BAC Information

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BAC

Clone NameB6Ng01-012N19
Chromosome3 (Build37)9 (Build37)
Map Location 41,059,224 - 41,059,73710,276,642 - 10,277,692
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012N19.bB6Ng01-012N19.g
ACCDH847830DH847831
length9561,049
definitionDH847830|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N19, 5' end.DH847831|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(10,276,642 - 10,277,692)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatctatattagatattagtccc
ctatctgaaataggttaaggtaaagatgctttcccaatctgttggtggcc
tttttgtcttattgatggtcttttgtcttaccgaagctttgcaattttat
gaggtcccatttgtcaattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatctttgagacttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttgat
ccacttagatttgagcttagtacaaggagataggaatggatcaatttgca
ttcttctacatgataactgccagttgtgccaacaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattgtt
ctacttgtctgttgctacaccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttatgtcaggcatggtgattccaccagaggttttttt
tatccttgagaagagtttttgctaccctaggttttttgttattccagatg
aatttgcaaattgccctttctaattcattgaagaattgagttggaatttt
tgagggggattccatggaaactgtagattgcatttggcaagatatgcatt
tttactatagtgatcctgccaatccatgagcttgggagatctttccatct
tctgagatcttcttaaatttctttcttcagagacttgaagttcttatcat
acagatctttcacttccttagttagagtcacgcctaggtatttatatttt
tgtgac
gaattcctttcttgaaaaaaaaatcgcattgagcaatttcctgaaaaatc
gtgccatactttaacttttttccctttttattttgaaatatattttcaaa
actttaaagatgtaaaatagattcttttcataccatatactctgattata
ttttctaatccctgagctccacccagctcctcctcatcttccctcccaca
caaatccacattctttctttctctcattagaaaacaaatcagcatctaaa
tattagtgagggaataattgaaaataaaaacaaacaagatggaataggat
gaaacaaacagacagaagcaaaggagccaaataaaaagcacaagaaacat
ataaacacagacacaaaagatgcattgaatactgaatggtattttaggaa
tatgtgtatggttattccaagacaattaaagaactcattttctacagttt
ttaaaaatgatgtgaagggtgtattttaatgaagtaattattatttgtgg
tcttctttggtgaatttcacatatcagaaaattaaacatgaaaatatatc
agatttttttcatcctttaatttctttacaactgagatgtatgaaataca
tttccttgttgcattcccaagctgggaggatgacctcaatgaagcaagga
tgaagtttcttgccattgagaggcagcctatctgtccaggactcagttct
gttcctgccactgacaagtagattggtcatgagtctcttactgtatcaat
gattgagtttcttcatgaaaaattatcattcattttagatttttcatagt
tgatttgagttgtaattgatttcatatttgtaagtgttcaatgataccag
agacacagtaagtgctatatacatagctataaagtctatttgctctacca
aacaaacagagaacaaaatcatgacattttttcaggaaaattcacatact
gagtatgataaatgtcagatcgtgcaataataatagcccatcaatcttat
atatgaaatgcatacactcatggaaatcatgctgtgctccatgaacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-012N19.b_47_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||  ||
seq2  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGTTGGCACAACTGGCAGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      ||||||||||||||||||||||||||| ||  ||||||||| ||||||||
seq2  ACTTATAGAGGAGAAAGTGGGGAAAAGTCTCAAAGATATGGGCACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATT  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||||||||| ||| ||||||||||| | ||| ||||||  ||
seq2  GACAAATGGGACCTCATAAAATTGCAAAGCTTCGGTAAGACAAAAG--AC  348

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC-  398
      | ||||||||||||||||| ||||||||||||||||||| ||||||||| 
seq2  CATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGCATCTTTACCT  398

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      || ||||  |||||||||||||||||||| |||||| || ||||||||||
seq2  TAACCTATTTCAGATAGGGGACTAATATCTAATATAGATAAAGAACTCAA  448

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498

seq1  AGCTAAACAAAGAATT  514
      ||||||||||||||||
seq2  AGCTAAACAAAGAATT  514

seq1: chr9_10276642_10277692
seq2: B6Ng01-012N19.g_66_1114

seq1  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50

seq1  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100

seq1  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150

seq1  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200

seq1  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250

seq1  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300

seq1  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350

seq1  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400

seq1  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450

seq1  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500

seq1  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550

seq1  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600

seq1  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650

seq1  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700

seq1  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTCTTACTGTATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTCTTACTGTATCAAT  750

seq1  GATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAGT  800

seq1  TGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCAG  850

seq1  AGACACAGTAAGTGCTATATACATAGCTATAAAGTCTA-TTGCTCTACCA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGACACAGTAAGTGCTATATACATAGCTATAAAGTCTATTTGCTCTACCA  900

seq1  AACAAAACAGAGAACAAAATCATGACA-TTTTTCAGGAAAAATTCACATA  948
      ||| ||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AAC-AAACAGAGAACAAAATCATGACATTTTTTCAGG-AAAATTCACATA  948

seq1  CTGAGTATGATAAATGTCAGATCGTGCAAATAAT-ATAGCCCATCATTCT  997
      ||||||||||||||||||||||||||| |||||| ||||||||||| |||
seq2  CTGAGTATGATAAATGTCAGATCGTGC-AATAATAATAGCCCATCAATCT  997

seq1  TATTATAATGAAATGCATACACTCATGG-AATCATGCTGTGCCTCAATGA  1046
      || ||| ||||||||||||||||||||| |||||||||||| ||| ||||
seq2  TA-TAT-ATGAAATGCATACACTCATGGAAATCATGCTGTG-CTCCATGA  1044

seq1  ACAGG  1051
      |||||
seq2  ACAGG  1049