BAC Information

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BAC

Clone NameB6Ng01-012D13
Chromosome3 (Build37)
Map Location 28,759,595 - 28,760,774
singlet/doubletsinglet
Overlap genenone
Upstream geneE030011K20Rik, Pld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1
Downstream geneGm1527, 6130401L20Rik, LOC100040676
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D13.bB6Ng01-012D13.g
ACCDH847372DH847373
length1,1591,144
definitionDH847372|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D13, 5' end.DH847373|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatggtccaatttctgaaaagaagtcttagaagagaaaaata
aacttcgatctcagctttgaacttatactatggaaaccaggttccagagt
ttgacaaaatagtcatgtatatattctcatgaaggggaatttaataacgg
ttctttaaaaagctctacaagaaaactaagaatgggaagagcttcactat
gacatctgaagacaatagaacactgattgatgtgaataaaagtgacggtg
gctatgaaagtagatatgactagtgatgcaactacctgcaactacctata
catagtttagggaatctgtttaactatatatatatatatatatatatatt
tttttttttctagacagggtttctctgtatagccctggctgtcctggaac
tcactttgtagaccaggctggcctcgaacccagaaatctgcctgcctctg
cctcttgagtgctggattaaaggcatgtgtcaccatgccagatatcaatt
ttcttaggatgcagtgcaactttgaaagcatcatcttgtgagaattccga
ctggatcatcttagatcatgtcttagagacatctcagagattaataatgg
tatagagtacaaggaagaaaaacatatagacctagagaatgcctaaccca
ttacaacagggacactacgcaatttaaatttggttttttaaaagagccat
ataaattacactataccaggtaatgatctcatgtcctccttagatgcaaa
gaaaagaccttgtaagaaagaaagaccttgtataaaatcatgtttccaca
ggggctatgttccccatgaggacagagtatacaaagtcctgagagttaaa
aacagaggaaaactctttggaaaagaggtgagttccatttgacatgatgg
ccaatgccgcacagcaattctggtaggtctcaaatgattcatttctggct
ttcttaaggatatctgatataaaaaaatagtgtcacctgatctttcaggt
tacatatggtgggatgtgtactagaaagatgagacacaaaccagtgaagg
tctcttgtcatgccagcccttgcactgtacttgtgcatacaatggtctgg
gtctcgcagcaatatgctcatgctgcatgggatgtggacagtccttctgc
ttcctctga
gaattctcacctgaggaataccaaatgtctgggaagcacctgaaaaggtg
ttcaacatccttaatcatcagggaaatgcaaatcaaaataaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgcttgctaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatcataatactggaagatccagcaatacctctcctgggc
atatacccagaagatgttccaacttgtaataaggacacatgctacactat
gttcatagcaaccttatttataatagccagaagctggaaacaacccagat
atctctcaacagaggaatggatacagaaaatgtggtacatttacaccatg
gagtagtactcaggtattaaaaacaatgaatttatttcatgctaggcaaa
tggatgtatctggaggatatcattcttaatgtggtaacccaatcacaaaa
gaagtcatttgatatgcattcactgataagcggatattagcccagaaact
tagactatccaagatacaatttgaaaaacacataaaactcaagaagaagg
aagtgtggatagttcgctccttcttagaatggggaacgaaatatccatgg
aaggagttacagagccaaaggtcagagttgagacagaagtaaggaccatc
cagagactgtcccacctggggatccatctcatatacaaccaccaaaccca
gacaccattgccaataaaattttgctgacaggaccctgatattgctttct
cttgtgaggctatgccagtccctggcaaatacggaagtggatgctcacag
tcatctattgagtggaacacaggccctaatgaagagctagagaaagtaac
caagcagctaaaggggtctgcaaccatataggaggaacaacatatgacta
ccagtaccactcagagctgtgtctcttgttgcatttgtagtggtggaggc
cttatggcacatgggagggagccctggtcttggaatatctaagccaatac
aggaaagcaaggcagaagtgagagtgtgtgtgtagggagcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28759595_28760774
seq2: B6Ng01-012D13.b_47_1205

seq1  GAATTCATTATGGTCCAATTTCTGAAAAGAAGTCTTAGAAGAGAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGGTCCAATTTCTGAAAAGAAGTCTTAGAAGAGAAAAATA  50

seq1  AACTTCGATCTCAGCTTTGAACTTATACTATGGAAACCAGGTTCCAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGATCTCAGCTTTGAACTTATACTATGGAAACCAGGTTCCAGAGT  100

seq1  TTGACAAAATAGTCATGTATATATTCTCATGAAGGGGAATTTAATAACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAATAGTCATGTATATATTCTCATGAAGGGGAATTTAATAACGG  150

seq1  TTCTTTAAAAAGCTCTACAAGAAAACTAAGAATGGGAAGAGCTTCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAAGCTCTACAAGAAAACTAAGAATGGGAAGAGCTTCACTAT  200

seq1  GACATCTGAAGACAATAGAACACTGATTGATGTGAATAAAAGTGACGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGAAGACAATAGAACACTGATTGATGTGAATAAAAGTGACGGTG  250

seq1  GCTATGAAAGTAGATATGACTAGTGATGCAACTACCTGCAACTACCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAAAGTAGATATGACTAGTGATGCAACTACCTGCAACTACCTATA  300

seq1  CATAGTTTAGGGAATCTGTTTAACTATATATATATATATATATATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATAGTTTAGGGAATCTGTTTAACTATATATATATATATATATATATATT  350

seq1  TTTTTTTTTCTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAC  400

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACCCAGAAATCTGCCTGCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCCTCGAACCCAGAAATCTGCCTGCCTCTG  450

seq1  CCTCTTGAGTGCTGGATTAAAGGCATGTGTCACCATGCCAGATATCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGTGCTGGATTAAAGGCATGTGTCACCATGCCAGATATCAATT  500

seq1  TTCTTAGGATGCAGTGCAACTTTGAAAGCATCATCTTGTGAGAATTCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGATGCAGTGCAACTTTGAAAGCATCATCTTGTGAGAATTCCGA  550

seq1  CTGGATCATCTTAGATCATGTCTTAGAGACATCTCAGAGATTAATAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCATCTTAGATCATGTCTTAGAGACATCTCAGAGATTAATAATGG  600

seq1  TATAGAGTACAAGGAAGAAAAACATATAGACCTAGAGAATGCCTAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTACAAGGAAGAAAAACATATAGACCTAGAGAATGCCTAACCCA  650

seq1  TTACAACAGGGACACTACGCAATTTAAATTTGGTTTTTTAAAAGAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAGGGACACTACGCAATTTAAATTTGGTTTTTTAAAAGAGCCAT  700

seq1  ATAAATTACACTATACCAGGTAATGATCTCATGTCCTCCTTAGATGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTACACTATACCAGGTAATGATCTCATGTCCTCCTTAGATGCAAA  750

seq1  GAAAAGACCTTGTAAGAAAGAAAGACCTTGTATAAAATCATGTTTCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACCTTGTAAGAAAGAAAGACCTTGTATAAAATCATGTTTCCACA  800

seq1  GGGGCTATGTTCCCCATGAGGACAGAGTATACAAAGTCCTGAGAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATGTTCCCCATGAGGACAGAGTATACAAAGTCCTGAGAGTTAAA  850

seq1  AACAGAGGAAAACTCTTTGGAAAAGAGGTGAGTTCCATTTGACATGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAAAACTCTTTGGAAAAGAGGTGAGTTCCATTTGACATGATGG  900

seq1  CCAATGCCGCACAGCAATTCTGGTAGGTCTCAAATGATTCATTTCTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCGCACAGCAATTCTGGTAGGTCTCAAATGATTCATTTCTGGCT  950

seq1  TTCTTAAGGATAATCTGATATAAAAAAATAAGTGTCACCTGATCTTTCAG  1000
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTCTTAAGGAT-ATCTGATATAAAAAAAT-AGTGTCACCTGATCTTTCAG  998

seq1  GGTTAACATTATGGTGGGATGTGTACTAGAAAAGATTGAGACACAAAACC  1050
      |  | ||| |||||||||||||||||||| ||||| |||||||| |||||
seq2  G--TTACA-TATGGTGGGATGTGTACTAG-AAAGA-TGAGACAC-AAACC  1042

seq1  AGTTGAAGGTCCTCCTTGTCCATGCCAGCCCTTGCACTGTACCTGTGCAT  1100
      || ||||||||   ||||| |||||||||||||||||||||| |||||||
seq2  AG-TGAAGGTC--TCTTGT-CATGCCAGCCCTTGCACTGTACTTGTGCAT  1088

seq1  ACCATTGGTCTGGTTCTCGCAAGCAAATAGTGCTTCATGCTGCATGGTAT  1150
      | || |||||||| |||||| ||| |||| ||| ||||||||||||| ||
seq2  A-CAATGGTCTGGGTCTCGC-AGC-AATA-TGC-TCATGCTGCATGGGAT  1133

seq1  GT-GACAGGTTCTTTCCCTGTCTTCCTCTGA  1180
      || |||||  || ||  ||| ||||||||||
seq2  GTGGACAG--TCCTT--CTG-CTTCCTCTGA  1159