BAC Information

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BAC

Clone NameB6Ng01-011G04
Chromosome3 (Build37)12 (Build37)
Map Location 98,409,490 - 98,409,64412,287,475 - 12,288,612
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433
Downstream geneHsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G04.bB6Ng01-011G04.g
ACCDH846785DH846786
length2761,144
definitionDH846785|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G04, 5' end.DH846786|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,409,490 - 98,409,644)(12,287,475 - 12,288,612)
sequence
aaggccagcttggtctatatagagaactctagaataatcagggctatgta
gagagatatctctcaaaaagaagtagatggtagcggcacatacatttaat
ccccatactcagagagcagacacaggtagatctctaagtgtaaggccagg
caggcctatatagtgagctttaaagcaactagagctatctaaaaggggct
ctcaaaaagcaaaacagaaaagaaaaaggaaggaaagaaggaagaacgca
aggaaggaaaagagagagagagagag
gaattctcagctccccatgcaacttcagagctgggtattgagtgtttcct
cactaacgtcagcacaagttaaaaacactcgatgtgcaaataaagcctgt
ggtttcctccttaatgctaaaacatacccacaccagtttttcttttcttt
tttatcctctggaggggagcccaccattttttatgtttgcatttttgttt
ctttgtttgtcttgtggacatctaataatcctggtgaacaaaagatgaga
tgatgtggtaggttgggaaatctggagatgctcaggataaaatcatctca
actaaaggtgctagaatgtccgtgccagcacatccggaagactgacattt
cattgtcttcaagctcatggcacaggtcacattggcctctccattgtcct
caaggtcatggcacaggtcacattggcctctccagttgtaagttagtcaa
gatcttagagacaaatagattgacagagtagccccacctcagagtatttg
ttagggtgtttctagagtatggatagcattagaaggctgagtatttgtct
acacaggttaactctccctgttatcatgtttcttctcctgtgagagttct
tggcataccatggttcctgagttacagtttgtgctacagtctctgtagac
tagcactgcctgacccaggccaataagagataatccagaggtctatgaca
aagagagatggggtctctgtgaatgactttttgtgcttcaaattagcctc
actataggaaactccaacaaaccattctgagaatgtgagagccaaaattg
gaataaagggaaatcctgttccaactaggatacccccaaatacatgttcc
acccaaatgtgaagattccaaactaacctatcatctcactgagtcttcct
ttaacaagaatagcaataggcaatgttgttccccatacttgctacaataa
aagaggaagcaagaatcataaacatgcagggacagctctcaagaaagggt
gctatcatggtcaaagcctctatgtgaattgcctctactttcaagacatt
gattcatcaagatgttggaactctgagtagagtttaatgcactgacattt
ctttggaatgtgatatgaaatccaactaggcctaaatacttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98409490_98409644
seq2: B6Ng01-011G04.b_272_329 (reverse)

seq1  CTCTCTCTCTCTCTCTTTT-CTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  49
      ||||||||||||||||||| ||| ||| | ||| ||| ||||||| ||| 
seq2  CTCTCTCTCTCTCTCTTTTCCTTCCTTGCGTTC-TTCCTTCTTTCCTTCC  49

seq1  TTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCGTTCCTT  99
      || |||||||                                        
seq2  TT-TTTCTTT----------------------------------------  58

seq1  CCTTCCTTCCTTCCTTCGTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCC  149
                                                        
seq2  --------------------------------------------------  58

seq1  TTCTTT  155
            
seq2  ------  58

seq1: chr12_12287475_12288612
seq2: B6Ng01-011G04.g_68_1211 (reverse)

seq1  CTCAAGTATTTAGCCCTATGTTAGAATTCATTATCATAT--CAAAG-AAT  47
      ||||||||||||| |||| ||| || |||| ||||| ||  ||||| |||
seq2  CTCAAGTATTTAGGCCTA-GTTGGATTTCA-TATCACATTCCAAAGAAAT  48

seq1  GTCAGTGCTATAAACTTAACTCAGGGTCCCAACATCTTGATG-ATCAATG  96
      ||||||||  ||||||  |||||| || |||||||||||||| |||||||
seq2  GTCAGTGCATTAAACTCTACTCAGAGTTCCAACATCTTGATGAATCAATG  98

seq1  TCTTTGACAGGTAGA-GCAA-TCACATAGTGCTTTTGACCATGGTAGCA-  143
      || |||| | ||||| |||| |||||||| |  |||||||||| ||||| 
seq2  TC-TTGA-AAGTAGAGGCAATTCACATAGAGGCTTTGACCATGATAGCAC  146

seq1  CCTTTCTTTGGGGCTGT-CCTGCATGTTTATGATTCTTGCTTCCTC-TTT  191
      ||||||||  | ||||| |||||||||||||||||||||||||||| |||
seq2  CCTTTCTTGAGAGCTGTCCCTGCATGTTTATGATTCTTGCTTCCTCTTTT  196

seq1  ATTGTAGC-AGTTTGGGG-ACAACATTGCCTATTGCTATTCTGTGTTGAA  239
      |||||||| ||| ||||| ||||||||||||||||||||||| |||| ||
seq2  ATTGTAGCAAGTATGGGGAACAACATTGCCTATTGCTATTCT-TGTTAAA  245

seq1  GGAGGACTCAGTGAGATGATAGGTTAGTTTGGAATCTTCACATTTTGGGT  289
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAAGACTCAGTGAGATGATAGGTTAGTTTGGAATCTTCACA-TTTGGGT  294

seq1  GGGAACATGTATTTGGGGGTATCCTAGTTGG-ACAGGATTTCCCTTAATT  338
       |||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  -GGAACATGTATTTGGGGGTATCCTAGTTGGAACAGGATTTCCCTTTATT  343

seq1  CCAATTTTGGCTCTCACATTCTCAGAATGGTTTGTTGGAGTTTCCTATAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTGGCTCTCACATTCTCAGAATGGTTTGTTGGAGTTTCCTATAG  393

seq1  TGAGGCTAATTTGAAGCAC-AAAAGTCATTCACAGAGACCCCATCTCTCT  437
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGGCTAATTTGAAGCACAAAAAGTCATTCACAGAGACCCCATCTCTCT  443

seq1  TTGTCATAGACCTCTGGATTATCTCTTATTGGCCTGGGTCAGGCAGTGCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGACCTCTGGATTATCTCTTATTGGCCTGGGTCAGGCAGTGCT  493

seq1  AGTCTACAGAGACTGTAGCACAAACTGTAACTCAGGAACCATGGTATGCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAGAGACTGTAGCACAAACTGTAACTCAGGAACCATGGTATGCC  543

seq1  AAGAACTCTCACAGGAGAAGAAACATGATAACAGGGAGAGTTAACCTGTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTCACAGGAGAAGAAACATGATAACAGGGAGAGTTAACCTGTG  593

seq1  TAGACAAATACTCAGCCTTCTAATGCTATCCATACTCTAGAAACACCCTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAATACTCAGCCTTCTAATGCTATCCATACTCTAGAAACACCCTA  643

seq1  ACAAATACTCTGAGGTGGGGCTACTCTGTCAATCTATTTGTCTCTAAGAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTCTGAGGTGGGGCTACTCTGTCAATCTATTTGTCTCTAAGAT  693

seq1  CTTGACTAACTTACAACTGGAGAGGCCAATGTGACCTGTGCCATGACCTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAACTTACAACTGGAGAGGCCAATGTGACCTGTGCCATGACCTT  743

seq1  GAGGACAATGGAGAGGCCAATGTGACCTGTGCCATGAGCTTGAAGACAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAATGGAGAGGCCAATGTGACCTGTGCCATGAGCTTGAAGACAAT  793

seq1  GAAATGTCAGTCTTCCGGATGTGCTGGCACGGACATTCTAGCACCTTTAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCAGTCTTCCGGATGTGCTGGCACGGACATTCTAGCACCTTTAG  843

seq1  TTGAGATGATTTTATCCTGAGCATCTCCAGATTTCCCAACCTACCACATC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGATTTTATCCTGAGCATCTCCAGATTTCCCAACCTACCACATC  893

seq1  ATCTCATCTTTTGTTCACCAGGATTATTAGATGTCCACAAGACAAACAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTTTTGTTCACCAGGATTATTAGATGTCCACAAGACAAACAAA  943

seq1  GAAACAAAAATGCAAACATAAAAAATGGTGGGCTCCCCTCCAGAGGATAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAATGCAAACATAAAAAATGGTGGGCTCCCCTCCAGAGGATAA  993

seq1  AAAAGAAAAGAAAAACTGGTGTGGGTATGTTTTAGCATTAAGGAGGAAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAACTGGTGTGGGTATGTTTTAGCATTAAGGAGGAAAC  1043

seq1  CACAGGCTTTATTTGCACATCGAGTGTTTTTAACTTGTGCTGACGTTAGT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTTATTTGCACATCGAGTGTTTTTAACTTGTGCTGACGTTAGT  1093

seq1  GAGGAAACACTCAATACCCAGCTCTGAAGTTGCATGGGGAGCTGAGAATT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACACTCAATACCCAGCTCTGAAGTTGCATGGGGAGCTGAGAATT  1143

seq1  C  1138
      |
seq2  C  1144