BAC Information

Click to search

BAC

Clone NameB6Ng01-011J10
Chromosome3 (Build37)
Map Location 52,812,090 - 52,812,943
singlet/doubletsinglet
Overlap geneCog6
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J10.bB6Ng01-011J10.g
ACCDH846929DH846930
length1,075857
definitionDH846929|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J10, 5' end.DH846930|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagtcatcctcctgcttcagctctcctgggtggtgagattaaa
ggcatgcacgcaccaccataccatactgtatcctgtttatctctgttctg
attaatttattcatccctcaaaaactacaggtttcgatgctattcttttt
ctacacatttaaagaataaagttacattattgtttgagtgattttatagc
ttagaatttgctttcaaaactgatttttttttgcattctataatttttgg
tgtattgtattgtatgtttgttttcattcatctcaaagtaactttaaatt
gtcttttttgatcaactggtaaaatttttcttgtttagtttctatatgtt
tacattttttttcttgtgagtccttctgccatttattagttgattattcc
actttggtcaatatagaattatagctatataattctaataatttcaatct
tattaagatttgtttgtgactattctgtttaatgttctatatataaagga
gaaaaatatgtattatgctatggtttgatggaatattctttatttctgcc
agattattttctatgatctacatcaagtctatgctaatccctcatttgtc
ttgatgtttgagtcgttgactaagtggtgctgaaatctcttcctattgga
atccctgattgtttttcctcaaagatgttaatatttgcttcaggcatgcc
tgctatatatccttcatgagtcaaccccttttacagtatataatagtctt
gtttcttgtatcagcttttcctttcaaactgattttgtctaatacttctg
tgtaactactcaattgtcattctcttgattaacataaagatataatattt
tcgcaaacttcactcagtttttatatttaggtctaaagtgagtgttcctg
tcaacagctcatagttctaactttaaaagaaactccactttgctggtgat
acctttaagacattcacatagtgcaatacttatatatattatttgttggt
tctttcctatatttttaaaaacacatataaacatttttggctcttaactc
cctccatactttcctcttcctgatg
gaattcttaaaatttcacgtggcctttatttgatttcttacaaggtgttt
gtatgtgtgcagagagtatgcatgtgggtgtgtgtgccacagaggccagg
tggggtgtgggacccccaggaggtgggcacaggtggccgtgagcctcctc
cggacacgggtgctggaagctgagcagcatgctctcttagctgccgagcc
gcctctccattgtctctgatgctttttacacagctgagcaaactttgcat
gttcacatacagtgtttgtgtgtttatcaggaacattgctcgggaggggg
ataaatgaagacggtgtctctgctctaaaggaaaacagcaaagatgacac
ttctgtcctgaataaatcaatgagggcagcacttgctgtttatgtggctg
taatgttacgaatggtgaactgtggtaaattaccacgcactgagacgcag
tgatgagggtgtcatattggcagtctcgtcagaagtcaggcgtggttctc
accgtgctaacattacagtgtggaaaagccctattcaggtagtttctctc
cttcctcagtctgtgtgttgaactggttggctgcttgcatttgcaagaat
gaagtcttgagttttccttgctggctgtcattagtgttctcactacttgc
ttagtcatgtgatccatcttcattgttgtcttcttccatcctcacagccc
acatggctggtcagttccctcccgtcttccatgtcctgtttcctacttct
ggcttgttaatggcattctcttctgtgttagggccgatgcttactctgga
ctttcttagggcagttttgggaacgttgctctaataacaaggtctttact
ttcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52812090_52812943
seq2: B6Ng01-011J10.g_66_921 (reverse)

seq1  CCTGAAAGTAAAAGACCTTGCTATTAGAGC-ACGTTCCC-AAACTG-CCT  47
      ||||||||| |||||||||| ||||||||| |||||||| |||||| |||
seq2  CCTGAAAGT-AAAGACCTTGTTATTAGAGCAACGTTCCCAAAACTGCCCT  49

seq1  AAGTAAGTTCAGGGTAAGCATCGGCCCTAACACAGAAGAGGATGCCATTA  97
      ||| |||| ||| ||||||||||||||||||||||||||| |||||||||
seq2  AAGAAAGTCCAGAGTAAGCATCGGCCCTAACACAGAAGAGAATGCCATTA  99

seq1  ACAAGCCAGAAGTAGGAAACAGGACATGGAAGACGGGAGGGAACTGACCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGAAGTAGGAAACAGGACATGGAAGACGGGAGGGAACTGACCA  149

seq1  GCCATGTGGGCTGTGAGGATGGAAGAAGACAACAATGAAGATGGATCACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGGCTGTGAGGATGGAAGAAGACAACAATGAAGATGGATCACA  199

seq1  TGACTAAGCAAGTAGTGAGAACACTAATGACAGCCAGCAAGGAAAACTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGCAAGTAGTGAGAACACTAATGACAGCCAGCAAGGAAAACTCA  249

seq1  AGACTTCATTCTTGCAAATGCAAGCAGCCAACCAGTTCAACACACAGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCATTCTTGCAAATGCAAGCAGCCAACCAGTTCAACACACAGACT  299

seq1  GAGGAAGGAGAGAAACTACCTGAATAGGGCTTTTCCACACTGTAATGTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGAGAAACTACCTGAATAGGGCTTTTCCACACTGTAATGTTA  349

seq1  GCACGGTGAGAACCACGCCTGACTTCTGACGAGACTGCCAATATGACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTGAGAACCACGCCTGACTTCTGACGAGACTGCCAATATGACACC  399

seq1  CTCATCACTGCGTCTCAGTGCGTGGTAATTTACCACAGTTCACCATTCGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACTGCGTCTCAGTGCGTGGTAATTTACCACAGTTCACCATTCGT  449

seq1  AACATTACAGCCACATAAACAGCAAGTGCTGCCCTCATTGATTTATTCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACAGCCACATAAACAGCAAGTGCTGCCCTCATTGATTTATTCAG  499

seq1  GACAGAAGTGTCATCTTTGCTGTTTTCCTTTAGAGCAGAGACACCGTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGTGTCATCTTTGCTGTTTTCCTTTAGAGCAGAGACACCGTCTT  549

seq1  CATTTATCCCCCTCCCGAGCAATGTTCCTGATAAACACACAAACACTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCCCCCTCCCGAGCAATGTTCCTGATAAACACACAAACACTGTA  599

seq1  TGTGAACATGCAAAGTTTGCTCAGCTGTGTAAAAAGCATCAGAGACAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATGCAAAGTTTGCTCAGCTGTGTAAAAAGCATCAGAGACAATG  649

seq1  GAGAGGCGGCTCGGCAGCTAAGAGAGCATGCTGCTCAGCTTCCAGCACCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCGGCTCGGCAGCTAAGAGAGCATGCTGCTCAGCTTCCAGCACCC  699

seq1  GTGTCCGGAGGAGGCTCACGGCCACCTGTGCCCACCTCCTGGGGGTCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCGGAGGAGGCTCACGGCCACCTGTGCCCACCTCCTGGGGGTCCCA  749

seq1  CACCCCACCTGGCCTCTGTGGCACACACACCCACATGCATACTCTCTGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCTGGCCTCTGTGGCACACACACCCACATGCATACTCTCTGCA  799

seq1  CACATACAAACACCTTGTAAGAAATCAAATAAAGGCCACGTGAAATTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAAACACCTTGTAAGAAATCAAATAAAGGCCACGTGAAATTTTA  849

seq1  AGAATTC  854
      |||||||
seq2  AGAATTC  856