BAC Information

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BAC

Clone NameB6Ng01-010A18
Chromosome3 (Build37)
Map Location 116,276,196 - 116,379,677
singlet/doubletdoublet
Overlap geneLrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3
Upstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705
Downstream geneAgl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010A18.bB6Ng01-010A18.g
ACCDH845829DH845830
length550178
definitionDH845829|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A18, 5' end.DH845830|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,379,122 - 116,379,677)(116,276,196 - 116,276,373)
sequence
aacagggaataaatagatgaataacagcatttccttgaaatattgattca
aacataatttgcagtaagtccagtgggataattcatgactttataactta
aacttccgtcattatagaaggcagttagagtggctacccttggtttggtt
tggaagcagatatatagggtttggtttggaagcagatatatagggtttgg
tttggaagcagatatatagggtttggtagaaaataaagccaggtcataca
gatgctcttttatcatttgagagaattaagggtgtgagattttggaatat
ttgcatatacataataagaaaatctgttactgtgactcaaatctaaacaa
aattttgttttatgtacgagcatacacatagcctggaagtaagataatac
agtttaaaatccacctgtgtggtatgactaacccattaaatgtggcaggt
gtagaattttcatctgcgcatcaaagtgtagggtttgggagcattttgga
tttttgtatagtaagtaaagtctcgtgtgtgtgtgtgtgtgtgtgtgtgt

atttttattcttgccttgaatgtagaagctggagaaacagcatgacctac
taaatcgagtcacgctgctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtacacatacgtacattcatataggccagatgttctc
aggtgttttccccaatcacaagctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116379122_116379677
seq2: B6Ng01-010A18.b_47_602 (reverse)

seq1  ACACACACACACACACACACACACACGAGACTTTACTTACTATACAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACGAGACTTTACTTACTATACAAAAA  50

seq1  TCCAAAATGCTCCCAAACCCTACACTTTGATGCGCAGATGAAAATTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGCTCCCAAACCCTACACTTTGATGCGCAGATGAAAATTCTAC  100

seq1  ACCTGCCACATTTAATGGGTTAGTCATACCACACAGGTGGATTTTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCACATTTAATGGGTTAGTCATACCACACAGGTGGATTTTAAACT  150

seq1  GTATTATCTTACTTCCAGGCTATGTGTATGCTCGTACATAAAACAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCTTACTTCCAGGCTATGTGTATGCTCGTACATAAAACAAAATT  200

seq1  TTGTTTAGATTTGAGTCACAGTAACAGATTTTCTTATTATGTATATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGATTTGAGTCACAGTAACAGATTTTCTTATTATGTATATGCAA  250

seq1  ATATTCCAAAATCTCACACCCTTAATTCTCTCAAATGATAAAAGAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCAAAATCTCACACCCTTAATTCTCTCAAATGATAAAAGAGCATC  300

seq1  TGTATGACCTGGCTTTATTTTCTACCAAACCCTATATATCTGCTTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACCTGGCTTTATTTTCTACCAAACCCTATATATCTGCTTCCAAA  350

seq1  CCAAACCCTATATATCTGCTTCCAAACCAAACCCTATATATCTGCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTATATATCTGCTTCCAAACCAAACCCTATATATCTGCTTCCA  400

seq1  AACCAAACCAAGGGTAGCCACTCTAACTGCCTTCTATAATGACGGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAGGGTAGCCACTCTAACTGCCTTCTATAATGACGGAAGTT  450

seq1  TAAGTTATAAAGTCATGAATTATCCCACTGGACTTACTGCAAATTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATAAAGTCATGAATTATCCCACTGGACTTACTGCAAATTATGTT  500

seq1  TGAATCAATATTTCAAGGAAATGCTGTTATTCATCTATTTATTCCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAATATTTCAAGGAAATGCTGTTATTCATCTATTTATTCCCTGTT  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556

seq1: chr3_116276196_116276373
seq2: B6Ng01-010A18.g_68_245

seq1  ATTTTTATTCTTGCCTTGAATGTAGAAGCTGGAGAAACAGCATGACCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTCTTGCCTTGAATGTAGAAGCTGGAGAAACAGCATGACCTAC  50

seq1  TAAATCGAGTCACGCTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGAGTCACGCTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTACACGTACGTACATACATATAGGCCAGATGTGCTC  150
      ||||||||||||||||||| ||||||||| |||||||||||||||| |||
seq2  TGTGTGTGTGTGTGTACACATACGTACATTCATATAGGCCAGATGTTCTC  150

seq1  AGGTGTTTTCCCCAATCACAAGCTGCTG  178
      ||||||||||||||||||||||||||||
seq2  AGGTGTTTTCCCCAATCACAAGCTGCTG  178