BAC Information

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BAC

Clone NameB6Ng01-010D03
Chromosome8 (Build37)3 (Build37)
Map Location 50,942,069 - 50,942,47173,901,500 - 73,902,553
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D03.bB6Ng01-010D03.g
ACCDH845931DH845932
length9491,046
definitionDH845931|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D03, 5' end.DH845932|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,942,069 - 50,942,471)(73,901,500 - 73,902,553)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggtt
ctttctgtggtttaggtatcagagtaataatggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtacagaactgg
aatacactgaaacttatagaggagaaagtggggaaaagccttgaagatat
gggcacagtggaaaaattcctgaacaagtagcatcgatattcataagaga
aattggtctgaagttctctatctttgttggatctttctgtggtttaggta
tcagagtaatagtggcttcataaaatgagttgggtggagtaccttctact
tctattttgtgaaatagtttgtacagaactggaatacactgaaacttata
gaggagaaagtggggaaaagccttgaagatatgggcacagtggaaaaatt
cctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat
gggacctaatgaaactccaaaatttctgcaaggcaaaagacaccgtcaat
aagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaa
atcagataggggactaatatccaacatatataaagaactcaagaacgtag
acttcagaaatcaaataaccccattaaaaaatggggcttagactgaaca
gaattcccctacacctgggaatggagtcttcacaggactgagggccttgt
ttcccattgatgccaaacaaggccatcctctgctacatatgcagttggag
ccatgggtccctccatgtgtactctttggttggtggtttagtccctggta
actttggagaggtgtgtgtgtgtctggattgttgatattgttcttcttat
ggggttgcaaatcctatcagctcctttagtcctttctctaactcctccat
tggagaccctgtgctcagtccagtggttggctacgagcatctgcctctgt
attcaccaacaacagtttgtgaatttattattattttttgatctctttcc
ccccttttttcttttttttttaagatcataatataattccttaatttctc
tacttacccccctcaaaacccttctatatgattcatctctttccaattta
tggcttctttctttaaattgtaggcagtgatattgatgagacatcatggg
tatagcttcgcaaattactagaagacacactctcacaggaaattctctca
tcccctgacttttgtaatatttgtgtcccctcttctacaatgaaaaatta
ttaaattgtgagttataaaagtgacacattttaatgacaggtttaacaat
ttgtgtcaataatgttatggaaggcctaatagttcccttgggatgagaaa
tatttttttaacatctgggaatagtgtttatttgcactgtttatgtacaa
aatacaaaattaaagtttaaaagttataagcattctattactaaggttta
tactatttaagctttactttctgtatttatttcagaaatactgaagatct
ttgtgaatctgcagtgaacacttttatcatagcatgatgttaggttaaaa
ttgtgtgagctcacactgtgaaatacaaagccatcaattaaatacatctt
tggatgggacttgcaaagagatctatcaaatctttatatgtaatatatgc
atgcatagtacatgtagctttaatcataattattagaatgatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50942069_50942471
seq2: B6Ng01-010D03.b_45_447 (reverse)

seq1  ATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTCTGTACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  50

seq1  ACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCCAACTCATTTTATGAAGCCATTATTACTCTGATACCTAAACCACAGA  100

seq1  AAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATC  150

seq1  GATGCAAAAATCCTCAATAAAATTCTTGCTAACCGAATCCAAGAACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAAATCCTCAATAAAATTCTTGCTAACCGAATCCAAGAACACAT  200

seq1  TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGG  250

seq1  GATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA  300

seq1  CTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATT  350

seq1  TGACAAGATTCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAAGAA  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGACAAGATTCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAA  400

seq1  TTC  403
      |||
seq2  TTC  403

seq1: chr3_73901500_73902553
seq2: B6Ng01-010D03.g_63_1108

seq1  GAATTCCCCTACACCTGGGAATGGAGTCTTCACAGGACTGAGGGCCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACACCTGGGAATGGAGTCTTCACAGGACTGAGGGCCTTGT  50

seq1  TTCCCATTGATGCCAAACAAGGCCATCCTCTGCTACATATGCAGTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGATGCCAAACAAGGCCATCCTCTGCTACATATGCAGTTGGAG  100

seq1  CCATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGTA  150

seq1  ACTTTGGAGAGGTGTGTGTGTGTCTGGATTGTTGATATTGTTCTTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGAGGTGTGTGTGTGTCTGGATTGTTGATATTGTTCTTCTTAT  200

seq1  GGGGTTGCAAATCCTATCAGCTCCTTTAGTCCTTTCTCTAACTCCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCAAATCCTATCAGCTCCTTTAGTCCTTTCTCTAACTCCTCCAT  250

seq1  TGGAGACCCTGTGCTCAGTCCAGTGGTTGGCTACGAGCATCTGCCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCCTGTGCTCAGTCCAGTGGTTGGCTACGAGCATCTGCCTCTGT  300

seq1  ATTCACCAACAACAGTTTGTGAATTTATTATTATTTTTTGATCTCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAACAACAGTTTGTGAATTTATTATTATTTTTTGATCTCTTTCC  350

seq1  CCCCTTTTTTCTTTTTTTTTTAAGATCATAATATAATTCCTTAATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTTCTTTTTTTTTTAAGATCATAATATAATTCCTTAATTTCTC  400

seq1  TACTTACCCCCCTCAAAACCCTTCTATATGATTCATCTCTTTCCAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCCCCCTCAAAACCCTTCTATATGATTCATCTCTTTCCAATTTA  450

seq1  TGGCTTCTTTCTTTAAATTGTAGGCAGTGATATTGATGAGACATCATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTCTTTAAATTGTAGGCAGTGATATTGATGAGACATCATGGG  500

seq1  TATAGCTTCGCAAATTACTAGAAGACACACTCTCACAGGAAATTCTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTCGCAAATTACTAGAAGACACACTCTCACAGGAAATTCTCTCA  550

seq1  TCCCCTGACTTTTGTAATATTTGTGTCCCCTCTTCTACAATGAAAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGACTTTTGTAATATTTGTGTCCCCTCTTCTACAATGAAAAATTA  600

seq1  TTAAATTGTGAGTTATAAAAGTGACACATTTTAATGACAGGTTTAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTGAGTTATAAAAGTGACACATTTTAATGACAGGTTTAACAAT  650

seq1  TTGTGTCAATAATGTTATGGAAGGCCTAATAGTTCCCTTGGGATGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAATAATGTTATGGAAGGCCTAATAGTTCCCTTGGGATGAGAAA  700

seq1  TATTTTTTTAACATCTGGGAATAGTGTTTATTTGCACTGTTTATGTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAACATCTGGGAATAGTGTTTATTTGCACTGTTTATGTACAA  750

seq1  AATACAAAATTAAAGTTTAAAAGTTATAAGCATTCTATTACTAAGGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAATTAAAGTTTAAAAGTTATAAGCATTCTATTACTAAGGTTTA  800

seq1  TACTATTTAAGCTTTACTTTCTGTATTTATTTCAGAAATACTGAAGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTAAGCTTTACTTTCTGTATTTATTTCAGAAATACTGAAGATCT  850

seq1  TTGTGAATCTGCAGTGAACACTTTTATCATAGCATGATGTTAGGTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATCTGCAGTGAACACTTTTATCATAGCATGATGTTAGGTTAAAA  900

seq1  TTGTGTGAGCTCACACTGTGAAATACAAAGCCATCAATTAAATACATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAGCTCACACTGTGAAATACAAAGCCATCAATTAAATACATCTT  950

seq1  TGGATTGGGACTTGCAAAAGAGATTCTATTCAAATCTTTATATGTAATTA  1000
      |||| |||||||||| ||||||| |||| |||||||||||||||||| ||
seq2  TGGA-TGGGACTTGC-AAAGAGA-TCTA-TCAAATCTTTATATGTAA-TA  995

seq1  TATGCATGCATAGTAACATGTAGCTATAAATCATAATTACTTAGAATGAT  1050
      |||||||||||||| |||||||||| | ||||||||||| ||||||||||
seq2  TATGCATGCATAGT-ACATGTAGCT-TTAATCATAATTA-TTAGAATGAT  1042

seq1  TTAA  1054
      ||||
seq2  TTAA  1046