BAC Information

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BAC

Clone NameB6Ng01-012P05
Chromosome3 (Build37)
Map Location 148,548,749 - 148,708,734
singlet/doubletdoublet
Overlap geneLphn2, LOC100040368
Upstream geneLOC100040354
Downstream geneLOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012P05.bB6Ng01-012P05.g
ACCDH847895DH847896
length1,172369
definitionDH847895|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P05, 5' end.DH847896|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,548,749 - 148,549,934)(148,708,360 - 148,708,734)
sequence
gaattcaaccttttgaagatgaactacaaagaatcctttaaagacaacca
cacagtttaaatattactcattggaaattttgaaatatttctaagataaa
atcctaaatgctcaaggcatattggacttaggtgctttttggactaggat
atttaaccaggaaaactggggcaaatatttcaaaatctgatatctgagat
acttcttgtacttcagattctaagtaagggacacagagaagacgctactg
ccagtgacctacacagcctctgttcactctgcatgaccaggtacatagca
agtagaggaacaataatctcactctagccctttggaatgaaaacctggtt
agctcattcttaccaaatgaggtggtgaggacagaaatgaaagtctgaca
tgcactgctacaccgcactgagatacccatgtccctcaccagacacagga
agggggctttgtaactcaatggagaatttgtagtattgctacttgagctt
tccaaaaagaaaatccctgttttaaagaaatataaatgtctctcttcagt
acattattcaatgcctcggcttttgaggacctagacatagaaaaattcac
taaactacttgaggttttgtgtgttcagagtcaaacggtgatatgtgcac
agtaattattcattgacaacccagctgcaaaaccacttcctccctggttt
tcctctggttctttccaactacgccagtcaaatatgacaggcttcctcac
gctttacatcgtgatataccatgaatagggtatttacatgcttccactat
gaaaatgtttttcaaataatttcaatcttgcctttcctcttttcaatacg
gtgtttatgttcaaattgtcagagtgctgattaaataattataaaccaac
gagccacaagtatactactatttaaaaatgggtttcagctgctatattta
gaatgatttcctttttatgccaatgcccatatatacttcatttgagatct
gatatggccacagcatgtattcccagaatgcatgtttttttttttcaaat
actgtagcaactagacatggaagcccttctgcattcgactcaagggccag
ctttgttgcttttacatctagactgagttcactgttgacactagctggac
ctggtactaaactgctgtgcac
cttgctcagtgtcagcccacctctgagggagagaaatgaagccatttttc
tctaaccctcctgcttactggattcctgccattcatttctcttcttcaaa
ttctgctggataaagctacaggctctgcttgttatctgtgactgtacaga
tcgggctgtcctggaactcggtatgtaggcaggcttgccgcaaagacaac
atctgtacccatgaatccaggtgcttgaactggaggcctggaacaacaca
ccagcctccctcagacccagatgtttctgccttgttatctatgtctgctt
gctacctgcttctttcctgtgattagctctgctgaacagtgctcgtgtgt
gtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148548749_148549934
seq2: B6Ng01-012P05.b_45_1216

seq1  GAATTCAACCTTTTGAAGATGAACTACAAAGAATCCTTTAAAGACAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTTTGAAGATGAACTACAAAGAATCCTTTAAAGACAACCA  50

seq1  CACAGTTTAAATATTACTCATTGGAAATTTTGAAATATTTCTAAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTAAATATTACTCATTGGAAATTTTGAAATATTTCTAAGATAAA  100

seq1  ATCCTAAATGCTCAAGGCATATTGGACTTAGGTGCTTTTTGGACTAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAATGCTCAAGGCATATTGGACTTAGGTGCTTTTTGGACTAGGAT  150

seq1  ATTTAACCAGGAAAACTGGGGCAAATATTTCAAAATCTGATATCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCAGGAAAACTGGGGCAAATATTTCAAAATCTGATATCTGAGAT  200

seq1  ACTTCTTGTACTTCAGATTCTAAGTAAGGGACACAGAGAAGACGCTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTACTTCAGATTCTAAGTAAGGGACACAGAGAAGACGCTACTG  250

seq1  CCAGTGACCTACACAGCCTCTGTTCACTCTGCATGACCAGGTACATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACCTACACAGCCTCTGTTCACTCTGCATGACCAGGTACATAGCA  300

seq1  AGTAGAGGAACAATAATCTCACTCTAGCCCTTTGGAATGAAAACCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGAACAATAATCTCACTCTAGCCCTTTGGAATGAAAACCTGGTT  350

seq1  AGCTCATTCTTACCAAATGAGGTGGTGAGGACAGAAATGAAAGTCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCTTACCAAATGAGGTGGTGAGGACAGAAATGAAAGTCTGACA  400

seq1  TGCACTGCTACACCGCACTGAGATACCCATGTCCCTCACCAGACACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTACACCGCACTGAGATACCCATGTCCCTCACCAGACACAGGA  450

seq1  AGGGGGCTTTGTAACTCAATGGAGAATTTGTAGTATTGCTACTTGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTTTGTAACTCAATGGAGAATTTGTAGTATTGCTACTTGAGCTT  500

seq1  TCCAAAAAGAAAATCCCTGTTTTAAAGAAATATAAATGTCTCTCTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAGAAAATCCCTGTTTTAAAGAAATATAAATGTCTCTCTTCAGT  550

seq1  ACATTATTCAATGCCTCGGCTTTTGAGGACCTAGACATAGAAAAATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTCAATGCCTCGGCTTTTGAGGACCTAGACATAGAAAAATTCAC  600

seq1  TAAACTACTTGAGGTTTTGTGTGTTCAGAGTCAAACGGTGATATGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACTTGAGGTTTTGTGTGTTCAGAGTCAAACGGTGATATGTGCAC  650

seq1  AGTAATTATTCATTGACAACCCAGCTGCAAAACCACTTCCTCCCTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTATTCATTGACAACCCAGCTGCAAAACCACTTCCTCCCTGGTTT  700

seq1  TCCTCTGGTTCTTTCCAACTACGCCAGTCAAATATGACAGGCTTCCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTTCTTTCCAACTACGCCAGTCAAATATGACAGGCTTCCTCAC  750

seq1  GCTTTACATCGTGATATACCATGAATAGGGTATTTACATGCTTCCACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACATCGTGATATACCATGAATAGGGTATTTACATGCTTCCACTAT  800

seq1  GAAAATGTTTTTCAAATAATTTCAATCTTGCCTTTCCTCTTTTCAATACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTTTCAAATAATTTCAATCTTGCCTTTCCTCTTTTCAATACG  850

seq1  GTGTTTATGTTCAAATTGTCAGAGTGCTGATTAAATAATTATAAACCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATGTTCAAATTGTCAGAGTGCTGATTAAATAATTATAAACCAAC  900

seq1  GAGCCACAAGTATACTACTATTTAAAAATGGGTTTCAGCTGCTATATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAAGTATACTACTATTTAAAAATGGGTTTCAGCTGCTATATTTA  950

seq1  GAATGATTTCCTTATTTATGCCAATGCCCCATATATACTTCATTTGAAGA  1000
      ||||||||||||| |||||||||||| ||||||||||||||||||| |||
seq2  GAATGATTTCCTT-TTTATGCCAATG-CCCATATATACTTCATTTG-AGA  997

seq1  TCTGATAATGGGCCAACAGCATGTATTCCCAGAATGCAATGTTTTTTTTT  1050
      |||||| ||||  | |||||||||||||||||||||||   |||||||||
seq2  TCTGAT-ATGG--CCACAGCATGTATTCCCAGAATGCATGTTTTTTTTTT  1044

seq1  TCAAATACTGTAGCAACTAGACATGG-AGCCCTTCTGCATTCCGACTCAA  1099
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TCAAATACTGTAGCAACTAGACATGGAAGCCCTTCTGCATT-CGACTCAA  1093

seq1  GGGCAGGCTGTGTGCTTTTTACATCTAGACTGGAGTTCACCTGTAGGACA  1149
      ||||  ||| |||   ||||||||||||||| ||||||| ||||  ||||
seq2  GGGCCAGCTTTGTTGCTTTTACATCTAGACT-GAGTTCA-CTGT-TGACA  1140

seq1  CCAAGTTTGACACTTGTACTAAACACCTGCTGTGCAC  1186
       | || | ||| || ||||||||   |||||||||||
seq2  -CTAGCTGGAC-CTGGTACTAAA---CTGCTGTGCAC  1172

seq1: chr3_148708360_148708734
seq2: B6Ng01-012P05.g_66_440 (reverse)

seq1  CACACACACACACACACACACACACGAGCACTGTTCAGCAGAGCTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACGAGCACTGTTCAGCAGAGCTAATCA  50

seq1  CAGGAAAGAAGCAGGTAGCAAGCAGACATAGATAACAAGGCAGAAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAAGCAGGTAGCAAGCAGACATAGATAACAAGGCAGAAACATC  100

seq1  TGGGTCTGAGGGAGGCTGGTGTGTTGTTCCAGGCCTCCAGTTCAAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGAGGGAGGCTGGTGTGTTGTTCCAGGCCTCCAGTTCAAGCACC  150

seq1  TGGATTCATGGGTACAGATGTTGTCTTTGCGGCAAGCCTGCCTACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCATGGGTACAGATGTTGTCTTTGCGGCAAGCCTGCCTACATACC  200

seq1  GAGTTCCAGGACAGCCCGATCTGTACAGTCACAGATAACAAGCAGAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCCGATCTGTACAGTCACAGATAACAAGCAGAGCCT  250

seq1  GTAGCTTTATCCAGCAGAATTTGAAGAAGAGAAATGAATGGCAGGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTATCCAGCAGAATTTGAAGAAGAGAAATGAATGGCAGGAATCC  300

seq1  AGTAAGCAGGAGGGTTAGAGAAAAATGGCTTCATTTCTCTCCCTCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCAGGAGGGTTAGAGAAAAATGGCTTCATTTCTCTCCCTCAGAGG  350

seq1  TGGGCTGACACTGAGCAAGGAATTC  375
      |||||||||||||||||||||||||
seq2  TGGGCTGACACTGAGCAAGGAATTC  375