BAC Information

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BAC

Clone NameB6Ng01-011I16
Chromosome3 (Build37)
Map Location 41,059,187 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011I16.bB6Ng01-011I16.g
ACCDH846897DH846898
length931823
definitionDH846897|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I16, 5' end.DH846898|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctttgagcatcatcttttaatggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgaattaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgtcttgcagaagctttgcagtttca
tgaggtcccatttatcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatatgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
aatcttctacatgataacagccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttcgctcccttgtccaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacagttgc
tctgtagtaaagctttaagtcaggcatggtgattccaccagaggtacttt
tatccttgagaagagtttttgctatcctaggttttttgtcattccagatg
aatttgcagattgctctttctatttcattgaagaattgagttggaatttt
gatggggattgtattgaatctgtacattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacgtccttagttagagtcacg
gaattctagaaagtctttaatttctttattttttccccctgaaccagaga
tggttgagtcgagagttgtttactttacatgagtgaatagtctttctgtt
gcttctgttgttatagtccagctttaatacttggtgatctgataagatac
acagagctttttcaattttcgtgaaaatgtagaggcttgctttgtaacca
attatgtggtcaattatggaaaaggatctatgatgtgctgagaagaaggt
atactcttttgtgttttgggaaaatattctacagatgtctgttaggatca
tttgattcacaatgtctgttagtatcattacttctctgtttagtttttgt
ttgaatggcctatcagttggtaagaatggaatattgaagtctcttactct
taatatctggggttcaatgagcaatttaagctttagcaatttttctttta
caaatgtgaattcctttatgtttggggcataattgttcagaattaaaata
tcagtgtgtagattatcttttgattaattttgtttcaaagtctattttat
taaataaaagcatggatacttcaggttccttcttgggtcttttttttttt
ttggaaaaacattctagcctttttctctgaggtaatgtctatctctattg
cagtggtatgactcttactatgcaaatgaataataaatactgttttgcat
ccattttgtttgcctgtgttttgtaattgaagaattgagtccactggtgt
tgacaagtactagtgaccagtatttgttaattcctggagtttattgttag
tagtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-011I16.b_42_593 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| ||| |||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| ||||||||||| ||||||||||||||||| ||||||
seq2  GTCACTTGATCTTGGACAAGGGAGCGAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCATATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||||||||||||||| ||||||||||  |||||||||||||||||| |
seq2  AAAGTGGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      ||||||||||||||||||||||||||||| ||| || || ||||||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCGAGGATTGATAAATGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATGAAACTGCAAAGCTTCTGCAAGACAAAAGACACCGTCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| ||||||||||||||||||||||||||||||||| ||| |||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCTTAATTCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||||||||||||||||||||| |||||||||||| |||||| ||||
seq2  TAGGGGACTAATATCCAATATATATAAAGAACTCAAGAGGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||||||||||||| |||  ||||| ||||||||||||||
seq2  GAAAATCAAATAACCCCATTAAAAGATGATGCTCAAAGCTAAACAAAGAA  550

seq1  TT  551
      ||
seq2  TT  552