BAC Information

Click to search

BAC

Clone NameB6Ng01-010L07
Chromosome3 (Build37)
Map Location 156,519,273 - 156,641,181
singlet/doubletdoublet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L07.bB6Ng01-010L07.g
ACCDH846296DH846297
length1,0981,145
definitionDH846296|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L07, 5' end.DH846297|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,640,082 - 156,641,181)(156,519,273 - 156,520,430)
sequence
gaattctataaaatcactatcaggaattataaaatcatgactttgtctac
acagcattactacatgatggtacatcttattggtctgcagaaaatatgcc
cattagggtggacggatgcctaggaatcattagactatgtaagaatgaca
aggaaatgcacatcagttgcaagaagcaacttgagatgaagtcttttagt
atcttcccttggagctcacccatcataggccatgcaaaactggtggcaga
aatggctcttcacacacacacacacacacacacacacacacacacacaca
gagagagagagagagagagagagagagagagagagaaccaatttctaaaa
gtcacattttaaaatcagtttttcttccaccaagagaacaccacagtcaa
cacagcgcatgctccagttcccctctctccaccttcctccaagttattca
cttaagagagagttcagtcctggtaggtgatgagtccccatccgaggacc
agtattctccctggaacactatgtcaagaatacaacacaaaaacacagta
aaaacattaatcactttattgctgggatggcaaggctgtgcgatgtttat
agaatgtgttcttgcctgtttgtttaggcaggctacttctccatgtgcat
tctcagcacaaagggcactcctaggtgcagatatcttgaaagattttcat
ttacattccggtgaggttttatttcttatttttctttcatggtaacaaat
acaatggacaaagattctgatctgattctgaatccgctccattgtaaccc
tagtgatgggttggaggaaatcatcaagcaggcagctcagatctgtctta
aaacctttcagaaagacacacacacacacacacacacacacacacacaca
cacacacctttcaagaaacatgacactgacaagaatcccagctccaggga
agtatgcaacacaccttgacctttcttagcaacatctggtcatactattg
ccatttattatgaaggaacaaaggcatttaagtccttcacttgaagaagg
catttcccccacgcaggatacctgcttagcttggggagggaggctgcc
gaattcctgtgacaaataacttttgccatctccctgaggcaggtgctccg
tgctggctgagaacagccacagaggaactgtcagctcggcaggccaagtc
agaaatacctcaatactcaggacatgttagagaccactgggaatcatggc
tttctttagagaaacaggaggtcttgacttgacctgatttaagtgttaga
gtttccctctgtcttgtctgcagatggaatctgggtgcaggtgttgtggg
cagaaagacacaatcagaatatttgttacttccttttctggacaattggg
gatgcgctatgtcatttgattgtaaatactatataaaccaggttttatgg
agattttaacctgttgatgccaggagtcgtaaaacaaaaggttttgctta
ataaatgtcagaagaataattatgtattatagtctctcaagtggctctca
ctttcatcacacggtacctggtcctgttccactctttagtgaatgtctaa
cacaccagccaactccatattctgcaaaggaaaatgttttcatggaggac
aacatggggaagaatgatcaggaaaaccaggaactattgttattctcaaa
gactccatatactaatgctaaatctaataacacacacacacataagcgtg
agtgtgaacttggcctatttaacacattttctgcagtcattgccttaacc
ttaaagctatatgtattcattgcctatatcatgcgactttagaaaccctc
atacctaagtctgaccaatccatttgtaaaattccatatacaggagtttt
agttgtcaatcatacttctgttacttgtgatcaagaagaaaggtgttgaa
atgcaaggaacatatttttgtcatatttttgtcagactctcattttgctg
aacatgtgttctgaagagtgttggtttggagccagtgacagctatggact
gttttctcccagcaaaggacacatgacagatagagatatttctctgtttg
cttgcaaaggtcagtctgtttcccatggtggctctggtataccagaacaa
cagatgagttagtctgatatgattgctacctctggggagtcctcttgatc
tcgaaagcaagcaagcttgttcagtctcttaagaaaagactgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156640082_156641181
seq2: B6Ng01-010L07.b_46_1143 (reverse)

seq1  GGCAGCCTCCCT-CCCAAGCTAAGCAGGTATTCCTGCGTGGGGAAAACTG  49
      |||||||||||| ||||||||||||||||| |||||||||||| ||| ||
seq2  GGCAGCCTCCCTCCCCAAGCTAAGCAGGTA-TCCTGCGTGGGGGAAA-TG  48

seq1  CCTTC-TCCAGTGAAGGACTTAAATTGCCTTTGTTCCTTCATTAATAAAT  98
      ||||| || ||||||||||||||| |||||||||||||||| ||||||||
seq2  CCTTCTTCAAGTGAAGGACTTAAA-TGCCTTTGTTCCTTCA-TAATAAAT  96

seq1  GGCAATAGTATGACCAGATGTTGCTAAGAAAGGTCAAAGGTGTGTTGCAT  148
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCAATAGTATGACCAGATGTTGCTAAGAAAGGTC-AAGGTGTGTTGCAT  145

seq1  ACTTCCCTGGAGCTGGGATTCTTGTCAGTGTCATGTTTC-TGGAAGGTGT  197
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  ACTTCCCTGGAGCTGGGATTCTTGTCAGTGTCATGTTTCTTGAAAGGTGT  195

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTCTGAAAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTCTGAAAGG  245

seq1  TTTTAAGACAGATCTGAGCTGCCTGCTTGATGATTTCCTCCAACCCATCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACAGATCTGAGCTGCCTGCTTGATGATTTCCTCCAACCCATCA  295

seq1  CTAGGGTTACAATGGAGCGGATTCAGAATCAGATCAGAATCTTTGTCCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTTACAATGGAGCGGATTCAGAATCAGATCAGAATCTTTGTCCAT  345

seq1  TGTATTTGTTACCATGAAAGAAAAATAAGAAATAAAACCTCACCGGAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTACCATGAAAGAAAAATAAGAAATAAAACCTCACCGGAATG  395

seq1  TAAATGAAAATCTTTCAAGATATCTGCACCTAGGAGTGCCCTTTGTGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAATCTTTCAAGATATCTGCACCTAGGAGTGCCCTTTGTGCTG  445

seq1  AGAATGCACATGGAGAAGTAGCCTGCCTAAACAAACAGGCAAGAACACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCACATGGAGAAGTAGCCTGCCTAAACAAACAGGCAAGAACACAT  495

seq1  TCTATAAACATCGCACAGCCTTGCCATCCCAGCAATAAAGTGATTAATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAACATCGCACAGCCTTGCCATCCCAGCAATAAAGTGATTAATGT  545

seq1  TTTTACTGTGTTTTTGTGTTGTATTCTTGACATAGTGTTCCAGGGAGAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTGTTTTTGTGTTGTATTCTTGACATAGTGTTCCAGGGAGAAT  595

seq1  ACTGGTCCTCGGATGGGGACTCATCACCTACCAGGACTGAACTCTCTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCTCGGATGGGGACTCATCACCTACCAGGACTGAACTCTCTCTT  645

seq1  AAGTGAATAACTTGGAGGAAGGTGGAGAGAGGGGAACTGGAGCATGCGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATAACTTGGAGGAAGGTGGAGAGAGGGGAACTGGAGCATGCGCT  695

seq1  GTGTTGACTGTGGTGTTCTCTTGGTGGAAGAAAAACTGATTTTAAAATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACTGTGGTGTTCTCTTGGTGGAAGAAAAACTGATTTTAAAATGT  745

seq1  GACTTTTAGAAATTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAGAAATTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  795

seq1  CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGAGCC  845

seq1  ATTTCTGCCACCAGTTTTGCATGGCCTATGATGGGTGAGCTCCAAGGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCACCAGTTTTGCATGGCCTATGATGGGTGAGCTCCAAGGGAA  895

seq1  GATACTAAAAGACTTCATCTCAAGTTGCTTCTTGCAACTGATGTGCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAAAGACTTCATCTCAAGTTGCTTCTTGCAACTGATGTGCATTT  945

seq1  CCTTGTCATTCTTACATAGTCTAATGATTCCTAGGCATCCGTCCACCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATTCTTACATAGTCTAATGATTCCTAGGCATCCGTCCACCCTA  995

seq1  ATGGGCATATTTTCTGCAGACCAATAAGATGTACCATCATGTAGTAATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATATTTTCTGCAGACCAATAAGATGTACCATCATGTAGTAATGC  1045

seq1  TGTGTAGACAAAGTCATGATTTTATAATTCCTGATAGTGATTTTATAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACAAAGTCATGATTTTATAATTCCTGATAGTGATTTTATAGAA  1095

seq1  TTC  1100
      |||
seq2  TTC  1098

seq1: chr3_156519273_156520430
seq2: B6Ng01-010L07.g_64_1208

seq1  GAATTCCTGTGACAAATAACTTTTGCCATCTCCCTGAGGCAGGTGCTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGACAAATAACTTTTGCCATCTCCCTGAGGCAGGTGCTCCG  50

seq1  TGCTGGCTGAGAACAGCCACAGAGGAACTGTCAGCTCGGCAGGCCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGAGAACAGCCACAGAGGAACTGTCAGCTCGGCAGGCCAAGTC  100

seq1  AGAAATACCTCAATACTCAGGACATGTTAGAGACCACTGGGAATCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACCTCAATACTCAGGACATGTTAGAGACCACTGGGAATCATGGC  150

seq1  TTTCTTTAGAGAAACAGGAGGTCTTGACTTGACCTGATTTAAGTGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGAGAAACAGGAGGTCTTGACTTGACCTGATTTAAGTGTTAGA  200

seq1  GTTTCCCTCTGTCTTGTCTGCAGATGGAATCTGGGTGCAGGTGTTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTCTGTCTTGTCTGCAGATGGAATCTGGGTGCAGGTGTTGTGGG  250

seq1  CAGAAAGACACAATCAGAATATTTGTTACTTCCTTTTCTGGACAATTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGACACAATCAGAATATTTGTTACTTCCTTTTCTGGACAATTGGG  300

seq1  GATGCGCTATGTCATTTGATTGTAAATACTATATAAACCAGGTTTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGCTATGTCATTTGATTGTAAATACTATATAAACCAGGTTTTATGG  350

seq1  AGATTTTAACCTGTTGATGCCAGGAGTCGTAAAACAAAAGGTTTTGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAACCTGTTGATGCCAGGAGTCGTAAAACAAAAGGTTTTGCTTA  400

seq1  ATAAATGTCAGAAGAATAATTATGTATTATAGTCTCTCAAGTGGCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCAGAAGAATAATTATGTATTATAGTCTCTCAAGTGGCTCTCA  450

seq1  CTTTCATCACACGGTACCTGGTCCTGTTCCACTCTTTAGTGAATGTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCACACGGTACCTGGTCCTGTTCCACTCTTTAGTGAATGTCTAA  500

seq1  CACACCAGCCAACTCCATATTCTGCAAAGGAAAATGTTTTCATGGAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCCAACTCCATATTCTGCAAAGGAAAATGTTTTCATGGAGGAC  550

seq1  AACATGGGGAAGAATGATCAGGAAAACCAGGAACTATTGTTATTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGGAAGAATGATCAGGAAAACCAGGAACTATTGTTATTCTCAAA  600

seq1  GACTCCATATACTAATGCTAAATCTAATAACACACACACACATAAGCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATATACTAATGCTAAATCTAATAACACACACACACATAAGCGTG  650

seq1  AGTGTGAACTTGGCCTATTTAACACATTTTCTGCAGTCATTGCCTTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAACTTGGCCTATTTAACACATTTTCTGCAGTCATTGCCTTAACC  700

seq1  TTAAAGCTATATGTATTCATTGCCTATATCATGCGACTTTAGAAACCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTATATGTATTCATTGCCTATATCATGCGACTTTAGAAACCCTC  750

seq1  ATACCTAAGTCTGACCAATCCATTTGTAAAATTCCATATACAGGAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAAGTCTGACCAATCCATTTGTAAAATTCCATATACAGGAGTTTT  800

seq1  AGTTGTCAATCATACTTCTGTTACTTGTGATCAAGAAGAAAGGTGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAATCATACTTCTGTTACTTGTGATCAAGAAGAAAGGTGTTGAA  850

seq1  ATGCAAGGAACATATTTTTGTCATATTTTTGTCAGACTCTCATTTTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGAACATATTTTTGTCATATTTTTGTCAGACTCTCATTTTGCTG  900

seq1  AACATGTGTTCTGAAGAGTGTTGGTTTGGAGCCAGTGACAGCTATGGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTTCTGAAGAGTGTTGGTTTGGAGCCAGTGACAGCTATGGACT  950

seq1  GTTGTTCTCCCAGCAAAGGACACATGACAGAATAGAGAATATTTCTCTGT  1000
      ||| |||||||||||||||||||||||||| |||||| ||||||||||| 
seq2  GTT-TTCTCCCAGCAAAGGACACATGACAG-ATAGAG-ATATTTCTCTG-  996

seq1  TTTGCTTGGCAAAGGTCAGTCTGTTTCCCCATGGTGGCCTCTGGTATACC  1050
      ||||||| |||||||||||||||||| |||||||||| ||||||||||||
seq2  TTTGCTT-GCAAAGGTCAGTCTGTTT-CCCATGGTGG-CTCTGGTATACC  1043

seq1  AGAACAACAGATGAAGTTTAGGTCTGGATATGATTGCTA-CTCTGGGGAG  1099
      ||||||||||||| ||||   |||| ||||||||||||| ||||||||||
seq2  AGAACAACAGATG-AGTT--AGTCT-GATATGATTGCTACCTCTGGGGAG  1089

seq1  TCCTCTTGATCTCAGAGGCAAGCAAAGCTTTGTCAGTCTCTAGAGAAAAG  1149
      |||||||||||||  | |||||| ||||||  |||||||||  |||||||
seq2  TCCTCTTGATCTCGAAAGCAAGC-AAGCTTGTTCAGTCTCTTAAGAAAAG  1138

seq1  GAGCTGCCC  1158
         ||||||
seq2  --ACTGCCC  1145