BAC Information

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BAC

Clone NameB6Ng01-013A04
Chromosome12 (Build37)3 (Build37)
Map Location 73,788,536 - 73,789,37659,864,576 - 59,865,165
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7
Downstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A04.bB6Ng01-013A04.g
ACCDH847939DH847940
length1,143850
definitionDH847939|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A04, 5' end.DH847940|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,788,536 - 73,789,376)(59,864,576 - 59,865,165)
sequence
gaattccttataaccccatggaacaaagaataggtgaacgtgttcatctc
acttttaaaaattggctttaaaaaaaaacaaaaacaacaacaacaacaac
aaaaaacaggggcagttatatccccaaaggtcatcaaaggcacttcttgc
ttttgctttatttgtcctaaattttttgcaaactgatgttaaaggtcagt
ctgcaggggatcaccactggcatccagttacttctagttcttatgccatg
gtaaagtggcaggactcatttactaatgaatggaagggtccagatctggt
cctaatctggggaaggggctcggtctgtgttttttcacaaaaagaagatg
gatctcgatggctgcctgggagattagtttgtcaactggacacagatcct
gaatcttctagtaagtatgactctaaccttgattatggctaaaaatcctc
tttagccaaaaagttaaattaaagcacagtctccactccaagggaagctg
taagcctttctgcaattctcaaagtcatctcccccacacccggagctcta
agtctagcctgatctttgctaatttgcaattgaatggagtacctggactt
ccccaaaagaagcttttgtactgtgcctttcactgtcttgttttcaagca
ggtcagtcaatgcccttcagcctgactgcaggggtgtgcatctccgcccc
caacagcaagcaggtggcagttattaattttcatcaagaattctaagtac
atattgtggctttggtctgatttgggaataaggtgtgctatgagggccgg
ttagccaatgacgggcaaccaaatcccagatcataccaatctaagacagg
ggtacatgccaaaaggcagtggtcattgatattacaccacagagccatgt
ttgtgtgaattataacacaaactcgctgcatgtaacttccgataatggaa
ttggacggttcgagagatttgagatcctagacaggcatgtcgcagccacc
ataattccagcagactagagcataaataaatttatgcctcatcagctttt
tatttatattaataacaggaagaagatgtagcctcccataagtctgaaac
ataactaaggccagaactgacttgcttccactaagaaagatta
gaattcacagaccttttgaagcccaagaagaaggaagaccacaatgtgga
tgtttcagtgtttcttagaagggtgaaaaaaatactcacaggaggaaata
tggagacaaagtatggagcagagactggaggaaaggccaaccagagactg
ccccacctgggcatccatcctacatacagccaccaaacccagtcgctatt
gtggatgccgggaagtgcttgctaacagaagcctgataaagctgtctcct
gcgaagctttgccagagcctgacaaatacaaaggcagatgctcacagaca
accattggactaagtgtgggtttcccgatggaagagttggagaagagact
gaaggagctgagggggtttgcagccctacggatggagcaacagtgtcaac
cagccaaaacccctaaagctcctggggtctggaccaccaaccaaagaata
cacatggagggaccatggctccggcctcatatgtggcagaggatggcctt
gttggacattagtggaaggagaggctcttgggctggagggtgttcgatgc
cccagtgtagggaaatacaaggaaaagggaagacaggagtgagtgggtag
gtggagcagcaccctcatggaggcagggcgagggaggataggatgggggc
ttccgaaggggaaacctggaaagggaaaatcatttgaaatgtaaataaag
aaaatatccaataaaaaattttctggcagaagatttgggaaacagcaaca
tgaaagaatctggtgcaagacttatttctaagtacagccagttgcataag
ctgtgacatgacaatcacaaaaggtaggggtagggaaagatggaagaatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73788536_73789376
seq2: B6Ng01-013A04.b_361_1189

seq1  GGAGCTCGGTCTGTGTTTTTTCACAAAAAGAAGATGGAGCATGATGGCTG  50
      || ||||||||||||||||||||||||||||||||||| |  ||||||||
seq2  GGGGCTCGGTCTGTGTTTTTTCACAAAAAGAAGATGGATCTCGATGGCTG  50

seq1  CCTGAGAGATTAGTTTGTCAACTGGACAAAGATCCTGAATCTTTTAGTAA  100
      |||| ||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CCTGGGAGATTAGTTTGTCAACTGGACACAGATCCTGAATCTTCTAGTAA  100

seq1  GTATGACT-----CTTGATTATGGCTAAAAATCCTCTTTAGCCAAAAAGT  145
      ||||||||     |||||||||||||||||||||||||||||||||||||
seq2  GTATGACTCTAACCTTGATTATGGCTAAAAATCCTCTTTAGCCAAAAAGT  150

seq1  TAAATTACAGCTCTGCCTCCACTCCCAGGGAAGCTGTAAGCCTTTCTGCA  195
      ||||||| ||| | | ||||||||| ||||||||||||||||||||||||
seq2  TAAATTAAAGCACAGTCTCCACTCCAAGGGAAGCTGTAAGCCTTTCTGCA  200

seq1  ATTCTCAAAGTCACCTCCCCCACACCAGGAGTTCTAAGTCTAGCCTGATC  245
      ||||||||||||| |||||||||||| |||| ||||||||||||||||||
seq2  ATTCTCAAAGTCATCTCCCCCACACCCGGAGCTCTAAGTCTAGCCTGATC  250

seq1  GTTGCTAATTTGCAATTGAATGGAGTACCTGGACTTCCCCAAAAGAAGCT  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATTTGCAATTGAATGGAGTACCTGGACTTCCCCAAAAGAAGCT  300

seq1  TTTGTACTGTGCCTTTCACTGTCTCAACTTTGTTTTCAAGCAGGTCAGTC  345
      |||||||||||||||||||||||      |||||||||||||||||||||
seq2  TTTGTACTGTGCCTTTCACTGTC------TTGTTTTCAAGCAGGTCAGTC  344

seq1  AATGCCCTTCAGCCTGACTGCAGCAGGGCGTGCATCCCCACCCCCAACAG  395
      |||||||||||||||||||||||  ||| ||||||| || ||||||||||
seq2  AATGCCCTTCAGCCTGACTGCAG--GGGTGTGCATCTCCGCCCCCAACAG  392

seq1  CAGGCAGGTGGCCGTTATTAA--TTCATCAAGAATTCTAAGTATATATTG  443
      || ||||||||| ||||||||  |||||||||||||||||||| ||||||
seq2  CAAGCAGGTGGCAGTTATTAATTTTCATCAAGAATTCTAAGTACATATTG  442

seq1  TGGCTTTGGTCTGATTTGGAAATAAGGTGTGCTATGATGGTCGGCTAGCC  493
      ||||||||||||||||||| ||||||||||||||||| || ||| |||||
seq2  TGGCTTTGGTCTGATTTGGGAATAAGGTGTGCTATGAGGGCCGGTTAGCC  492

seq1  AATGAAGGGCAACCAAATCCCGGATCATACCAATCTAAGACAGGGGTACA  543
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATGACGGGCAACCAAATCCCAGATCATACCAATCTAAGACAGGGGTACA  542

seq1  TGCCAAAAGGCAGTGGTCGTTGATATTACACCACAGAGCCATGTTTGTGT  593
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCCAAAAGGCAGTGGTCATTGATATTACACCACAGAGCCATGTTTGTGT  592

seq1  GAATTATAACACAAATTCACTGCATGTAACTTCCGATGACAGAATTGGAT  643
      ||||||||||||||| || |||||||||||||||||| |  |||||||| 
seq2  GAATTATAACACAAACTCGCTGCATGTAACTTCCGATAATGGAATTGGAC  642

seq1  GGTTCGAGAGGATTTGAGATCCTAAGACAGGCACGGCCGCCAGCCACCAT  693
      ||||||||| ||||||||||||| ||||||||| | |   ||||||||||
seq2  GGTTCGAGA-GATTTGAGATCCT-AGACAGGCATGTC--GCAGCCACCAT  688

seq1  AATTCCCAGGTAGGACTATGGAGCATAAATAAATTTTATGCCTCAGTCCA  743
      |||| ||||    |||||  ||||||||||||| |||||||||||   ||
seq2  AATT-CCAG--CAGACTA--GAGCATAAATAAA-TTTATGCCTCA--TCA  730

seq1  GCTTTTTATTAATATTAATAACAGGGAGGAGATGTAGCCTCCCATAAGCC  793
      |||||||||| |||||||||||||| || ||||||||||||||||||| |
seq2  GCTTTTTATTTATATTAATAACAGGAAGAAGATGTAGCCTCCCATAAGTC  780

seq1  TGAAACA-GGCTAA-GCCAGAACCTGACCTTGCTGCCACTAAG-AAGATT  840
      |||||||   |||| ||||||| |||| |||||| |||||||| ||||||
seq2  TGAAACATAACTAAGGCCAGAA-CTGA-CTTGCTTCCACTAAGAAAGATT  828

seq1  A  841
      |
seq2  A  829

seq1: chr3_59864576_59865165
seq2: B6Ng01-013A04.g_330_914

seq1  AGCCTGACAAATACAAAGGCAGATGCTCACAGACAACCATTGGACTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACAAATACAAAGGCAGATGCTCACAGACAACCATTGGACTAAGT  50

seq1  GTGGGTTTCCCGATGGAAGAGTTGGAGAAGAGACTGAAGGAGCTGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTCCCGATGGAAGAGTTGGAGAAGAGACTGAAGGAGCTGAGGGG  100

seq1  GTTTGCAGCCCTACGGATGGAGCAACAGTGTCAACCAGCCAAAACCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCCCTACGGATGGAGCAACAGTGTCAACCAGCCAAAACCCCTA  150

seq1  AAGCTCCTGGGGTCTGGACCACCAACCAAAGAATACACATGGAGGGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTGGGGTCTGGACCACCAACCAAAGAATACACATGGAGGGACCA  200

seq1  TGGCTCCGGCCTCATATGTGGCAGAGGATGGCCTTGTTGGACATTAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGGCCTCATATGTGGCAGAGGATGGCCTTGTTGGACATTAGTGG  250

seq1  AAGGAGAGGCTCTTGGGCTGGAGGGTGTTCGATGCCCCAGTGTAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGCTCTTGGGCTGGAGGGTGTTCGATGCCCCAGTGTAGGGAAA  300

seq1  TACAAGGAAAAGGGAAGACAGGAGTGAGTGGGTAGGTGGAGCAGCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAAAAGGGAAGACAGGAGTGAGTGGGTAGGTGGAGCAGCACCCT  350

seq1  CATGGAGGCAGGGCGAGGGAGGATAGGATGGGGGCTTCCGAAGGGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGCAGGGCGAGGGAGGATAGGATGGGGGCTTCCGAAGGGGAAAC  400

seq1  CTGGAAAGGGAAAATCATTTGAAATGTAAATAAAGAAAATATCCAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGGAAAATCATTTGAAATGTAAATAAAGAAAATATCCAATAAA  450

seq1  AAATTTTCTGGCAGAAGATTTGGGAAAACAGCAACATGAAAGAATCTTGG  500
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AAATTTTCTGGCAGAAGATTTGGG-AAACAGCAACATGAAAGAATC-TGG  498

seq1  TGCAAGACTTATTTCTAAGTACAAGCCAGTTGCAATAAAGCTGTGACAAG  550
      |||||||||||||||||||||| |||||||||||   ||||||||||| |
seq2  TGCAAGACTTATTTCTAAGTAC-AGCCAGTTGCA--TAAGCTGTGACATG  545

seq1  ACAATCACAAAAAGGTAGGGG-AGGGAAAGATGGAAGAATT  590
      |||||||| |||||||||||| |||||||||||||||||||
seq2  ACAATCAC-AAAAGGTAGGGGTAGGGAAAGATGGAAGAATT  585