BAC Information

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BAC

Clone NameB6Ng01-013D20
Chromosome3 (Build37)
Map Location 56,539,834 - 56,760,895
singlet/doubletdoublet
Overlap geneLOC100040139
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D20.bB6Ng01-013D20.g
ACCDH848110DH848111
length1,124901
definitionDH848110|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D20, 5' end.DH848111|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,539,834 - 56,540,945)(56,759,995 - 56,760,895)
sequence
gaattctgtagcttttacagtcacgctcacaacagtaatgtcttttaaat
attttctcaggtactcgttgattatttgattatacccgggtattatttat
ttgtgcccagtgacccgggtataaagcctaccctattgccccaaagaact
atatgcttctgagataaacagaaagttagttttctttgtgactgttgtcc
tagtaagttgaccatgctccaatgaaggccacgcatccaaaagagggtgt
caccacttggacttgatggatgttagaaaaaaaaaaataaggacagcagt
tggatgggtaggaaagcaggcaagtctgggaggaattagggcaacagagt
gagcagaatcaaatgtattatataaaaatctaaaagaattaatagaaaaa
gtaaaaacacaaaatggcactgcatactcatttctgaagatctatatgca
cacataaaaatgctctaataatataacatgggagaaaaatgatcagatgg
ttcaagtgtacttccgtttactataatgtgtgtggctaggttaattatca
tgtgtttgatgaggttatatgcatgatattaatgtctcaggaacatggaa
gctttagttgtgtttgactttctcatatttagtgcaaatttttttttttg
tttttgtttttgtttgtttgttttttttgagacagggtttctctgtatag
tcctggctgtcctggaactcactctgtagactagactggcctcgaactca
gaaattggcttgcctctgcctcccaagtgctgggattaaaaggtgtgtag
tgcccaaattttttaaaaagtcatatatttgctgggaaagtatacatttt
gcatttgtaaccatactatctaaagaggaacaaagaaatttaatgtgaag
cagagggaaggattctgttaaggtgctattacccattgcagatgttaggc
aacagctctcagcatatggtggaactatttataaacagtataataaataa
tagttatagtgataaataaatagcgactggaagagcattcatttaggtgt
ctgacaattaagaggtttaagatgtttttcctctttgaagggttcaaaag
acagaccatggcttatataacaga
gaattcatttctgaataaagaggtttagagcaaccttgaaaaagtacagt
ttgaactgggcttgcaacatggacatgctttttaaagaccagggagagaa
gatgttacaaggagtagaagtaccgagaaagacagaacaatagagggctg
ggagaggaaagtgagacactaggaactgaggtgtggtcacaaatgtttca
catcagggaaccccatcagtgaacacgtcctctgtggctcccacgcttct
ttattatgaatctagtctaggaaaagcaaactacctaaaataaaactaga
atacagatctatgacatgtatcaagaaagaatcatagtctgtatgcagat
aaggctttgcaatttcataggcttaaaactggttcacaattgtgttctgg
cagcaattgcttcatttcccaatgtaaaagaaataaagggttcttattaa
aaactattatattatattatatcatattatattatactacattattaagc
aaagtgaataaagcaaacaaccaaattcaataccttaagtgtcagtagtc
acactttatgaaaaattatattcttctatcttcattgtctgatatataca
tgcatatattttaatgtatcagggatgtgtttctattcattgtacatctt
caatgggtaattattctgctacagtagcttctattgtacagaagtatcat
gatttatgtgactggtttcctatggttagtcaactgggtcatatatactt
ttatttttaaatagaaagcattataatgaacagccttacaatggtacctt
tgtatatatacataaacaattccttaggataaatacccagatagtgtatt
ttgtttcatgtgtggtgcagtgtggtgtgatggaggtgacagtggtggtg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56539834_56540945
seq2: B6Ng01-013D20.b_48_1171

seq1  GAATTCTGTAGCTTTTACAGTCACGCTCACAACAGTAATGTCTTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTTTTACAGTCACGCTCACAACAGTAATGTCTTTTAAAT  50

seq1  ATTTTCTCAGGTACTCGTTGATTATTTGATTATACCCGGGTATTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAGGTACTCGTTGATTATTTGATTATACCCGGGTATTATTTAT  100

seq1  TTGTGCCCAGTGACCCGGGTATAAAGCCTACCCTATTGCCCCAAAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCAGTGACCCGGGTATAAAGCCTACCCTATTGCCCCAAAGAACT  150

seq1  ATATGCTTCTGAGATAAACAGAAAGTTAGTTTTCTTTGTGACTGTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTCTGAGATAAACAGAAAGTTAGTTTTCTTTGTGACTGTTGTCC  200

seq1  TAGTAAGTTGACCATGCTCCAATGAAGGCCACGCATCCAAAAGAGGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTGACCATGCTCCAATGAAGGCCACGCATCCAAAAGAGGGTGT  250

seq1  CACCACTTGGACTTGATGGATGTTAGAAAAAAAAAAATAAGGACAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTGGACTTGATGGATGTTAGAAAAAAAAAAATAAGGACAGCAGT  300

seq1  TGGATGGGTAGGAAAGCAGGCAAGTCTGGGAGGAATTAGGGCAACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTAGGAAAGCAGGCAAGTCTGGGAGGAATTAGGGCAACAGAGT  350

seq1  GAGCAGAATCAAATGTATTATATAAAAATCTAAAAGAATTAATAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAATCAAATGTATTATATAAAAATCTAAAAGAATTAATAGAAAAA  400

seq1  GTAAAAACACAAAATGGCACTGCATACTCATTTCTGAAGATCTATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACACAAAATGGCACTGCATACTCATTTCTGAAGATCTATATGCA  450

seq1  CACATAAAAATGCTCTAATAATATAACATGGGAGAAAAATGATCAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAAATGCTCTAATAATATAACATGGGAGAAAAATGATCAGATGG  500

seq1  TTCAAGTGTACTTCCGTTTACTATAATGTGTGTGGCTAGGTTAATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGTACTTCCGTTTACTATAATGTGTGTGGCTAGGTTAATTATCA  550

seq1  TGTGTTTGATGAGGTTATATGCATGATATTAATGTCTCAGGAACATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATGAGGTTATATGCATGATATTAATGTCTCAGGAACATGGAA  600

seq1  GCTTTAGTTGTGTTTGACTTTCTCATATTTAGTGCAAATTTTTTTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGTTGTGTTTGACTTTCTCATATTTAGTGCAAATTTTTTTTTTTG  650

seq1  TTTTTGTTTTTGTTTGTTTGTTTTTTTTGAGACAGGGTTTCTCTGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTGTTTGTTTTTTTTGAGACAGGGTTTCTCTGTATAG  700

seq1  TCCTGGCTGTCCTGGAACTCACTCTGTAGACTAGACTGGCCTCGAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTCCTGGAACTCACTCTGTAGACTAGACTGGCCTCGAACTCA  750

seq1  GAAATTGGCTTGCCTCTGCCTCCCAAGTGCTGGGATT-AAAGGTGTGTAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAATTGGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGGTGTGTAG  800

seq1  TGCC--AAATTTTTAAAAAGTCATATATTTGCTGGGAAAGTATACA-TTT  846
      ||||  || ||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCCAAATTTTTTAAAAAGTCATATATTTGCTGGGAAAGTATACATTTT  850

seq1  GCATTTGTAACCATACTATCTAAAGA-GAACAAAGAAATTTAATGTGAAG  895
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCATTTGTAACCATACTATCTAAAGAGGAACAAAGAAATTTAATGTGAAG  900

seq1  CAGAGGGAAGGATTCTGTTAAGGTGCTA-TACCCATTGCAGATGTTA-GC  943
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CAGAGGGAAGGATTCTGTTAAGGTGCTATTACCCATTGCAGATGTTAGGC  950

seq1  AACAGCTCTCAGCATATGGTGGAACTAATTTATAAACAGTATAATAAATA  993
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AACAGCTCTCAGCATATGGTGGAACT-ATTTATAAACAGTATAATAAAT-  998

seq1  AATAGTATAAGTGAATAAATAAATAGCGACTG--AGAGCATTCATTTA-G  1040
      ||||||   |||| ||||||||||||||||||  |||||||||||||| |
seq2  AATAGTTATAGTG-ATAAATAAATAGCGACTGGAAGAGCATTCATTTAGG  1047

seq1  TGTCTGACAAT--AGAGTATTAAGATG--TTTCCTCTATGAAGGGTCCAA  1086
      |||||||||||  ||||  ||||||||  |||||||| |||||||| |||
seq2  TGTCTGACAATTAAGAGGTTTAAGATGTTTTTCCTCTTTGAAGGGTTCAA  1097

seq1  AAG-CAGACACTTGCTTATATAACAGA  1112
      ||| |||||  | ||||||||||||||
seq2  AAGACAGACCATGGCTTATATAACAGA  1124

seq1: chr3_56759995_56760895
seq2: B6Ng01-013D20.g_68_967 (reverse)

seq1  CACCACCACTGTCACCTCCATCACACCACACTGCACCACACAATGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACCACCACTGTCACCTCCATCACACCACACTGCACCACAC-ATGAAACA  49

seq1  AAATACACTATCTGGGTATTTATCCTAAGGAATTGTTTATGTATATATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACTATCTGGGTATTTATCCTAAGGAATTGTTTATGTATATATAC  99

seq1  AAAGGTACCATTGTAAGGCTGTTCATTATAATGCTTTCTATTTAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCATTGTAAGGCTGTTCATTATAATGCTTTCTATTTAAAAATA  149

seq1  AAAGTATATATGACCCAGTTGACTAACCATAGGAAACCAGTCACATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATATGACCCAGTTGACTAACCATAGGAAACCAGTCACATAAAT  199

seq1  CATGATACTTCTGTACAATAGAAGCTACTGTAGCAGAATAATTACCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACTTCTGTACAATAGAAGCTACTGTAGCAGAATAATTACCCATT  249

seq1  GAAGATGTACAATGAATAGAAACACATCCCTGATACATTAAAATATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTACAATGAATAGAAACACATCCCTGATACATTAAAATATATGC  299

seq1  ATGTATATATCAGACAATGAAGATAGAAGAATATAATTTTTCATAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATCAGACAATGAAGATAGAAGAATATAATTTTTCATAAAGTG  349

seq1  TGACTACTGACACTTAAGGTATTGAATTTGGTTGTTTGCTTTATTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTGACACTTAAGGTATTGAATTTGGTTGTTTGCTTTATTCACTT  399

seq1  TGCTTAATAATGTAGTATAATATAATATGATATAATATAATATAATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATAATGTAGTATAATATAATATGATATAATATAATATAATAGTT  449

seq1  TTTAATAAGAACCCTTTATTTCTTTTACATTGGGAAATGAAGCAATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGAACCCTTTATTTCTTTTACATTGGGAAATGAAGCAATTGCT  499

seq1  GCCAGAACACAATTGTGAACCAGTTTTAAGCCTATGAAATTGCAAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACACAATTGTGAACCAGTTTTAAGCCTATGAAATTGCAAAGCCT  549

seq1  TATCTGCATACAGACTATGATTCTTTCTTGATACATGTCATAGATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATACAGACTATGATTCTTTCTTGATACATGTCATAGATCTGTA  599

seq1  TTCTAGTTTTATTTTAGGTAGTTTGCTTTTCCTAGACTAGATTCATAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTTTATTTTAGGTAGTTTGCTTTTCCTAGACTAGATTCATAATA  649

seq1  AAGAAGCGTGGGAGCCACAGAGGACGTGTTCACTGATGGGGTTCCCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCGTGGGAGCCACAGAGGACGTGTTCACTGATGGGGTTCCCTGAT  699

seq1  GTGAAACATTTGTGACCACACCTCAGTTCCTAGTGTCTCACTTTCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACATTTGTGACCACACCTCAGTTCCTAGTGTCTCACTTTCCTCTC  749

seq1  CCAGCCCTCTATTGTTCTGTCTTTCTCGGTACTTCTACTCCTTGTAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCTATTGTTCTGTCTTTCTCGGTACTTCTACTCCTTGTAACAT  799

seq1  CTTCTCTCCCTGGTCTTTAAAAAGCATGTCCATGTTGCAAGCCCAGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCCTGGTCTTTAAAAAGCATGTCCATGTTGCAAGCCCAGTTCA  849

seq1  AACTGTACTTTTTCAAGGTTGCTCTAAACCTCTTTATTCAGAAATGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACTTTTTCAAGGTTGCTCTAAACCTCTTTATTCAGAAATGAATT  899

seq1  C  901
      |
seq2  C  900