BAC Information

Click to search

BAC

Clone NameB6Ng01-012I08
Chromosome3 (Build37)
Map Location 41,059,047 - 41,059,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I08.bB6Ng01-012I08.g
ACCDH847591DH847592
length1,0051,216
definitionDH847591|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I08, 5' end.DH847592|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttatatattggatattagtccaatatttgatttaggataggta
aagatcctttcccaatctgttggtggcctttttgtcttattgacagtgtc
ttttgccttacagaagctttgcaattttatgaggtcccatttgtcgattc
tcaatgttacagcacaaaccattgctcttctattcaggaatttttcccct
gtgcccaaatcttcgaggctttcccccactttttcctctataagtttcac
tgtctctggttttatatggagttccttgacctacttagatttgaccttag
tacaaggagataagaatgtattaatttgcattcttctacatgataaccac
cagttgtgccagcaccatttgttgaaaatgctgtctttttttccactgga
tggtttaagctcccttgtcaaagatcaagtgaccataggtctgtgggttc
atttctgtgtcttcaattctattccattggtctacttttctgtcactata
ccagtaccatgcagtttttatcacaattgctctgtagtacatctttagtt
cgggcatggcgattccaccagaggttcttttatccttgagaagagttttt
cctatcctaggttttttgttattccagatgaatttgcagattgccctttc
taatttgttgaagaattgagttggaattttgatggggattgcattgaatc
tgtagattgcttttggcaagatagccatttttactaattattgatcctgc
caatccatgagtatgggagatctttccatcttctgagatcttctttattt
ctttcatcagagacttgaagttcttgtcatacagatctttcacttccttg
ttagagtcaaaccaatgcattttatattagttgtgactattgtgaagtgt
attgtttccctaatttctttctcaggggtttatcctttgtgtagagaaag
gccactgatttgtttgaattaattttatatcagctacttcattgaagctg
tttat
gaattcttcgtttagctctgagtccaattttttaatggggttatttgatt
ttctggagtccaccttcttgagttcttctttatatattggataatagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttatcttattaccagtgtcttttgccttacagaagcttgcaatttta
tgaggacccatttgtcaattctcgatcttaaagcacaagccattgctgtt
ctattcaggaatgttttcctgagcccatatctttgtggcatttcgccact
ttctcctctttaagtttcagtgtctctggttttatattaagtccctcaat
ccacttagatttgaccttagtaaaaggagataggaatggatcaattcgca
ttcttctgcatgataacagccagttgtgccagcaccatttgttgaaaatg
ctgtcttttctccactggatggttttagctcccttgtcaaagatcaagtg
accataggtttgtgggttcatttgtgggtcttcaattctattccattggt
ctacttgtctgtcgctataccagtaccatgcagtttttatctcaattgct
ctgtagtacagctttaggtcaggcatggtgattctaccagaggttctttt
atctttgagacgaatttttgctatcctaggtttttggttattccagatta
atttgcagattgctctttccaatacattgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcctgccaatccatgaccatgggagatctttcatcttct
gagatcttctttaatttctttcttcagagacttgaagttcttatcataca
gatctttcacttccttagttagagtcacgcccagatattttatattattt
gtgactatggggagggtgttgtttccctaatttctttctcaagggtttaa
tcctttgtgtagagtaaggccatgaactggttggatttaaatttatatcc
agctactacatgaagctgttatcctgctaggaagttctctggcggaattt
taggcaccttaaataactatcatcaatcagcaagagatggaatttgaact
ctcgttcgattgatgcctgatcgccttgggccaaatcgcctcagcacgga
acactcacagaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059047_41059666
seq2: B6Ng01-012I08.b_46_665 (reverse)

seq1  AATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAAC  50
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  AATAACAAAAAACCTAGGATAGGAAAAACTCTTCTCAAGGATAAAAGAAC  50

seq1  CTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTG  100
      ||||||||||||| ||||||| || |||||| | ||||||||||||||||
seq2  CTCTGGTGGAATCGCCATGCCCGAACTAAAGATGTACTACAGAGCAATTG  100

seq1  TGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGG  150
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TGATAAAAACTGCATGGTACTGGTATAGTGACAGAAAAGTAGACCAATGG  150

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  200
      ||||||||||||||| |||||| ||| ||||| |||||||||||||||||
seq2  AATAGAATTGAAGACACAGAAATGAACCCACAGACCTATGGTCACTTGAT  200

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGG-AAAAAAGACAGCATTTTC  249
      ||| |||||||||||| |||||||||||||| ||||||||||||||||||
seq2  CTTTGACAAGGGAGCTTAAACCATCCAGTGGAAAAAAAGACAGCATTTTC  250

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  299
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  AACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGCAAAT  300

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  349
      | || || || |||||||||||||||||||||||||||||| | ||||||
seq2  TAATACATTCTTATCTCCTTGTACTAAGGTCAAATCTAAGTAGGTCAAGG  350

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  399
      ||| ||| ||||||||||||||| |||||||||||||||| |||||||||
seq2  AACTCCATATAAAACCAGAGACAGTGAAACTTATAGAGGAAAAAGTGGGG  400

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  449
       ||||||| |||||| ||| ||||||||||||||||||| |||||| |||
seq2  GAAAGCCTCGAAGATTTGGGCACAGGGGAAAAATTCCTGAATAGAAGAGC  450

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  499
      ||||| ||||||||||| ||||||||| ||||||||||||||||| ||| 
seq2  AATGGTTTGTGCTGTAACATTGAGAATCGACAAATGGGACCTCATAAAAT  500

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  548
      ||||||||||||| |||||||||||||| |||||||||||||||||| ||
seq2  TGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCA  550

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  598
      ||||||||||||||||||||||||||||||||||||||| |||  |||||
seq2  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAAATATTGGACT  600

seq1  AATATCCAATATATATCAAGAA  620
      |||||||||||||||  |||||
seq2  AATATCCAATATATA--AAGAA  620