BAC Information

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BAC

Clone NameB6Ng01-010F09
Chromosome3 (Build37)
Map Location 51,588,711 - 51,701,145
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010F09.bB6Ng01-010F09.g
ACCDH846031DH846032
length1,042380
definitionDH846031|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F09, 5' end.DH846032|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,588,711 - 51,589,764)(51,700,760 - 51,701,145)
sequence
gaattcaaagagacgcaaaatagacggaaaggaccacaacacaggtggtc
agcctagaaggggcaacattaaataacagcagtttcacactgccacaagg
gctcattggaagatgtcgtgaagtcctacaagaaaactctccaggaccaa
aagataggaacttccagtccctgaacaatgaatgcaaaaattattacagt
ggggcacatcaccatggaattccaaaacgccaaggaataaaacagatatt
ctgaaagcctctggaagcttcctgagggggcctgaatgggaagcttctga
aagcctctggaagcttcctgagggggtctgaatgggaagcttctggaagc
ttcctgagggggtctgaatggggcagagtcagctttctgacaggaacaga
ggcggttcacctccgttcctgtgaagcatggagaggttcagacttccttt
ttaaaggcatttgcagcttggtgtcctacattcagttagactaagtatga
atcgacctccccacgtgcaagtgctcaaaaaaccatctctcctctctcct
cagcgttagatcaaagacctgtagctgcccatttccctcaggccctgctc
cctgcctctctctctgggacagatgtggccttgcaggctgcccatcgtcc
ttacagatgtgagatatgctcatggtcctacttactgcctgctttcatgg
ctcctggtacataggttaggtcaggcaaggtcacatggtgtgggacttac
cctggtgccctgaaaccttccaagacagagaaatgccatttgtcatagga
atctgaaggaacaaaggatctagaggctcttatatcgtctagtaggccac
atggctgctcatagccatgattctatgtctccttctcccttcagacctca
ttgcactgtctgcagtacaatgttccatcttttctaagcccctccactca
agtccaaccatggttgcgcacggcagtgacatactctctctataaagtct
tgagtgaaattgctgtcagctctttcagtgaaacgttttcta
tccattcagtgagcgatcctgtggtgagattgtgaggtgggtcagtggat
ggaggtacaggcctaatgacctgagctcaacccttagactccacatacaa
acggaagaggagaacctgggccgcaggggtccactgaacgccacctgtgc
accatgacacacccattgtgcgtgtgcacacacacaaagaaaatattata
aaggaaaagagactagattggggggggggtggcagaggcataagcaggtg
gatccctgagtttcaaggccagcctggtctacagagcaagttccaggata
gctagggctacacagagaaaccctgtctcaacaacaaacaaagaacagag
agagggaggagggaagaaaggatggatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51588711_51589764
seq2: B6Ng01-010F09.b_48_1089

seq1  GAATTCAAAGAGACGCAAAATAGACGGAAAGGACCACAACACAGGTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGACGCAAAATAGACGGAAAGGACCACAACACAGGTGGTC  50

seq1  AGCCTAGAAGGGGCAACATTAAATAACAGCAGTTTCACACTGCCACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAAGGGGCAACATTAAATAACAGCAGTTTCACACTGCCACAAGG  100

seq1  GCTCATTGGAAGATGTCGTGAAGTCCTACAAGAAAACTCTCCAGGACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGGAAGATGTCGTGAAGTCCTACAAGAAAACTCTCCAGGACCAA  150

seq1  AAGATAGGAACTTCCAGTCCCTGAACAATGAATGCAAAAATTATTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGAACTTCCAGTCCCTGAACAATGAATGCAAAAATTATTACAGT  200

seq1  GGGGCACATCACCATGGAATTCCAAAACGCCAAGGAATAAAACAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACATCACCATGGAATTCCAAAACGCCAAGGAATAAAACAGATATT  250

seq1  CTGAAAGCCTCTGGAAGCTTCCTGAGGGGGCCTGAATGGGAAGCTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCCTCTGGAAGCTTCCTGAGGGGGCCTGAATGGGAAGCTTCTGA  300

seq1  AAGCCTCTGGAAGCTTCCTGAGGGGGTCTGAATGGGAAGCTTCTGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTGGAAGCTTCCTGAGGGGGTCTGAATGGGAAGCTTCTGGAAGC  350

seq1  TTCCTGAGGGGGTCTGAATGGGGCAGAGTCAGCTTTCTGACAGGAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGGGGGTCTGAATGGGGCAGAGTCAGCTTTCTGACAGGAACAGA  400

seq1  GGCGGTTCACCTCCGTTCCTGTGAAGCATGGAGAGGTTCAGACTTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTTCACCTCCGTTCCTGTGAAGCATGGAGAGGTTCAGACTTCCTTT  450

seq1  TTAAAGGCATTTGCAGCTTGGTGTCCTACATTCAGTTAGACTAAGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCATTTGCAGCTTGGTGTCCTACATTCAGTTAGACTAAGTATGA  500

seq1  ATCGACCTCCCCACGTGCAAGTGCTCAAAAAACCATCTCTCCTCTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACCTCCCCACGTGCAAGTGCTCAAAAAACCATCTCTCCTCTCTCCT  550

seq1  CAGCGTTAGATCAAAGACCTGTAGCTGCCCATTTCCCTCAGGCCCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTAGATCAAAGACCTGTAGCTGCCCATTTCCCTCAGGCCCTGCTC  600

seq1  CCTGCCTCTCTCTCTGGGACAGATGTGGCCTTGCAGGCTGCCCATCGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCTCTCTGGGACAGATGTGGCCTTGCAGGCTGCCCATCGTCC  650

seq1  TTACAGATGTGAGATATGCTCATGGTCCTACTTACTGCCTGCTTTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGTGAGATATGCTCATGGTCCTACTTACTGCCTGCTTTCATGG  700

seq1  CTCCTGGTACATAGGTTAGGTCAGGCAAGGTCACATGGTGTGGGACTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTACATAGGTTAGGTCAGGCAAGGTCACATGGTGTGGGACTTAC  750

seq1  CCTGGTGCCCTGAAACCTTCCAAGACAGAGAAATGCCATTTGTCATAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCCCTGAAACCTTCCAAGACAGAGAAATGCCATTTGTCATAGGA  800

seq1  ATCTGAAGGGAACAAAGGATCTAGAGGCTCCTAATATCGTCTAGTAGGCC  850
      ||||||| ||||||||||||||||||||| || |||||||||||||||||
seq2  ATCTGAA-GGAACAAAGGATCTAGAGGCT-CTTATATCGTCTAGTAGGCC  848

seq1  ACATGGCTGCTCATAGCCATGATTCTATGTCTCCCTCTCCCTTCAAGACC  900
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  ACATGGCTGCTCATAGCCATGATTCTATGTCTCCTTCTCCCTTC-AGACC  897

seq1  TCATTGCACTGTCTGCAGTACAATGTTCCATCTTTTCTAAGCCCCTCCCA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCATTGCACTGTCTGCAGTACAATGTTCCATCTTTTCTAAGCCCCT-CCA  946

seq1  CTCAAGGTCCAACCATGGTTGCGCACGGCAGTGACATACTCTCTCCTAAT  1000
      ||||| |||||||||||||||||||||||||||||||||||||||   ||
seq2  CTCAA-GTCCAACCATGGTTGCGCACGGCAGTGACATACTCTCTC--TAT  993

seq1  AAAGTCCTTGAAGTGTAATTTGCTGTCAGCTCCTTCCAGTGAACACGTTT  1050
      ||||| |||| |||| || |||||||||||| ||| ||||||| ||||||
seq2  AAAGT-CTTG-AGTG-AAATTGCTGTCAGCT-CTTTCAGTGAA-ACGTTT  1038

seq1  TCTA  1054
      ||||
seq2  TCTA  1042

seq1: chr3_51700760_51701145
seq2: B6Ng01-010F09.g_66_451 (reverse)

seq1  TCCATCCATCCTTTCTTCCCTCCTCCCTCTCTCTGTTCTTTGTTTGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCTTTCTTCCCTCCTCCCTCTCTCTGTTCTTTGTTTGTTGT  50

seq1  TGAGACAGGGTTTCTCTGTGTAGCCCTAGCTATCCTGGAACTTGCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTGTAGCCCTAGCTATCCTGGAACTTGCTCTGT  100

seq1  AGACCAGGCTGGCCTTGAAACTCAGGGATCCACCTGCTTATGCCTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAAACTCAGGGATCCACCTGCTTATGCCTCTGCC  150

seq1  ACCCCCCCCCCAATCTAGTCTCTTTTCCTTTATAATATTTTCTTTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCAATCTAGTCTCTTTTCCTTTATAATATTTTCTTTGTGTG  200

seq1  TGTGCACACGCACAATGGGTGTGTCATGGTGCACAGGTGGCGTTCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACGCACAATGGGTGTGTCATGGTGCACAGGTGGCGTTCAGTGG  250

seq1  ACCCCTGCGGCCCAGGTTCTCCTCTTCCGTTTGTATGTGGAGTCTAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCGGCCCAGGTTCTCCTCTTCCGTTTGTATGTGGAGTCTAAGGG  300

seq1  TTGAGCTCAGGTCATTAGGCCTGTACCTCCATCCACTGACCCACCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCAGGTCATTAGGCCTGTACCTCCATCCACTGACCCACCTCACA  350

seq1  ATCTCACCACAGGATCGCTCACTGAATGGAGAATTC  386
      ||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCACAGGATCGCTCACTGAATGGAGAATTC  386