BAC Information

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BAC

Clone NameB6Ng01-011E15
Chromosome3 (Build37)
Map Location 19,118,278 - 19,292,227
singlet/doubletdoublet
Overlap geneMtfr1, Pde7a
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E15.bB6Ng01-011E15.g
ACCDH846713DH846714
length1,0931,068
definitionDH846713|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E15, 5' end.DH846714|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,118,278 - 19,119,361)(19,291,149 - 19,292,227)
sequence
gaattccaaagccagagtcagaggccacctcagagccagccctggtgagt
agtaagtagcatgttaggtggagatccatatctaagccattgacttgtgt
ctcctgctggatgctgctggactctgtaccaatatggagattgtagctag
ctgggcgggtaaggatcattgatcttttgtttgaaactgggacttaggaa
atccagcgtggacttaaactaggtgtgtagcagggttggcttaaatcctg
atcttgctacctctacctctgatgctgggattaaagtagttgtgccattg
tgaccagcaaggatgacatgtttgtttgtatttctacttttctcactgta
aaacttagtttgtttggaaatccaaaacttacagagaaacctaagtgaaa
aaaagcagagtttaaccctgggtttcactttccaatgttaaattttccct
gcagggttttatttttgtctttaggtataatgaagtgaaactcaatctaa
taataattttcattatgataaagtatagtgtttgtattcagattttaaaa
gatttactcaaaattagacaggatcattttctcctaggggtgcctggtga
gttttcccagtgagatctgacataggcttgtgaggtatatgctgcaccac
acagagactgagtagaccacacgaataggaactccttcctgcctgttgtt
tgcatgaagatacttgctgacttattccatgctttggatttttttttttt
ttcttttccagttttggcccacatatattgaagtctacagggaaaatgaa
ggcttttaattgaaaatgttctcgactcctaatggacaatgaattcagaa
agacttcctggttcaccagttggcttgcagagctgagttttgtctaagag
aaatcaccagtaattttagtaaattcctggctgtagtgttcattgggtct
ccttcctttctgagcccactagaggagtaagaagtcagtgaagcaccagg
atgtctggcttctgagaggtacttctggagctctcccttaacacactgta
cttggttgcatgttctgtttctttacactaaattctgtgcaca
gaattccacagttaaaacaaaagacacttctgtaagagacttttcctagg
gagacacaacatatacatctatttacctcagaaagggaacccacaactga
ccagagtaacgatcgcatcaaagaccaacttggtgagccaatgggtttga
ctggggtccctaacaggagtcggatgggggtcaccttcaggagtggagat
gtctcagcaagcagcttccactccaaaagccttgctctgacacaggtgat
gcctcccagaagctgcacccctggagctctcggtgcaacttggaggccgc
accaccggtctgtgggattgcttcgctggaactcagtaggtcaatctcct
ccccaagtgattgtttctgcttcaacaaacttggggagcgaaaatgctcc
ttactctgccaggcctgtaatatgttttacctcctgtgttccatgagcct
gtgggcctcctttctaaatgggatgtttccattcagagggaacttctgta
caataacattgaatatagaatagacaagcaaattatatggtgttcaaagg
atggaggaagagaaaagaatgtaaaagagaaaacttcttatatgttagaa
aggaaaatgagaaagaatcttcattcctgggtataagatggttgcatggc
tgaaaacaactaaaaatcatgataaaaagctaaaccatgtaagagcatta
atgaactgagaaaagtgttcttaggtccagatctcagcaaaggctggact
tcaagccatcatcaagctgggtttggcttcagtgttctttgctgaatctt
gtgagtctaatctaccgttttgaaagacttcttgggtgtgatgatttaag
agataaagcccaggttctaatcaaggtgacttcttaagtggcatctttcc
tctatgagctaaaacttcaaaatggcgatgtttctagagaagtatgaagt
atataattatcgcttctcactgtttctgatctgacacgacacagtgagtg
tagccctggagatcccgaaggaacagcatgctcatctgggcactgagcca
agttgatgggctgtttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19118278_19119361
seq2: B6Ng01-011E15.b_44_1136

seq1  GAATTCCAAAGCCAGAGTCAGAGGCCACCTCAGAGCCAGCCCTGGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCCAGAGTCAGAGGCCACCTCAGAGCCAGCCCTGGTGAGT  50

seq1  AGTAAGTAGCATGTTAGGTGGAGATCCATATCTAAGCCATTGACTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTAGCATGTTAGGTGGAGATCCATATCTAAGCCATTGACTTGTGT  100

seq1  CTCCTGCTGGATGCTGCTGGACTCTGTACCAATATGGAGATTGTAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGGATGCTGCTGGACTCTGTACCAATATGGAGATTGTAGCTAG  150

seq1  CTGGGCGGGTAAGGATCATTGATCTTTTGTTTGAAACTGGGACTTAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGGGTAAGGATCATTGATCTTTTGTTTGAAACTGGGACTTAGGAA  200

seq1  ATCCAGCGTGGACTTAAACTAGGTGTGTAGCAGGGTTGGCTTAAATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCGTGGACTTAAACTAGGTGTGTAGCAGGGTTGGCTTAAATCCTG  250

seq1  ATCTTGCTACCTCTACCTCTGATGCTGGGATTAAAGTAGTTGTGCCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTACCTCTACCTCTGATGCTGGGATTAAAGTAGTTGTGCCATTG  300

seq1  TGACCAGCAAGGATGACATGTTTGTTTGTATTTCTACTTTTCTCACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCAAGGATGACATGTTTGTTTGTATTTCTACTTTTCTCACTGTA  350

seq1  AAACTTAGTTTGTTTGGAAATCCAAAACTTACAGAGAAACCTAAGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTTTGTTTGGAAATCCAAAACTTACAGAGAAACCTAAGTGAAA  400

seq1  AAAAGCAGAGTTTAACCCTGGGTTTCACTTTCCAATGTTAAATTTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAGTTTAACCCTGGGTTTCACTTTCCAATGTTAAATTTTCCCT  450

seq1  GCAGGGTTTTATTTTTGTCTTTAGGTATAATGAAGTGAAACTCAATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTTTATTTTTGTCTTTAGGTATAATGAAGTGAAACTCAATCTAA  500

seq1  TAATAATTTTCATTATGATAAAGTATAGTGTTTGTATTCAGATTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTTCATTATGATAAAGTATAGTGTTTGTATTCAGATTTTAAAA  550

seq1  GATTTACTCAAAATTAGACAGGATCATTTTCTCCTAGGGGTGCCTGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTCAAAATTAGACAGGATCATTTTCTCCTAGGGGTGCCTGGTGA  600

seq1  GTTTTCCCAGTGAGATCTGACATAGGCTTGTGAGGTATATGCTGCACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCAGTGAGATCTGACATAGGCTTGTGAGGTATATGCTGCACCAC  650

seq1  ACAGAGACTGAGTAGACCACACGAATAGGAACTCCTTCCTGCCTGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTGAGTAGACCACACGAATAGGAACTCCTTCCTGCCTGTTGTT  700

seq1  TGCATGAAGATACTTGCTGACTTATTCCATGCTTTGGA-TTTTTTTTTTT  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCATGAAGATACTTGCTGACTTATTCCATGCTTTGGATTTTTTTTTTTT  750

seq1  TTCTTTTCCAG-TTTGGCCCACATATATTGAAGTCTACAGGGAAAATGAA  798
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCAGTTTTGGCCCACATATATTGAAGTCTACAGGGAAAATGAA  800

seq1  GGC-TTTAATTGAAAATGTTCCCGACTCCTAATGGACAATGAATTCAGAA  847
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTTTTAATTGAAAATGTTCTCGACTCCTAATGGACAATGAATTCAGAA  850

seq1  AGAC-TCCTGGTTCACCAGTTGGCTTGCAGAGCTGAG-TTTGTCTAGGAG  895
      |||| |||||||||||||||||||||||||||||||| |||||||| |||
seq2  AGACTTCCTGGTTCACCAGTTGGCTTGCAGAGCTGAGTTTTGTCTAAGAG  900

seq1  AAATCACCAGTA--TTTAGTAAATTCCTTGCTGTAGTGTTCATT-GGTCT  942
      ||||||||||||  |||||||||||||| ||||||||||||||| |||||
seq2  AAATCACCAGTAATTTTAGTAAATTCCTGGCTGTAGTGTTCATTGGGTCT  950

seq1  CCTTCC-TTCTGAGCCCAACTAGAGGAGTAAGAAG-CAGTGAAAGCAGCA  990
      |||||| |||||||||| ||||||||||||||||| ||||| ||||| ||
seq2  CCTTCCTTTCTGAGCCC-ACTAGAGGAGTAAGAAGTCAGTG-AAGCACCA  998

seq1  GGAGGTCTGGCTTCTGAGAGGTCAGCTCTGGAGCTCTCCC-TAACACACA  1039
      ||| |||||||||||||||||| |  |||||||||||||| |||||||| 
seq2  GGATGTCTGGCTTCTGAGAGGT-ACTTCTGGAGCTCTCCCTTAACACAC-  1046

seq1  TGTACTATG-TGCATGTTCTG-TTCTTAACACTAAAATCTGTGCACA  1084
      ||||||  | ||||||||||| ||||| |||||||| ||||||||||
seq2  TGTACTTGGTTGCATGTTCTGTTTCTTTACACTAAATTCTGTGCACA  1093

seq1: chr3_19291149_19292227
seq2: B6Ng01-011E15.g_64_1131 (reverse)

seq1  TAAACCAGCCCATCATACTTGGCTCAGTGCCCCCAGATGAGCATTGCTGT  50
      |||| |||||||||| |||||||||||||  |||||||||||| ||||||
seq2  TAAAACAGCCCATCA-ACTTGGCTCAGTG--CCCAGATGAGCA-TGCTGT  46

seq1  TTCCCTTCGGGATCT-CAGGGCTACACTCACTGTGTTCGTTGTCAAGATT  99
      |  |||||||||||| ||||||||||||||||||| ||| |||| ||| |
seq2  T--CCTTCGGGATCTCCAGGGCTACACTCACTGTG-TCG-TGTC-AGA-T  90

seq1  CAGAACCATGTGAGGAGGCGTTATTATATACTTCATACTTTCTCTAG-AA  148
      ||||| || ||||| ||   | |||||||||||||||| |||||||| ||
seq2  CAGAAACA-GTGAGAAGCGATAATTATATACTTCATAC-TTCTCTAGAAA  138

seq1  CATACGCCATTTTGAAGTTTTAGCTTCATAGAGGAAAGATGCCACTTAAG  198
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAT-CGCCATTTTGAAGTTTTAGC-TCATAGAGGAAAGATGCCACTTAAG  186

seq1  -AGTCACCTTGATTAGAACCTGGGCTTTATCTCTT-AATCATCACACCCA  246
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTCACCTTGATTAGAACCTGGGCTTTATCTCTTAAATCATCACACCCA  236

seq1  AGAAGTCTTTCAAAACGGTAGATTAGACTCACAAGATTCAGCAAAGAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTTTCAAAACGGTAGATTAGACTCACAAGATTCAGCAAAGAACA  286

seq1  CTGAAGCCAAACCCAGCTTTGATGATGGCTTGAAGTCCAGCCTTTGCTGA  346
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGAAGCCAAACCCAGC-TTGATGATGGCTTGAAGTCCAGCCTTTGCTGA  335

seq1  GATCTGGACCTAAGAACACTTTTCTCAGTTCATTAATGCTCTTACATGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGACCTAAGAACACTTTTCTCAGTTCATTAATGCTCTTACATGGT  385

seq1  TTAGCTTTTTATCATGATTTTTAGTTGTTTTCAGCCATGCAACCATCTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTTATCATGATTTTTAGTTGTTTTCAGCCATGCAACCATCTTA  435

seq1  TACCCAGGAATGAAGATTCTTTCTCATTTTCCTTTCTAACATATAAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGAATGAAGATTCTTTCTCATTTTCCTTTCTAACATATAAGAAG  485

seq1  TTTTCTCTTTTACATTCTTTTCTCTTCCTCCATCCTTTGAACACCATATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTTACATTCTTTTCTCTTCCTCCATCCTTTGAACACCATATA  535

seq1  ATTTGCTTGTCTATTCTATATTCAATGTTATTGTACAGAAGTTCCCTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGTCTATTCTATATTCAATGTTATTGTACAGAAGTTCCCTCTG  585

seq1  AATGGAAACATCCCATTTAGAAAGGAGGCCCACAGGCTCATGGAACACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACATCCCATTTAGAAAGGAGGCCCACAGGCTCATGGAACACAG  635

seq1  GAGGTAAAACATATTACAGGCCTGGCAGAGTAAGGAGCATTTTCGCTCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAAACATATTACAGGCCTGGCAGAGTAAGGAGCATTTTCGCTCCC  685

seq1  CAAGTTTGTTGAAGCAGAAACAATCACTTGGGGAGGAGATTGACCTACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGTTGAAGCAGAAACAATCACTTGGGGAGGAGATTGACCTACTG  735

seq1  AGTTCCAGCGAAGCAATCCCACAGACCGGTGGTGCGGCCTCCAAGTTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCGAAGCAATCCCACAGACCGGTGGTGCGGCCTCCAAGTTGCA  785

seq1  CCGAGAGCTCCAGGGGTGCAGCTTCTGGGAGGCATCACCTGTGTCAGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCTCCAGGGGTGCAGCTTCTGGGAGGCATCACCTGTGTCAGAGC  835

seq1  AAGGCTTTTGGAGTGGAAGCTGCTTGCTGAGACATCTCCACTCCTGAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTTGGAGTGGAAGCTGCTTGCTGAGACATCTCCACTCCTGAAGG  885

seq1  TGACCCCCATCCGACTCCTGTTAGGGACCCCAGTCAAACCCATTGGCTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCATCCGACTCCTGTTAGGGACCCCAGTCAAACCCATTGGCTCA  935

seq1  CCAAGTTGGTCTTTGATGCGATCGTTACTCTGGTCAGTTGTGGGTTCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGGTCTTTGATGCGATCGTTACTCTGGTCAGTTGTGGGTTCCCT  985

seq1  TTCTGAGGTAAATAGATGTATATGTTGTGTCTCCCTAGGAAAAGTCTCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGTAAATAGATGTATATGTTGTGTCTCCCTAGGAAAAGTCTCTT  1035

seq1  ACAGAAGTGTCTTTTGTTTTAACTGTGGAATTC  1079
      |||||||||||||||||||||||||||||||||
seq2  ACAGAAGTGTCTTTTGTTTTAACTGTGGAATTC  1068