BAC Information

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BAC

Clone NameB6Ng01-013M09
Chromosome3 (Build37)
Map Location 99,854,509 - 99,855,539
singlet/doubletsinglet
Overlap geneSpag17
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013M09.bB6Ng01-013M09.g
ACCDH848507DH848508
length1,0281,046
definitionDH848507|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M09, 5' end.DH848508|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagcaatcaagcaaacagaacaaagtattccaaacagtgggct
ttcctggcactgtaggagggcaagtggaaagcacagccctgggagctcag
caggtggatgcaggctgggttataaaggagctctactgtactctgctata
atgtgctgcacaaaatttaggcctgagaaatacagaggatctaggagcat
gggagggcctctctgggcagtgacactggatggaggtgcaggaattttgt
gggaggttggaagggtagcaccatcaacagtgtttaaatatggtatagta
ttttagttgtatgtgtatgttgtaaaccattttaatataatagcaatata
atttacttgtaaaaattatagataatttggaaaatacgggaaaaccatag
gtcctatacagaaagatacgtaaatatacctgaaatactatactgcgtgg
agccctatatctcttttcaaaaatggaaattatatgtcctctatttcttc
catgcggtataatgttaaccgttgtctaaatccatatccgggatgtgtga
tggagagcctgcttcggggctggaacctatttcacttcttgcatctctgc
tatattgagccagcaaactatcacttatcaccgctttcgtatgagaagtt
tgtaaaactggaaagtccgattggtatgctagacatcgttgctgtctctt
gccgcataatgactcagcctctcaaggcatgttaaacattttcgaattcg
tcatatcttatctaattgtacctaaccctgaaagatagtatggcgtactc
tcagtacatataagaactataatacatatccatatccgtcatagttgatg
gtccacacaaatgggaagagcaacttcccctgatattcagtttcaactct
ataaaagaagagaagtcctgggacgatcgaacctccgatgggaaaggcgc
tggaggatttttgcccaactacctccttcacaagttaattaattgacgag
cagtgaaggccctgcacaataccttagt
gaattccatgagtgataggactgtcttttgttctaatgaggcaactcttg
gcaaacccttagatggtttcagaatggggtagacgctgcttaccagaaag
atcaaacccaggttagaagctgggaaccttcagccttccccttcccctct
ccacagccttcaaggatgagagaggagctgcagatggatttaataattga
ttgtacttggataatgaaaaatccataaaagtttctaaaccacacagaat
ggaaggttcagcatcattgaatgaatccacattctaggagggtgacacac
aaggacagacccatgaacatgaaaaaacagaacacctctgtacatttgtg
cgtgtgtgtttgtgtgaattggaacctatcaaactttgacacttcttatc
ccaggaactgcagggatagtgcaggaaaagaatcttgaatggtcacagaa
gcacttactacttttataacttgaagttcaaataaaaatatgtgaaaaaa
atcaagcattttcaacaaaggtaaagagtaaacgaccatgagtcaatcac
tcactgccctggggtgtggttatgcaaaaataataagatattaatttccc
ccctcccccaagacttgtcatgtggcaaagctgtgaagacacaaggtttt
tcactgaggcttcagtcaactctgaggttttagctaaatgatcatgtccc
gtgactaggacacactctcagtcacaaggtaattgaggccttgagattga
tctgtgacatttgtcttggattaccttgagagagccttctaatgacaagg
ggatcttgtctttttccatttctttgatctcttttcttggtctgatagct
ccggttttgctagatactttcgttagcaatgagtgagggaaatcagaact
tttttatcattcgcaggagggacttaaccctctgggctagtaggctacct
ttaagggcgctcatgttcagctgcctttgtttagattacataatgactcc
cttgctttctcacgcgcattaccttgagtagtgctgagcctattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99854509_99855539
seq2: B6Ng01-013M09.g_70_1115 (reverse)

seq1  CCAA-AGGCTCAGCACTACTC-AGGTATAGC-TGTGGAGATGCAAGGGAG  47
      |||| |||||||||||||||| |||||  ||  |||   | |||||||||
seq2  CCAATAGGCTCAGCACTACTCAAGGTAATGCGCGTGAGAAAGCAAGGGAG  50

seq1  TGTTTA-GGAATTTTAACAA--GGAGCTGAACCTGAGCG-CCTTTGAGGT  93
      |  ||| | ||| | |||||  | |||||||| |||||| ||||  ||||
seq2  TCATTATGTAATCTAAACAAAGGCAGCTGAACATGAGCGCCCTTAAAGGT  100

seq1  TGCCT-CTAGCCCAGAGGCTT-AGT-CCTCCTGTGATTGCT-AAAAAGTT  139
       |||| |||||||||||| || ||| ||||||| || || | ||||||||
seq2  AGCCTACTAGCCCAGAGGGTTAAGTCCCTCCTGCGAATGATAAAAAAGTT  150

seq1  -TGATTTCCTTCACTTATAGCTAAC-AAAGTATCCAGCAAAA-CAGAGCT  186
       |||||||| ||||| || |||||| |||||||| ||||||| | |||||
seq2  CTGATTTCCCTCACTCATTGCTAACGAAAGTATCTAGCAAAACCGGAGCT  200

seq1  ATCAGACCAAGAAAA-AGAT-AAAGAAAAGGAAAAAGACAAGATCCCCTT  234
      ||||||||||||||| |||| ||||||| |||||||||||||||||||||
seq2  ATCAGACCAAGAAAAGAGATCAAAGAAATGGAAAAAGACAAGATCCCCTT  250

seq1  CGTATTAGAAGGCTCTCTCAAGGTAATCCAAGACAAATGTCACAGATCAA  284
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGAAGGCTCTCTCAAGGTAATCCAAGACAAATGTCACAGATCAA  300

seq1  TCACAAGGCCAAAATTACCTTGTGACTGAGAGTGTGTTCTAGTCACGGGA  334
      || |||||||  ||||||||||||||||||||||||| ||||||||||||
seq2  TCTCAAGGCCTCAATTACCTTGTGACTGAGAGTGTGTCCTAGTCACGGGA  350

seq1  CATGATCATTTTAGCTAAAACCTCAGAGTTGACTGAAGCCTCAGTGAAAA  384
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCA-TTTAGCTAAAACCTCAGAGTTGACTGAAGCCTCAGTGAAAA  399

seq1  ACCTTGTGTCTTCACAGCTTTGCCACATGACAAGTCTTGGGGGAGGGGGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGTCTTCACAGCTTTGCCACATGACAAGTCTTGGGGGAGGGGGG  449

seq1  AAATTAATATCTTATTATTTTTGCATAACCACACCCCAGGGCAGTGAGTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATATCTTATTATTTTTGCATAACCACACCCCAGGGCAGTGAGTG  499

seq1  ATTGACTCATGGTCGTTTACTCTTTACCTTTGTTGAAAATGCTTGATTTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCATGGTCGTTTACTCTTTACCTTTGTTGAAAATGCTTGATTTT  549

seq1  TTTCACATATTTTTATTTGAACTTCAAGTTATAAAAGTAGTAAGTGCTTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATATTTTTATTTGAACTTCAAGTTATAAAAGTAGTAAGTGCTTC  599

seq1  TGTGACCATTCAAGATTCTTTTCCTGCACTATCCCTGCAGTTCCTGGGAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCATTCAAGATTCTTTTCCTGCACTATCCCTGCAGTTCCTGGGAT  649

seq1  AAGAAGTGTCAAAGTTTGATAGGTTCCAATTCACACAAACACACACGCAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGTCAAAGTTTGATAGGTTCCAATTCACACAAACACACACGCAC  699

seq1  AAATGTACAGAGGTGTTCTGTTTTTTCATGTTCATGGGTCTGTCCTTGTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAGAGGTGTTCTGTTTTTTCATGTTCATGGGTCTGTCCTTGTG  749

seq1  TGTCACCCTCCTAGAATGTGGATTCATTCAATGATGCTGAACCTTCCATA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTCACCCTCCTAGAATGTGGATTCATTCAATGATGCTGAACCTTCCATT  799

seq1  CTGTGTGGTTTAGAAACTTTTATGGATTTTTCATTATCCAAGTACAATCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTTTAGAAACTTTTATGGATTTTTCATTATCCAAGTACAATCA  849

seq1  ATTATTAAATCCATCTGCAGCTCCTCTCTCATCCTTGAAGGCTGTGGAGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATCCATCTGCAGCTCCTCTCTCATCCTTGAAGGCTGTGGAGA  899

seq1  GGGGAAGGGGAAGGCTGAAGGTTCCCAGCTTCTAACCTGGGTTTGATCTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGGAAGGCTGAAGGTTCCCAGCTTCTAACCTGGGTTTGATCTT  949

seq1  TCTGGTAAGCAGCGTCTACCCCATTCTGAAACCATCTAAGGGTTTGCCAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAGCAGCGTCTACCCCATTCTGAAACCATCTAAGGGTTTGCCAA  999

seq1  GAGTTGCCTCATTAGAACAAAAGACAGTCCTATCACTCATGGAATTC  1031
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCTCATTAGAACAAAAGACAGTCCTATCACTCATGGAATTC  1046