BAC Information

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BAC

Clone NameB6Ng01-013D08
Chromosome3 (Build37)
Map Location 34,094,008 - 34,095,093
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D08.bB6Ng01-013D08.g
ACCDH848086DH848087
length1,0831,071
definitionDH848086|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D08, 5' end.DH848087|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaacagcaagtacttggggagcacatttggggtagaagccaca
ctagttagtgttgagatttagattaagggtaattccccagtaattgtgca
aaacctaattttaaaatatcatagtttgagtctcattcatttaaagctag
acagagttaagcttaattattaatattttacatacctgggtaggccttgt
tggagacaccatgctttttttttttttaatttctttttttttgcatcagg
cctcttcttatctctttcagcacaacattcaattgcctggtgctttgtat
gttctacatttctttttgctctggtagctctttttcatgcagacctggat
aagagtgattactaattaaccatgtgacagagtcaaaattataggctgtg
ctgaaatctcctctatcaagaaaattagtccaaaattttaaaattttacc
tcaggtagatttttatgatctaggcaaaagacagctatatcttttgccaa
aatatcacaagaatggtccctaaccccgtaggttatcttgcctccctctg
aaatggtttgaactgggtctccatattgcccattgctttcagcaatactg
tctttcgagatccttctagaatggtctgttaaatctcacagtgttcaaac
actttcttagtccaaactcccaaagtccttcacattcttccccaaacaac
acaatcaggtctatcagagcaatagcctgctccctggcaccagcttcaat
cttagttacctaactattgctgggataagataccatgactaagacaagtt
acagaagaaagagtttatgcggtgcttacagtttcagaggctgttatagc
tgggagcatggcagcagcaggcaggcagcgcgacactggaacagtagctt
agaacctcatcttgagataaaaccatgagcagagagagctaactgggagt
ggggtggcctttgaaacctaaagcttgacccagtgcacacctcctccata
agccatgctcttaatcctttccaacagttcctcccaactgggaaccaagg
attcaaattagagatcggtgagaggtggggagt
gaattcacacatgactgacctcataagcctatagataaaacagcctaaag
aggcaaaatacatcctgaaattatggatgataaactacataaagatggag
aagaaaacagagtggaggacgggagaggagagcagtctctataattctcc
ctcttttggccaaatggacacattaaaagcgacttgttctcagctgcaga
taattgcagcctgtggtttgcagtggtcggctagaaatccttccgcctac
tcctttcccccctcggcaccgtctcagtcatttcattcgctattaacggc
agcattgtgttcaggataaagcatctaccaagtcacacttaaaaactgaa
aaatggaaaagaatcgcaaacggcacaagcttctgatgctgtgctgtgga
agatggtatttattctctgctccaggttcctgaccagcatggcaattccg
ttaggaacctaaagcagcttagagtctgagctgtacccactggacgcagt
gatgatgctctcagacaccagcgaaaacaagctccttcagaaagggaatg
ggtgcttctggttcatcccatctcgggggttactttatatttctaatcaa
agtcacccagatgactgcaggtataattgaagtcctttaccctctgctat
tgcaacagaattgccatagaattgcccacaactttcctaaatagaaaaca
gggctagactttctggccactagttcattgctttttgaattcagggtgat
tgtaaagaaagtatcttttaggaataaaaccagggttcagttatccccat
aactgaaaatacagcctaacattgcacatacaatacataatacacctata
ctagataaaacctatgtgagtaggggaaattttctgtgctattttaaacc
acagagcataataggttattaatataaaaagggcttttaactgctgaaag
cttgaaaaatacttataaatattgcccatgggcagcaattgcaaattgaa
gccaattgatgggaactggacgactgaatgctcagatcttggcatagaac
ggtttagtgtacactccatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34094008_34095093
seq2: B6Ng01-013D08.g_67_1137 (reverse)

seq1  GTATGTGAGTGTACACTAAAGCCGCTC-ATGCCCAAGATCTGGAAGCCAT  49
      ||||| |||||||||||||| ||| || ||| ||||||||||  || |||
seq2  GTATG-GAGTGTACACTAAA-CCGTTCTATG-CCAAGATCTG--AG-CAT  44

seq1  TAAGTTCGGTCACAGGTGCCCATCCAAATGTGGCCTCATTTTGACAATTG  99
      | || |||  ||   || ||||||  ||| |||| ||| |||| ||||||
seq2  TCAG-TCGTCCA---GTTCCCATC--AAT-TGGCTTCAATTTG-CAATTG  86

seq1  CTG-CCATGGCCAATATTTAT-AGTATTTTTCAAGCTTTCAGGCAGTTAA  147
      ||| |||||| |||||||||| ||||||||||||||||||| ||||||||
seq2  CTGCCCATGGGCAATATTTATAAGTATTTTTCAAGCTTTCA-GCAGTTAA  135

seq1  AAGCCC-TTTTATATTAATAACCTTATATTGCTCTGTGGTTTAAAATAGC  196
      |||||| |||||||||||||||| |||  |||||||||||||||||||||
seq2  AAGCCCTTTTTATATTAATAACC-TATTATGCTCTGTGGTTTAAAATAGC  184

seq1  ACAGAAAATTTCCCCTACTCACATAGGTTTTTATCTAGTATTAGGTGTAT  246
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ACAGAAAATTTCCCCTACTCACATAGG-TTTTATCTAGTA-TAGGTGTAT  232

seq1  TATGTATTGTATGTGCAATGTTAGGCTGTATTTTCAGTTATGGGGATAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTGTATGTGCAATGTTAGGCTGTATTTTCAGTTATGGGGATAAC  282

seq1  TGAACCCTGGTTTTTATTCCTAAAAGATACTTTCTTTACAATCACCCTGA  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTGG-TTTTATTCCTAAAAGATACTTTCTTTACAATCACCCTGA  331

seq1  ATTCAAAAAGCAATGAACTAGTGGCCAGAAAGTCTAGCCCTGTTTTCTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAGCAATGAACTAGTGGCCAGAAAGTCTAGCCCTGTTTTCTAT  381

seq1  TTAGGAAAGTTGTGGGCAATTCTATGGCAATTCTGTTGCAATAGCAGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGTTGTGGGCAATTCTATGGCAATTCTGTTGCAATAGCAGAGG  431

seq1  GTAAAGGACTTCAATTATACCTGCAGTCATCTGGGTGACTTTGATTAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGACTTCAATTATACCTGCAGTCATCTGGGTGACTTTGATTAGAA  481

seq1  ATATAAAGTAACCCCCGAGATGGGATGAACCAGAAGCACCCATTCCCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTAACCCCCGAGATGGGATGAACCAGAAGCACCCATTCCCTTT  531

seq1  CTGAAGGAGCTTGTTTTCGCTGGTGTCTGAGAGCATCATCACTGCGTCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAGCTTGTTTTCGCTGGTGTCTGAGAGCATCATCACTGCGTCCA  581

seq1  GTGGGTACAGCTCAGACTCTAAGCTGCTTTAGGTTCCTAACGGAATTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACAGCTCAGACTCTAAGCTGCTTTAGGTTCCTAACGGAATTGCC  631

seq1  ATGCTGGTCAGGAACCTGGAGCAGAGAATAAATACCATCTTCCACAGCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTCAGGAACCTGGAGCAGAGAATAAATACCATCTTCCACAGCAC  681

seq1  AGCATCAGAAGCTTGTGCCGTTTGCGATTCTTTTCCATTTTTCAGTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGAAGCTTGTGCCGTTTGCGATTCTTTTCCATTTTTCAGTTTTT  731

seq1  AAGTGTGACTTGGTAGATGCTTTATCCTGAACACAATGCTGCCGTTAATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGACTTGGTAGATGCTTTATCCTGAACACAATGCTGCCGTTAATA  781

seq1  GCGAATGAAATGACTGAGACGGTGCCGAGGGGGGAAAGGAGTAGGCGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATGAAATGACTGAGACGGTGCCGAGGGGGGAAAGGAGTAGGCGGAA  831

seq1  GGATTTCTAGCCGACCACTGCAAACCACAGGCTGCAATTATCTGCAGCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTAGCCGACCACTGCAAACCACAGGCTGCAATTATCTGCAGCTG  881

seq1  AGAACAAGTCGCTTTTAATGTGTCCATTTGGCCAAAAGAGGGAGAATTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGTCGCTTTTAATGTGTCCATTTGGCCAAAAGAGGGAGAATTAT  931

seq1  AGAGACTGCTCTCCTCTCCCGTCCTCCACTCTGTTTTCTTCTCCATCTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGCTCTCCTCTCCCGTCCTCCACTCTGTTTTCTTCTCCATCTTT  981

seq1  ATGTAGTTTATCATCCATAATTTCAGGATGTATTTTGCCTCTTTAGGCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTTATCATCCATAATTTCAGGATGTATTTTGCCTCTTTAGGCTG  1031

seq1  TTTTATCTATAGGCTTATGAGGTCAGTCATGTGTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTATAGGCTTATGAGGTCAGTCATGTGTGAATTC  1071