BAC Information

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BAC

Clone NameB6Ng01-013F22
Chromosome3 (Build37)
Map Location 13,153,447 - 13,251,757
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F22.bB6Ng01-013F22.g
ACCDH848199DH848200
length1,1321,131
definitionDH848199|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F22, 5' end.DH848200|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,250,605 - 13,251,757)(13,153,447 - 13,154,606)
sequence
gaattctttaagacttgcttgtcaaaacaaacattcttaaaagaactcta
tgaaatttctttcaaaataattcattccaaaaggcagattctatcaccta
agagcctaaatatgacttctattgcctgtagctttctctcttccagcact
tttctcttccttgtacactttgtgagaactgtgttcctccgtgtaccctc
tgaatcccctcttgggcagctttttattgcatccctttctaatctactat
tttaccagttccatttctcctacgggagtgtacagtgtcagagctgggga
tattatttatcttctcgtcttagtgtagaatcactgagacagtgtccttt
agcccagactgaccttagattttgtgtgatcaagattgacctctaagttc
tggtaccattgcccctccgaattgtgtcagatttgcagacacctgcaact
gctatgcctaattcatatagtgctgaggattaaatttaggttttccagcc
tgccaacttttgtatacttcaaaattacatataactttcatttttatact
tctttgattagaaaaggcttctgattatgtccatgcagagtacccatgct
tgttgagagaatcccacaaaatttattatgagatttcacttaggtctttg
ataattttttcagtccaaatttcaaccagttctacattcaattagtgagt
cattatttgtatcctactactaacttgtagcttccttcagccctaaagga
ggctgatccagactttgaccttgctgcccctgagatggtaattacctagg
gtgggagccttctgacctagatggctcttttgttctgccacctgccactg
ctctctccaagacactgctacctactaagaagcccctgagatattgctga
ggaacatccaattctgcacatcactacaggctggctccaacaccaggatg
gactgtgggaggatgggccttacccttttatagcaagctctctagtaaat
ggagggcttggacagatcacgtctggtctccattatctctcgagtctaag
tctcctcagcccagcctgcttcgaggtgtaccagttcaagtaggccaagg
ccagataaaaagtaacttttagacatttaata
gaattccttcaaattactgttcatttctaatgcaagttacatttgtgagg
caaagtacaaaagaaataattatatatctggtctcattctcatggagaat
aattggtaaaaattatggttaatattagaagatctgtttaatctttatgt
ataaaccaagtgactataatacttaacttttaaattttacttgcataatt
agatttaaacagaatggtaaatgtgtggcaacactagtatgtttctttgt
tattgtgatcaataccatgaccaaaagcaacttgaggagaaaaagtttta
ttttagttctattattgtttccccatcactggggaaagtcaaagcaggaa
atcaagtagggtgtgaactgaaacagagaccaaggagaaatgcagcaaag
tggcttacttcctcctgcttgcttacctgccttccttatacaccacagaa
ccactgcctagatatagcactgcctaagagccataattcaagtaaagttc
ccccagacatacccacatgtcaaactgatgaagataatcctcagttgagg
ttccctctactaagccatgtgtaggtttttaaaagtttgacaaaaatgaa
caatgataggaatgagacagacatctgatctggacgatgtggttgtttat
ttttcttgccaacattattgagtctcttgctcaaattgaacatgtttcct
ctgtctttgtcaaacttgagatgttgcttgcattttgagcattgttgact
ggacattctgggttaaatgactggtttttggcagttttcagtgcagagtt
tacaatcatattcactgaggcacatttcaacactgttaacagagccttac
agtgtatctataaagtacactccaatgtgccctggcagcaagtcaacatt
cagtttgcatgacatgaaggccatttgagccaccaatcactctctacagt
atcatcacatctagcattggcactgtccagatcatctccaaatgacaaat
aagcaatggggaaagtgattctggcaatgacttggacttaacggggacaa
cagtgtcaccgaatgttatcaaattacacatctgttctctcatgggttaa
cagtgtgactaattataccttaggtgcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13250605_13251757
seq2: B6Ng01-013F22.b_46_1177 (reverse)

seq1  TATTAAAATGTCTTAAAAAAGTTACTGTTTTATCTTGGCCTGTGGCCTAC  50
      |||| ||||||||   |||||||||| ||||||| |||||| ||||||||
seq2  TATT-AAATGTCT---AAAAGTTACT-TTTTATC-TGGCCT-TGGCCTAC  43

seq1  TTGAACTGGGTACACCTCGGAGGCAGGCTGGGGCTGAAGGAGACTTAGAC  100
      ||||||| |||||||||| || ||||||| |||||| |||||||||||||
seq2  TTGAACT-GGTACACCTC-GAAGCAGGCT-GGGCTG-AGGAGACTTAGAC  89

seq1  TTCGAGAGATTAATGGAGACCAAGACGTGATTCTGTTCAAGGCCCTCCAA  150
       |||||||| ||||||||||| |||||||| ||||| ||| ||||||| |
seq2  -TCGAGAGA-TAATGGAGACC-AGACGTGA-TCTGTCCAA-GCCCTCC-A  133

seq1  TTTACTAAGAGAGCCTGCTTATAAAAGGGTAAGGCCCATCCTCCCACAGT  200
      |||||| ||||||| ||| |||||||||||||||||||||||||||||||
seq2  TTTACT-AGAGAGCTTGC-TATAAAAGGGTAAGGCCCATCCTCCCACAGT  181

seq1  CCATTCTTGGTGTTTGGAGCCAGCCTGTAGGTGATGTGCAGAATTGGATG  250
      ||| || ||||| |||||||||||||||| ||||||||||||||||||||
seq2  CCA-TCCTGGTG-TTGGAGCCAGCCTGTA-GTGATGTGCAGAATTGGATG  228

seq1  TTCCTCAGCAATATCTCAGGGGCTTCTTAGTAGGTAGCAGTGTCTTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGCAATATCTCAGGGGCTTCTTAGTAGGTAGCAGTGTCTTGGAG  278

seq1  AGAGCAGTGGCAGGTGGCAGAACAAAAGAGCCATCTAGGTCAGAAGGCT-  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAGCAGTGGCAGGTGGCAGAACAAAAGAGCCATCTAGGTCAGAAGGCTC  328

seq1  CCACCCTAGGTAATTACCATCTCAGGGGCAGCAAGGTCAAAGTCTGGATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTAGGTAATTACCATCTCAGGGGCAGCAAGGTCAAAGTCTGGATC  378

seq1  AGCCTCCTTTAGGGCTGAAGGAAGCTACAAGTTAGTAGTAGGATACAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTTAGGGCTGAAGGAAGCTACAAGTTAGTAGTAGGATACAAAT  428

seq1  AATGACTCACTAATTGAATGTAGAACTGGTTGAAATTTGGACTGAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCACTAATTGAATGTAGAACTGGTTGAAATTTGGACTGAAAAAA  478

seq1  TTATCAAAGACCTAAGTGAAATCTCATAATAAATTTTGTGGGATTCTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGACCTAAGTGAAATCTCATAATAAATTTTGTGGGATTCTCTC  528

seq1  AACAAGCATGGGTACTCTGCATGGACATAATCAGAAGCCTTTTCTAATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCATGGGTACTCTGCATGGACATAATCAGAAGCCTTTTCTAATCA  578

seq1  AAGAAGTATAAAAATGAAAGTTATATGTAATTTTGAAGTATACAAAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTATAAAAATGAAAGTTATATGTAATTTTGAAGTATACAAAAGTT  628

seq1  GGCAGGCTGGAAAACCTAAATTTAATCCTCAGCACTATATGAATTAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGGAAAACCTAAATTTAATCCTCAGCACTATATGAATTAGGCA  678

seq1  TAGCAGTTGCAGGTGTCTGCAAATCTGACACAATTCGGAGGGGCAATGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTGCAGGTGTCTGCAAATCTGACACAATTCGGAGGGGCAATGGT  728

seq1  ACCAGAACTTAGAGGTCAATCTTGATCACACAAAATCTAAGGTCAGTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAACTTAGAGGTCAATCTTGATCACACAAAATCTAAGGTCAGTCTG  778

seq1  GGCTAAAGGACACTGTCTCAGTGATTCTACACTAAGACGAGAAGATAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGACACTGTCTCAGTGATTCTACACTAAGACGAGAAGATAAAT  828

seq1  AATATCCCCAGCTCTGACACTGTACACTCCCGTAGGAGAAATGGAACTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCAGCTCTGACACTGTACACTCCCGTAGGAGAAATGGAACTGG  878

seq1  TAAAATAGTAGATTAGAAAGGGATGCAATAAAAAGCTGCCCAAGAGGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTAGATTAGAAAGGGATGCAATAAAAAGCTGCCCAAGAGGGGA  928

seq1  TTCAGAGGGTACACGGAGGAACACAGTTCTCACAAAGTGTACAAGGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGGTACACGGAGGAACACAGTTCTCACAAAGTGTACAAGGAAGA  978

seq1  GAAAAGTGCTGGAAGAGAGAAAGCTACAGGCAATAGAAGTCATATTTAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGCTGGAAGAGAGAAAGCTACAGGCAATAGAAGTCATATTTAGG  1028

seq1  CTCTTAGGTGATAGAATCTGCCTTTTGGAATGAATTATTTTGAAAGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGTGATAGAATCTGCCTTTTGGAATGAATTATTTTGAAAGAAAT  1078

seq1  TTCATAGAGTTCTTTTAAGAATGTTTGTTTTGACAAGCAAGTCTTAAAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGTTCTTTTAAGAATGTTTGTTTTGACAAGCAAGTCTTAAAGA  1128

seq1  ATTC  1153
      ||||
seq2  ATTC  1132

seq1: chr3_13153447_13154606
seq2: B6Ng01-013F22.g_65_1195

seq1  GAATTCCTTCAAATTACTGTTCATTTCTAATGCAAGTTACATTTGTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAATTACTGTTCATTTCTAATGCAAGTTACATTTGTGAGG  50

seq1  CAAAGTACAAAAGAAATAATTATATATCTGGTCTCATTCTCATGGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACAAAAGAAATAATTATATATCTGGTCTCATTCTCATGGAGAAT  100

seq1  AATTGGTAAAAATTATGGTTAATATTAGAAGATCTGTTTAATCTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAAAAATTATGGTTAATATTAGAAGATCTGTTTAATCTTTATGT  150

seq1  ATAAACCAAGTGACTATAATACTTAACTTTTAAATTTTACTTGCATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAAGTGACTATAATACTTAACTTTTAAATTTTACTTGCATAATT  200

seq1  AGATTTAAACAGAATGGTAAATGTGTGGCAACACTAGTATGTTTCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAACAGAATGGTAAATGTGTGGCAACACTAGTATGTTTCTTTGT  250

seq1  TATTGTGATCAATACCATGACCAAAAGCAACTTGAGGAGAAAAAGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATCAATACCATGACCAAAAGCAACTTGAGGAGAAAAAGTTTTA  300

seq1  TTTTAGTTCTATTATTGTTTCCCCATCACTGGGGAAAGTCAAAGCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCTATTATTGTTTCCCCATCACTGGGGAAAGTCAAAGCAGGAA  350

seq1  ATCAAGTAGGGTGTGAACTGAAACAGAGACCAAGGAGAAATGCAGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAGGGTGTGAACTGAAACAGAGACCAAGGAGAAATGCAGCAAAG  400

seq1  TGGCTTACTTCCTCCTGCTTGCTTACCTGCCTTCCTTATACACCACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACTTCCTCCTGCTTGCTTACCTGCCTTCCTTATACACCACAGAA  450

seq1  CCACTGCCTAGATATAGCACTGCCTAAGAGCCATAATTCAAGTAAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTAGATATAGCACTGCCTAAGAGCCATAATTCAAGTAAAGTTC  500

seq1  CCCCAGACATACCCACATGTCAAACTGATGAAGATAATCCTCAGTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACATACCCACATGTCAAACTGATGAAGATAATCCTCAGTTGAGG  550

seq1  TTCCCTCTACTAAGCCATGTGTAGGTTTTTAAAAGTTTGACAAAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTACTAAGCCATGTGTAGGTTTTTAAAAGTTTGACAAAAATGAA  600

seq1  CAATGATAGGAATGAGACAGACATCTGATCTGGACGATGTGGTTGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATAGGAATGAGACAGACATCTGATCTGGACGATGTGGTTGTTTAT  650

seq1  TTTTCTTGCCAACATTATTGAGTCTCTTGCTCAAATTGAACATGTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCCAACATTATTGAGTCTCTTGCTCAAATTGAACATGTTTCCT  700

seq1  CTGTCTTTGTCAAACTTGAGATGTTGCTTGCATTTTGAGCATTGTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGTCAAACTTGAGATGTTGCTTGCATTTTGAGCATTGTTGACT  750

seq1  GGACATTCT-GGTTAAATGACTGGTTTTTGGCAGTTTTCAGTGCAGAGTT  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCTGGGTTAAATGACTGGTTTTTGGCAGTTTTCAGTGCAGAGTT  800

seq1  TACAATCATATTCACTGAGGCACATTTCAACACTGTTAACAGAGCCTTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCATATTCACTGAGGCACATTTCAACACTGTTAACAGAGCCTTAC  850

seq1  AGTGTATCTATAAAGTACACTCCAATGTGCCCTGGCAGCAAGTCAAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  AGTGTATCTATAAAGTACACTCCAATGTGCCCTGGCAGCAAGTCAA--CA  898

seq1  TTCAGTTTGCAATGACATGAAGGCCCATTTGAGGCCCACCAAATCACTCT  949
      |||||||||| |||||||||||| |||||||||  ||||| |||||||||
seq2  TTCAGTTTGC-ATGACATGAAGG-CCATTTGAG--CCACC-AATCACTCT  943

seq1  CTACAGTAATCATCACATCTAGCATTGGCACTTGGTCCCAGATCATTCTC  999
      ||||||| ||||||||||||||||||||||||  || |||||||| ||||
seq2  CTACAGT-ATCATCACATCTAGCATTGGCACT--GT-CCAGATCA-TCTC  988

seq1  CCAAAATGAACAAATAAAGCAATGGGGAAAAGTGATTTCTTGGCAATGAC  1049
      |  ||||| |||||| ||||||||||| |||||||||   ||||||||||
seq2  C--AAATG-ACAAAT-AAGCAATGGGG-AAAGTGATT--CTGGCAATGAC  1031

seq1  TTGAACTTAAAACGGTGACAACAGCTGTTTCAGCAGATGTTATTCACATA  1099
      ||| ||||  ||||| |||||||   || ||| |  |||||||   || |
seq2  TTGGACTT--AACGGGGACAACA---GTGTCACCGAATGTTAT---CAAA  1073

seq1  ATACAACATCTGTTTTCTCCATGGTGTAAC--TGTGACTAAATTAATACC  1147
       ||| ||||||||| ||| |||||  ||||  |||||||||  | |||||
seq2  TTAC-ACATCTGTTCTCT-CATGGGTTAACAGTGTGACTAA--TTATACC  1119

seq1  TCTAGGTGCCCTA  1160
      | |||||||| ||
seq2  T-TAGGTGCCTTA  1131