BAC Information

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BAC

Clone NameB6Ng01-012J23
Chromosome3 (Build37)
Map Location 81,185,840 - 81,186,887
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J23.bB6Ng01-012J23.g
ACCDH847667DH847668
length1,2711,052
definitionDH847667|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J23, 5' end.DH847668|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagatctgtaccccatttttaataggattatttggttc
tatccagcctaacttcttaagttctttgtatattttggatattagccctc
tatcagatttaggattggtaaagatctctttccaatctgtgggttgctat
tttgtcctattgacagtgtcctttgccttacagaagttttgcaattttat
gagatcccatttgtcagttcttgatcttagagcataaggcgttgagttct
gcttaggaaattttccctgtgccaatgtgttcaaggttctttccaatttt
tttcttctattagattcactgtatctggttttatgtggaggtccttgatc
cattttcacttgatctttgtacaaggagataagaatttgcattcttctac
atgctgaccaccagttgaaacagcaccatttgttgaaaatgctgtctttg
ttccactgggtgattttggctcccagggactaaaccaccaaccaaagagg
acacatgaagagaactatggctccagctggatatgtagcagaggattgcc
acatcgggcatcactgggagggaagtcccttgatcctgtggaggcttgat
aacccaggattagggaatgctagggccctgaggcaagaatgggtgagagg
gtctgggagcaccttcatggaggcagggaaggggatgggcatttgtggag
gggaaaatgggaagggggataacatttgaaatgtcaataaataaaataac
caattattttctaatagaaaggagcaaggaaagggtgtgcaaagagcaca
gcataattagcataatttagctcctttgtagttaacatttcagaaactct
cccaccctaccccatgcttctcctacttctctgatatgtgaatcctaagg
agtaatttttataagagagtattttctttcttctagtcaaatatcttatg
atgcattaatgatgcctatatttcatcagtacaagcataaaaggaagtta
caaattttgcactttttattaatttggaattgcaaatatacatttaagcc
ataacgaatttggatacaaagccattttttaggtaaagcccactaaaaga
tgaaatgttaagaacctggccaaattctgggtccagtaatttctatttac
tcgggtagggaaaatttggcaagtccccaatacaccatattctcccggcg
cggtttgacctgaaatatcacgtaaaacgcgtcatattatggatacatca
cctctgaaagtgtgatactag
gaattctcttggattgggattttgacccatttcaatgggatatccagaaa
tgaattctgtctctgaattcacagagaaacctaaggctttgaaagaatgg
aacatggtgtcatatactttcatttctttagagagcatttatcttgtcta
tacactaatttgaatgtttattcaatggataatagaagacaaatactgta
taacaaatgtaattttaataaatgttcagggctggggattgagctagaca
agaatgattccattgtgtgatttcttgaccatgactttaacaaatacatt
cattaacctctcattcccacatcctgctgccattcacttaatggaggaga
gaaagtttgataagtgaggggaaaggcagagaatgtcaaaggcttacaag
gaattaaattacagttttagaaaaggacatactcaatttggaattattta
aaggttacaaactcaacatattaaaacttgctcctccccctacagactct
taagaagcacagaaaatatttacatgactataaaattaagtgtaaattaa
ggaggataattgagaaaattgaatcttttaaaatttatgtttttaaaaat
aaaacttccataacataaagaggctttgcatcattaattattctggctct
gcttcctatggtagaataaaaaaaaaatattctcctaaacaatggagaag
gactgtatgtatttattagtaaagtgataaaaattatcaggaaatacaca
aaacagcaaagacataatgttgaatttaataaaactattgctttgagaga
aagtatttctaaactatatgtgtgataaaaatgggatgctcatagtcagt
tattggatgaatcacagggcccccaatggaggagctagagaaagtaccaa
gggagctaaaggggtctgcaaccctataggtgggaacaacaatatgaact
aaccagtattcgaaggagaggtccatggtcttgcaaactttatatgcctt
cagtacaggggaatgccagggcccagaagttaggagtggggtgggtaagg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81185840_81186887
seq2: B6Ng01-012J23.g_69_1120

seq1  GAATTCTCTTGGATTGGGATTTTGACCCATTTCAATGGGATATCCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGATTGGGATTTTGACCCATTTCAATGGGATATCCAGAAA  50

seq1  TGAATTCTGTCTCTGAATTCACAGAGAAACCTAAGGCTTTGAAAGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTGTCTCTGAATTCACAGAGAAACCTAAGGCTTTGAAAGAATGG  100

seq1  AACATGGTGTCATATACTTTCATTTCTTTAGAGAGCATTTATCTTGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTGTCATATACTTTCATTTCTTTAGAGAGCATTTATCTTGTCTA  150

seq1  TACACTAATTTGAATGTTTATTCAATGGATAATAGAAGACAAATACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAATTTGAATGTTTATTCAATGGATAATAGAAGACAAATACTGTA  200

seq1  TAACAAATGTAATTTTAATAAATGTTCAGGGCTGGGGATTGAGCTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGTAATTTTAATAAATGTTCAGGGCTGGGGATTGAGCTAGACA  250

seq1  AGAATGATTCCATTGTGTGATTTCTTGACCATGACTTTAACAAATACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATTCCATTGTGTGATTTCTTGACCATGACTTTAACAAATACATT  300

seq1  CATTAACCTCTCATTCCCACATCCTGCTGCCATTCACTTAATGGAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTCTCATTCCCACATCCTGCTGCCATTCACTTAATGGAGGAGA  350

seq1  GAAAGTTTGATAAGTGAGGGGAAAGGCAGAGAATGTCAAAGGCTTACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTGATAAGTGAGGGGAAAGGCAGAGAATGTCAAAGGCTTACAAG  400

seq1  GAATTAAATTACAGTTTTAGAAAAGGACATACTCAATTTGGAATTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATTACAGTTTTAGAAAAGGACATACTCAATTTGGAATTATTTA  450

seq1  AAGGTTACAAACTCAACATATTAAAACTTGCTCCTCCCCCTACAGACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTACAAACTCAACATATTAAAACTTGCTCCTCCCCCTACAGACTCT  500

seq1  TAAGAAGCACAGAAAATATTTACATGACTATAAAATTAAGTGTAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCACAGAAAATATTTACATGACTATAAAATTAAGTGTAAATTAA  550

seq1  GGAGGATAATTGAGAAAATTGAATCTTTTAAAATTTATGTTTTTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATAATTGAGAAAATTGAATCTTTTAAAATTTATGTTTTTAAAAAT  600

seq1  AAAACTTCCATAACATAAAGAGGCTTTGCATCATTAATTATTCTGGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCCATAACATAAAGAGGCTTTGCATCATTAATTATTCTGGCTCT  650

seq1  GCTTCCTATGGTAGAATAAAAAAAAAATATTCTCCTAAACAATGGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATGGTAGAATAAAAAAAAAATATTCTCCTAAACAATGGAGAAG  700

seq1  GACTGTATGTATTTATTAGTAAAGTGATAAAAATTATCAGGAAATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATGTATTTATTAGTAAAGTGATAAAAATTATCAGGAAATACACA  750

seq1  AAACAGCAAAGACATAATGTTGAATTTAATAAAACTATTGCTTTGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAAGACATAATGTTGAATTTAATAAAACTATTGCTTTGAGAGA  800

seq1  AAGTATTTCTAAACTATATGTGTGATAAAA--TGGATGCTCATAGTCAGT  848
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  AAGTATTTCTAAACTATATGTGTGATAAAAATGGGATGCTCATAGTCAGT  850

seq1  TATTGGATGAATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCAA  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTGGATGAATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACC-A  899

seq1  AGGGAGCTAAAGGGGTCTGCAACCCTATAGGT-GGAACAACAATATGAAC  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGGAACAACAATATGAAC  949

seq1  TAACCAGTATTCGAAAGAGAGGTCCATTGGTCTTGCAAACTTTATATGCC  997
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TAACCAGTATTCGAAGGAGAGGTCCA-TGGTCTTGCAAACTTTATATGCC  998

seq1  -TCAGTACAGGGGAATGCCAGGGCCAAGAAG-TAGGAGT-GGGTGGGTAG  1044
       |||||||||||||||||||||||| ||||| ||||||| ||||||||| 
seq2  TTCAGTACAGGGGAATGCCAGGGCCCAGAAGTTAGGAGTGGGGTGGGTAA  1048

seq1  GGGA  1048
      ||||
seq2  GGGA  1052