BAC Information

Click to search

BAC

Clone NameB6Ng01-010H11
Chromosome3 (Build37)
Map Location 122,760,696 - 122,761,763
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H11.bB6Ng01-010H11.g
ACCDH846128DH846129
length2521,062
definitionDH846128|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H11, 5' end.DH846129|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctctccatacttttaacatgaaggggtgttgtattttgtcaaatg
ctttttcttttcttttcttttctttttttaaaaaatagttttagagcttt
attgcagaaaggcagagagaaagagagaaggtagaaagagggagagaggg
ggaagggagagagagaaggagggctagagaggacagtaagataggcaaat
gcttaaacataaatgctttttctgcttctaatgagatgatgttgtgattt
tt
gaattctcaggttcgttcaggtcaggaaacaccttcactataggatttct
gaggcaggagatttgtatatggatgccttggttacattattgttctttac
tcttttatctttgggcaatgaaatgttgctagagaagagaggataagaaa
gcaatgtcagtggggcagtggtggcgcacgcctttaatcccagcacttgg
gaggcggaggcaggtggatttctgagttcgaggacagcctggtctacagc
gtgagttccaggacagccagggctaaacagagaagccctgtctcaaaaaa
accaaaagcaagcaagcaagcaagcaagcaagcaagcaaagatcaggaag
aatattcatttggggcagggatctctcacacattccaggcagggcttaac
ctgttttctttgccttaccctgcttatgatttttgccaagttggtttcac
agtgggaaagctgattgtttacacatgctcaaacatttgctcgctgaccc
cacggttgggtgcacctttgggataaccaaagataaagaagctaagatga
atttaattttatccatctcctgtagactgttgaaaataaacaacaacaca
tagaagcaggaatacgtatacctcatcgtgcacggtttccataacacaga
cacagaagctctcacacagttcaaggcttgtaaccatgctacagcaccgg
ctcagccaaccctcttcggaaccaaacaaggaactacatgactcccagcc
cagtgggaactacatgactctacagcccagtgggaactacatgactcggt
caacatcacaggatagaaccgctcctaggaatatagctcccgatttgggc
ataacaatttctttccactatgccatgtgtctgggtaacacacaatttct
atttcatagaaaatgatgagtgtgttcacacacagtgtactttatgaatg
tagcttatgtgtcaagctaatttctagtatctgagtgccctttccggtca
ctagttaggaacagtatacagccaggaatgctggccaatgtctacaattc
accagctacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122760696_122761763
seq2: B6Ng01-010H11.g_64_1125 (reverse)

seq1  CCCGTAGCTGGTGGATTTGTAGACATGTGCCAGCATCCCTGGCTGTATAC  50
      |||||||||||| || ||||||||||  |||||||| |||||||||||||
seq2  CCCGTAGCTGGT-GAATTGTAGACATTGGCCAGCATTCCTGGCTGTATAC  49

seq1  TGGTTCCTAACTAGTGAACCGGAAAGGGCACTCAGATACTAGAAATTAGC  100
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  T-GTTCCTAACTAGTG-ACCGGAAAGGGCACTCAGATACTAGAAATTAGC  97

seq1  TTTGACACATAAGCTACATTCATAAAGTACACTGTGTGTTGAACACACTC  150
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -TTGACACATAAGCTACATTCATAAAGTACACTGTGTG-TGAACACACTC  145

seq1  ATCATTTTCTATTGAAATAGAAATTGTGTGTTACCCAGACACATGGCATA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCTA-TGAAATAGAAATTGTGTGTTACCCAGACACATGGCATA  194

seq1  GTGGAAAGAAATTGTTATGCCCAAATCGGGAGCTATATTCCTAGGAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAAATTGTTATGCCCAAATCGGGAGCTATATTCCTAGGAGCGG  244

seq1  TTCTATCCTGTGATGTTGACCGAGTCATGTAGTTCCCACTGGGCTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCTGTGATGTTGACCGAGTCATGTAGTTCCCACTGGGCTGTAGA  294

seq1  GTCATGTAGTTCCCACTGGGCTGGGAGTCATGTAGTTCCTTGTTTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTAGTTCCCACTGGGCTGGGAGTCATGTAGTTCCTTGTTTGGTTC  344

seq1  CGAAGAGGGTTGGCTGAGCCGGTGCTGTAGCATGGTTACAAGCCTTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGGGTTGGCTGAGCCGGTGCTGTAGCATGGTTACAAGCCTTGAAC  394

seq1  TGTGTGAGAGCTTCTGTGTCTGTGTTATGGAAACCGTGCACGATGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGAGCTTCTGTGTCTGTGTTATGGAAACCGTGCACGATGAGGTA  444

seq1  TACGTATTCCTGCTTCTATGTGTTGTTGTTTATTTTCAACAGTCTACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTCCTGCTTCTATGTGTTGTTGTTTATTTTCAACAGTCTACAGG  494

seq1  AGATGGATAAAATTAAATTCATCTTAGCTTCTTTATCTTTGGTTATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATAAAATTAAATTCATCTTAGCTTCTTTATCTTTGGTTATCCCA  544

seq1  AAGGTGCACCCAACCGTGGGGTCAGCGAGCAAATGTTTGAGCATGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCACCCAACCGTGGGGTCAGCGAGCAAATGTTTGAGCATGTGTAA  594

seq1  ACAATCAGCTTTCCCACTGTGAAACCAACTTGGCAAAAATCATAAGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGCTTTCCCACTGTGAAACCAACTTGGCAAAAATCATAAGCAGG  644

seq1  GTAAGGCAAAGAAAACAGGTTAAGCCCTGCCTGGAATGTGTGAGAGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCAAAGAAAACAGGTTAAGCCCTGCCTGGAATGTGTGAGAGATCC  694

seq1  CTGCCCCAAATGAATATTCTTCCTGATCTTTGCTTGCTTGCTTGCTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAAATGAATATTCTTCCTGATCTTTGCTTGCTTGCTTGCTTGCT  744

seq1  TGCTTGCTTGCTTTTGGTTTTTTTGAGACAGGGCTTCTCTGTTTAGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCTTTTGGTTTTTTTGAGACAGGGCTTCTCTGTTTAGCCCT  794

seq1  GGCTGTCCTGGAACTCACGCTGTAGACCAGGCTGTCCTCGAACTCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACGCTGTAGACCAGGCTGTCCTCGAACTCAGAAA  844

seq1  TCCACCTGCCTCCGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCCGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA  894

seq1  CTGCCCCACTGACATTGCTTTCTTATCCTCTCTTCTCTAGCAACATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACTGACATTGCTTTCTTATCCTCTCTTCTCTAGCAACATTTCA  944

seq1  TTGCCCAAAGATAAAAGAGTAAAGAACAATAATGTAACCAAGGCATCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAAGATAAAAGAGTAAAGAACAATAATGTAACCAAGGCATCCAT  994

seq1  ATACAAATCTCCTGCCTCAGAAATCCTATAGTGAAGGTGTTTCCTGACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATCTCCTGCCTCAGAAATCCTATAGTGAAGGTGTTTCCTGACCT  1044

seq1  GAACGAACCTGAGAATTC  1068
      ||||||||||||||||||
seq2  GAACGAACCTGAGAATTC  1062