGATATCTTTTAGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACATGAAAAATTTTGTATATGACCAAATTGATATCTTTTAGTT  490

seq1  TTTAATAAATTATGCTTAGGGGCTAATTTTACATACAACCAGGCTTTCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAATTATGCTTAGGGGCTAATTTTACATACAACCAGGCTTTCTT  540

seq1  GAGAGCAGAGGTCTGACTTGTGGATCACTGTACAGACTATACACTTAAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGGTCTGACTTGTGGATCACTGTACAGACTATACACTTAAAG  590

seq1  TGTGTATCAAGTGAATTAAGTATAATGCAAATTTAATTTTTTTTCTCTAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCAAGTGAATTAAGTATAATGCAAATTTAATTTTTTTTCTCTAA  640

seq1  GAAAACTCCTTGCTTTTGATATGTCACCGGGCCTTGGTGTCTCTGAAAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCTTGCTTTTGATATGTCACCGGGCCTTGGTGTCTCTGAAAGC  690

seq1  AACTGATGCCATCATAGAAACCACTTCCTTCCTTCCTTGATTCTCTTGGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGCCATCATAGAAACCACTTCCTTCCTTCCTTGATTCTCTTGGG  740

seq1  GGTGAGATTTAGGACCCTCTTTTGTCTAAACAGTCAAATCCCACCCAGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATTTAGGACCCTCTTTTGTCTAAACAGTCAAATCCCACCCAGAC  790

seq1  CCATGCCAGTCACTAAACAACTAACAGCAGTTCTACCTGCATTATGTTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGTCACTAAACAACTAACAGCAGTTCTACCTGCATTATGTTTA  840

seq1  GCCCATTGTGAAGTCTCCTTGGGGCAGAAAAAGAATCGAAAATAAATTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGTGAAGTCTCCTTGGGGCAGAAAAAGAATCGAAAATAAATTCC  890

seq1  AATATATATACAGACACTTAATACGCACACAAGCACTGGTGGCCTCTGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATACAGACACTTAATACGCACACAAGCACTGGTGGCCTCTGGA  940

seq1  GAGAGGGTAGCGTTGACCTGACGACCTCAGCCACATGCTAACCAAGAAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTAGCGTTGACCTGACGACCTCAGCCACATGCTAACCAAGAAAG  990

seq1  CCAGGAGCCCTGAGTGGCTGGGGCAAGAGCAGGCCCAAGAAATGAGGAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCCTGAGTGGCTGGGGCAAGAGCAGGCCCAAGAAATGAGGAAA  1040

seq1  CCTGAAGGCATTCATCTGGCAACATGTCAATTATTTCAACAATTCCCCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGCATTCATCTGGCAACATGTCAATTATTTCAACAATTCCCCTC  1090

seq1  TACTTGGAAGAATGTGAGCCATCTCAGGCATGGAGTTAGTATTTTTAGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGAAGAATGTGAGCCATCTCAGGCATGGAGTTAGTATTTTTAGAA  1140

seq1  TTC  1145
      |||
seq2  TTC  1143

seq1: chr3_79616805_79617913
seq2: B6Ng01-009N21.g_66_1163

seq1  GAATTCAAGGCACATGCTATCGCTAGCCCTCCTTCCCAGGAAGCCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCACATGCTATCGCTAGCCCTCCTTCCCAGGAAGCCTGCCA  50

seq1  TGCCGAGAGAGCTCTCAGGTCCAAAGCTGCACAACTCAGACGGAGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGAGAGCTCTCAGGTCCAAAGCTGCACAACTCAGACGGAGCATCT  100

seq1  GAGGTTTAAGCCGAGGCAGGTGCAGGATGCTATTCTGTTGCTCTGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAAGCCGAGGCAGGTGCAGGATGCTATTCTGTTGCTCTGGCACA  150

seq1  ACAAAGTACTGCAATATCAGGAGAGAATGGGTGAAAGGCACAGCCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTACTGCAATATCAGGAGAGAATGGGTGAAAGGCACAGCCAAACA  200

seq1  CCATTATTCTATTAAGGGTGCAGAGAGCATGATTGTGAGCAATGTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTCTATTAAGGGTGCAGAGAGCATGATTGTGAGCAATGTGCCTG  250

seq1  TGTTTTTTTTTTTTTCCCTTAAAGAATCAAATCAATATATATGCTACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTTTTCCCTTAAAGAATCAAATCAATATATATGCTACCTT  300

seq1  CTTTTGTCTCCTGGAAATCAGTTAAAATAGGGTCAAAAGAAACACTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTCCTGGAAATCAGTTAAAATAGGGTCAAAAGAAACACTTCCA  350

seq1  GTTAAAATGATCTTTTAAGTAACTGTGTTTAAGGAGGAAAAAATTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATGATCTTTTAAGTAACTGTGTTTAAGGAGGAAAAAATTAGTTG  400

seq1  TGCAGTCAAACAAGTCGGCTTCCTTTAAGTTGAACGTGATGAACTAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAAACAAGTCGGCTTCCTTTAAGTTGAACGTGATGAACTAAAAC  450

seq1  TGCTATTTCAGCAACTCTAGAATGTGTCCAAATCTGAAACCATGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTCAGCAACTCTAGAATGTGTCCAAATCTGAAACCATGCACACA  500

seq1  CGTATGTGTGCTTGTGAATGTATACATTATATCACACGTACATAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGTGTGCTTGTGAATGTATACATTATATCACACGTACATAGGAGTG  550

seq1  GTGGTGACCTGCTCTCTGAGGATCCGTTTTATCTGGAATAATTATCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACCTGCTCTCTGAGGATCCGTTTTATCTGGAATAATTATCAAAC  600

seq1  ATTTTGAGCTAAGAAGGTCAGGCAAGATAAAGAGCGGAGTAGTATTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGCTAAGAAGGTCAGGCAAGATAAAGAGCGGAGTAGTATTAAAG  650

seq1  TAATAATTTTTGGCCAAAAAAAAAAAGAAATGGCATTTTAAACATTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTTTGGCCAAAAAAAAAAAGAAATGGCATTTTAAACATTCAGG  700

seq1  TTGCAACTATGACATTTGCTCTTAGCAAAGGGGCCGATATCTTTGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTATGACATTTGCTCTTAGCAAAGGGGCCGATATCTTTGAATGT  750

seq1  AAATTCCACAAGGTATGTGTGTGTTCCTTCCCACAACCAAGAAAGTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCACAAGGTATGTGTGTGTTCCTTCCCACAACCAAGAAAGTACTT  800

seq1  ATTTTGGGTCCTCTTTATTAATAAATTATAAATTGGGATGGTAATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGTCCTCTTTATTAATAAATTATAAATTGGGATGGTAATTTCTT  850

seq1  TTGTACAAAC-TCCATCCTA-TTTTCTGGATTATAGTATTAAGTAGACAT  898
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TTGTACAAACTTCCATCCTATTTTTCTGGATTATAGTATTAAGTAGACAT  900

seq1  TGTTAGACAGGATGATCCGATATGCCTTTGAGCCACCCAGCGAGGTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGACAGGATGATCCGATATGCCTTTGAGCCACCCAGCGAGGTCCAG  950

seq1  CCTTCGTTAATAGCTCATCGAAAAGAGTTTTCACACACGCTGAACTGAAA  998
       ||||||| ||||||||||| ||||||||||||||||||||||||||  |
seq2  -CTTCGTT-ATAGCTCATCG-AAAGAGTTTTCACACACGCTGAACTG--A  995

seq1  CACGGTCTCTCT-TCGCGTTCTCACGTTGGTGGAGCCAACAGCCATTTAT  1047
      ||||||| |||| ||||| |||| ||||||||||||  ||||| ||||||
seq2  CACGGTC-CTCTCTCGCG-TCTCCCGTTGGTGGAGC--ACAGCAATTTAT  1041

seq1  CCGTTCATTCCCAGAGTGGCAGAGACCCACAGTGCCACAGCTTAGCTGCC  1097
       |||||||| ||||| | ||||||| |||||| ||| ||||||| |||||
seq2  TCGTTCATT-CCAGA-TTGCAGAGAACCACAG-GCC-CAGCTTAACTGCC  1087

seq1  TGTAGTGTTAGC  1109
      |||| |||||||
seq2  TGTA-TGTTAGC  1098