BAC Information

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BAC

Clone NameB6Ng01-013K15
Chromosome3 (Build37)
Map Location 149,345,699 - 149,468,663
singlet/doubletdoublet
Overlap geneLOC100040620
Upstream geneLphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K15.bB6Ng01-013K15.g
ACCDH848424DH848425
length1,043987
definitionDH848424|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K15, 5' end.DH848425|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,345,699 - 149,346,744)(149,467,688 - 149,468,663)
sequence
gaattctgggcttcatttaggatacaactggtattttatgtaattattgg
agggacacttgcagctgatgttaacagtttacatctttccagcaatctct
aacagcaaacttgtttcaaatgagtccctgagaaaaacacattaactttg
gaaggagtgatggaacctcatttccttggtggaggagctcagcctcatta
ttaataaagacaaacaagtgcagagaacgagcgtttacccccttttaatg
gacttttaagtcagtttctcaagttgttgatgaatgcaataaaataaaat
taaattaaaagaaatgtcaaggacaagaaaacaaatttaaaaattaacaa
agcccacaataaattagcaattacatgtccatcaaaggttttaaagacgg
ttgatcttggcaaaaagtgaaaaaaaaaacaacgttattgtagttttagc
gggaacaattattatcattgcaaattacttaaactattaagctgagaata
attcagaaatatcattagcagtcaaattactgaaaaggcctgttttcttt
ccctctttgtttaatttaaattaatgtctgcttattctcacacaagcaga
aaatgctgataaataattccagagcatgcctaaacatctcccttcacagc
tagcttctaatttgatctctggagacccttctcaggagctgaataaaata
ttttcatttattctaagagagcctccttcctccaccacacagttctaatc
tcgggctgttccgtaatgcctctagatgaagtcttcaccaaatcattaaa
cttgttcaataacgacgtaacaaagcacaggagacttggcgtcagggcag
caaagatgttttttcaatgggagagaaagagggagcgagagacagaaaaa
aactttataagccaacttaattttctagggcagttggagagattattgaa
cacttgaactttgtagcaggtaggggacaaggagactctcaagtccttgg
tggcagacgtctgggcgagggcccttacatgtgagtgggagca
gaattcagggaaatgaaaagcaatacagagcacccacagtgactgatttc
cagggcccagttataaacacaccatccgtgtcatcgcagtagacagtcag
tcaccatagatgccatgcccctgaccccacccactcttaccctgtgaaaa
gcacaaatgtcttcacactgactgtgttgtcagctttgatacatccaacc
ccagcttctctggagaaataatgagataataagtaagcggtgaatagaga
aattggcaggagctatggtaattgctgtaatcaaaacaaagatgtgtcta
atggcttcgtgtttgtctgctccaggtagctttgtttctgttcctgattt
ctcagaaaaactcacagtggcacagctttcatttatctctcaaacttggg
caaagtgcaagacacaataaaaccagttttaaatcttcaccgtgtgatct
cagaacaatggcacagaaaatccaggttctccccctttatgtatctctta
caacttgggggacctttaacttactaaggaattgttttgcaatcctttgt
aaatatcaccaatggttacttacaacaaacaaaaataaatattatcacta
acatacattttttgatggaactaatttcatcatttactttgacagggtaa
aaccaaaattgcatttacgtgcatatgtataaatatataaataaatatgt
gtgttcatatttattgccttttcgagcagctagtctgtctgttcacggcg
tctcatttatttttcatttccttcacaattatctatgagcaaactggaca
ttttataacatcaggaaatctaatctatattggaatacaatgaggaactc
tatactctgtatggtatgaaatacttattacatagaaaattaaacctttg
tatattgttttaatggaaatttttaacactagttttttattcctgctttc
ttatcttccaatcctaagcaggtaaataatctcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149345699_149346744
seq2: B6Ng01-013K15.b_47_1089

seq1  GAATTCTGGGCTTCATTTAGGATACAACTGGTATTTTATGTAATTATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTTCATTTAGGATACAACTGGTATTTTATGTAATTATTGG  50

seq1  AGGGACACTTGCAGCTGATGTTAACAGTTTACATCTTTCCAGCAATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACTTGCAGCTGATGTTAACAGTTTACATCTTTCCAGCAATCTCT  100

seq1  AACAGCAAACTTGTTTCAAATGAGTCCCTGAGAAAAACACATTAACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAACTTGTTTCAAATGAGTCCCTGAGAAAAACACATTAACTTTG  150

seq1  GAAGGAGTGATGGAACCTCATTTCCTTGGTGGAGGAGCTCAGCCTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTGATGGAACCTCATTTCCTTGGTGGAGGAGCTCAGCCTCATTA  200

seq1  TTAATAAAGACAAACAAGTGCAGAGAACGAGCGTTTACCCCCTTTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGACAAACAAGTGCAGAGAACGAGCGTTTACCCCCTTTTAATG  250

seq1  GACTTTTAAGTCAGTTTCTCAAGTTGTTGATGAATGCAATAAAATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAAGTCAGTTTCTCAAGTTGTTGATGAATGCAATAAAATAAAAT  300

seq1  TAAATTAAAAGAAATGTCAAGGACAAGAAAACAAATTTAAAAATTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAAGAAATGTCAAGGACAAGAAAACAAATTTAAAAATTAACAA  350

seq1  AGCCCACAATAAATTAGCAATTACATGTCCATCAAAGGTTTTAAAGACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACAATAAATTAGCAATTACATGTCCATCAAAGGTTTTAAAGACGG  400

seq1  TTGATCTTGGCAAAAAGTGAAAAAAAAAACAACGTTATTGTAGTTTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTGGCAAAAAGTGAAAAAAAAAACAACGTTATTGTAGTTTTAGC  450

seq1  GGGAACAATTATTATCATTGCAAATTACTTAAACTATTAAGCTGAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAATTATTATCATTGCAAATTACTTAAACTATTAAGCTGAGAATA  500

seq1  ATTCAGAAATATCATTAGCAGTCAAATTACTGAAAAGGCCTGTTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATATCATTAGCAGTCAAATTACTGAAAAGGCCTGTTTTCTTT  550

seq1  CCCTCTTTGTTTAATTTAAATTAATGTCTGCTTATTCTCACACAAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGTTTAATTTAAATTAATGTCTGCTTATTCTCACACAAGCAGA  600

seq1  AAATGCTGATAAATAATTCCAGAGCATGCCTAAACATCTCCCTTCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGATAAATAATTCCAGAGCATGCCTAAACATCTCCCTTCACAGC  650

seq1  TAGCTTCTAATTTGATCTCTGGAGACCCTTCTCAGGAGCTGAATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTAATTTGATCTCTGGAGACCCTTCTCAGGAGCTGAATAAAATA  700

seq1  TTTTCATTTATTCTAAGAGAGCCTCCTTCCTCCACCACACAGTTCTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTATTCTAAGAGAGCCTCCTTCCTCCACCACACAGTTCTAATC  750

seq1  TCGGGCTGTTCCGTAATGCCTCTAGATGAAGTCTTCACCAAATCATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCTGTTCCGTAATGCCTCTAGATGAAGTCTTCACCAAATCATTAAA  800

seq1  CTTGTTCAATAACGACGTAACAAAGCACAGGAGACTTGGCGTCAGGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAATAACGACGTAACAAAGCACAGGAGACTTGGCGTCAGGGCAG  850

seq1  CAAAGATG-TTTTTCAAATGGAGAGAAAGAGGGAGCGAGAGACAGAAAAA  899
      |||||||| ||||||||  |||||||||||||||||||||||||| ||||
seq2  CAAAGATGTTTTTTCAATGGGAGAGAAAGAGGGAGCGAGAGACAG-AAAA  899

seq1  AAACTTTAATAAGCCAACTTAAATTTCTAGGGCAAGTTGGAGAGATTATT  949
      ||||||| |||||||||||||| |||||||||| ||||||||||||||||
seq2  AAACTTT-ATAAGCCAACTTAATTTTCTAGGGC-AGTTGGAGAGATTATT  947

seq1  GAACACTTGAAACTTTGTAGCAGGTAGGGGACAAGGAGACTCTCAAGTCC  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTG-AACTTTGTAGCAGGTAGGGGACAAGGAGACTCTCAAGTCC  996

seq1  TTGGTGCCAGAACGTCT-GGCGAGGGCCCTTACATGTGAGTGGGAGCA  1046
      |||||| ||| |||||| ||||||||||||||||||||||||||||||
seq2  TTGGTGGCAG-ACGTCTGGGCGAGGGCCCTTACATGTGAGTGGGAGCA  1043

seq1: chr3_149467688_149468663
seq2: B6Ng01-013K15.g_68_1054 (reverse)

seq1  CTAGGAGATTATTTA-CTGCTTAGGA-TGTGAGATAAG-AAGCAAGAAT-  46
      ||||||||||||||| |||||||||| ||  ||||||| ||||| |||| 
seq2  CTAGGAGATTATTTACCTGCTTAGGATTGGAAGATAAGAAAGCAGGAATA  50

seq1  AAAAACTAGCTGATTAAAATATTTCAATAAAAC-ATATACCAAGGTTT-A  94
      ||||||||| || ||||||  || || |||||| |||||| ||||||| |
seq2  AAAAACTAG-TG-TTAAAAATTTCCATTAAAACAATATACAAAGGTTTAA  98

seq1  TTTTCTATGT-ATTAGTATATCATA-CATACAGAGTATAGAGTT-CTCAT  141
      |||||||||| || ||||| ||||| |||||||||||||||||| |||||
seq2  TTTTCTATGTAATAAGTATTTCATACCATACAGAGTATAGAGTTCCTCAT  148

seq1  TGTATTCAAATATAGAATAGATTT-CTGATGTTATAAAATGT-CAGTTTG  189
      ||||||| |||||||| ||||||| ||||||||||||||||| |||||||
seq2  TGTATTCCAATATAGATTAGATTTCCTGATGTTATAAAATGTCCAGTTTG  198

seq1  CTCATAGATAATTGTGAAGGAAATGAAAAATAAATGAGACGCCGTGAACA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGATAATTGTGAAGGAAATGAAAAATAAATGAGACGCCGTGAACA  248

seq1  GACAGACTAGCTGCTCGAAAAGGCAATAAATATGAACACACATATTTATT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTAGCTGCTCGAAAAGGCAATAAATATGAACACACATATTTATT  298

seq1  TATATATTTATACATATGCACGT-AATGCAATTTTGGTTTTACCCTGTCA  338
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TATATATTTATACATATGCACGTAAATGCAATTTTGGTTTTACCCTGTC-  347

seq1  AAAGTAAATGATGAAATTAGTTCCATC-AAAAATGTATGTTAGTGATAAT  387
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGTAAATGATGAAATTAGTTCCATCAAAAAATGTATGTTAGTGATAAT  397

seq1  ATTTATTTTTGTTTGTTGTAAGTAACCATTGGTGATATTTACAAAGGATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTGTTTGTTGTAAGTAACCATTGGTGATATTTACAAAGGATT  447

seq1  GCAAAACAATTCCTTAGTAAGTTAAAGGT-CCCCAAGTTGTAAGAGATAC  486
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAAAACAATTCCTTAGTAAGTTAAAGGTCCCCCAAGTTGTAAGAGATAC  497

seq1  ATAAAGGGGGAGAACCTGGATTTTCTGTGCCATTGTTCTGAGATCACACG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGGGAGAACCTGGATTTTCTGTGCCATTGTTCTGAGATCACACG  547

seq1  GTGAAGATTTAAAACTGGTTTTATTGTGTCTTGCACTTTGCCCAAGTTTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATTTAAAACTGGTTTTATTGTGTCTTGCACTTTGCCCAAGTTTG  597

seq1  AGAGATAAATGAAAGCTGTGCCACTGTGAGTTTTTCTGAGAAATCAGGAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAATGAAAGCTGTGCCACTGTGAGTTTTTCTGAGAAATCAGGAA  647

seq1  CAGAAACAAAGCTACCTGGAGCAGACAAACACGAAGCCATTAGACACATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAGCTACCTGGAGCAGACAAACACGAAGCCATTAGACACATC  697

seq1  TTTGTTTTGATTACAGCAATTACCATAGCTCCTGCCAATTTCTCTATTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGATTACAGCAATTACCATAGCTCCTGCCAATTTCTCTATTCA  747

seq1  CCGCTTACTTATTATCTCATTATTTCTCCAGAGAAGCTGGGGTTGGATGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTACTTATTATCTCATTATTTCTCCAGAGAAGCTGGGGTTGGATGT  797

seq1  ATCAAAGCTGACAACACAGTCAGTGTGAAGACATTTGTGCTTTTCACAGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTGACAACACAGTCAGTGTGAAGACATTTGTGCTTTTCACAGG  847

seq1  GTAAGAGTGGGTGGGGTCAGGGGCATGGCATCTATGGTGACTGACTGTCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTGGGTGGGGTCAGGGGCATGGCATCTATGGTGACTGACTGTCT  897

seq1  ACTGCGATGACACGGATGGTGTGTTTATAACTGGGCCCTGGAAATCAGTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGATGACACGGATGGTGTGTTTATAACTGGGCCCTGGAAATCAGTC  947

seq1  ACTGTGGGTGCTCTGTATTGCTTTTCATTTCCCTGAATTC  976
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGTGCTCTGTATTGCTTTTCATTTCCCTGAATTC  987