MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-013P05
Chromosome	3 (Build37)
Map Location	68,721,009 - 68,721,591
singlet/doublet	singlet
Overlap gene	Ift80
Upstream gene	EG208426, EG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik
Downstream gene	Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG208426 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208426 MGI:3644166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG545531 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545531 MGI:3648047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 150 ESTs, 5 Proteins

name	LOC631379 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:631379
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Schip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30953 MGI:1353557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il12a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16159 MGI:96539
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC639530 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:639530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins pseudo : _no_value

name	1110032F04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68725 MGI:1915975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs

name	Ift80 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68259 MGI:1915509
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70099 MGI:1917349
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim59 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66949 MGI:1914199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667272 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Kpna4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16649 MGI:1100848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arl14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71619 MGI:1918869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 52 Proteins

name	Ppm1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242083 MGI:2139740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667309 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667309
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 86 ESTs, 24 Proteins pseudo : _no_value

name	B3galnt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26879 MGI:1349405
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl32-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19952 MGI:98039
definition	note : ribosomal protein L32, pseudogene pseudo : _no_value

name	Nmd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97112 MGI:2140103
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041334 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041334
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	1110032A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66183 MGI:1913433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG208426 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802156 GeneID:208426 MGI:3644166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG208426 transcript_id : NM_177585.3

name	EG545531 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251203 GeneID:545531 MGI:3648047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 150 ESTs, 5 Proteins product : predicted gene, EG545531 transcript_id : XM_619909.4

name	Schip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388399 GeneID:30953 MGI:1353557
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : schwannomin interacting protein 1 transcript_id : NM_013928.3

name	Il12a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680394 GeneID:16159 MGI:96539
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 12a transcript_id : NM_008351.1

name	1110032F04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369641 GeneID:68725 MGI:1915975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs product : RIKEN cDNA 1110032F04 gene transcript_id : XM_485253.3

name	Ift80 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28076906 GeneID:68259 MGI:1915509
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : intraflagellar transport 80 homolog (Chlamydomonas) transcript_id : NM_026641.1

name	Smc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254109 GeneID:70099 MGI:1917349
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : structural maintenance of chromosomes 4 transcript_id : NM_133786.3

name	Trim59 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29648306 GeneID:66949 MGI:1914199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 59 transcript_id : NM_025863.2

name	LOC667272 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251200 GeneID:667272
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC667272 transcript_id : XM_989463.2

name	Kpna4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802657 GeneID:16649 MGI:1100848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : karyopherin (importin) alpha 4 transcript_id : NM_008467.3

name	Arl14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369645 GeneID:71619 MGI:1918869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 52 Proteins product : ADP-ribosylation factor-like 14 transcript_id : XM_130919.5

name	Ppm1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130622 GeneID:242083 MGI:2139740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1 (formerly 2C)-like transcript_id : NM_178726.3

name	B3galnt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803426 GeneID:26879 MGI:1349405
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 transcript_id : NM_020026.3

name	Nmd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130861 GeneID:97112 MGI:2140103
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NMD3 homolog (S. cerevisiae) transcript_id : NM_133787.2

name	1110032A04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526829 GeneID:66183 MGI:1913433
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110032A04 gene transcript_id : NM_133675.1

name	EG208426 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243940 GeneID:208426 MGI:3644166
definition	codon_start : 1 product : hypothetical protein LOC208426 protein_id : NP_808253.1

name	EG545531 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63501063 GeneID:545531 MGI:3648047
definition	codon_start : 1 product : similar to Si:dkey-113g17.2 protein_id : XP_619909.1

name	Schip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18250282 GeneID:30953 MGI:1353557
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : neurofibromatosis 2 interacting protein product : schwannomin interacting protein 1 protein_id : NP_038956.1

name	Il12a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680395 CCDS:CCDS17400.1 GeneID:16159 MGI:96539
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0042163 - interleukin-12 beta subunit binding [Evidence IPI]; GO:0005143 - interleukin-12 receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : interleukin 12a p35 subunit product : interleukin 12a protein_id : NP_032377.1

name	1110032F04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369642 GeneID:68725 MGI:1915975
definition	codon_start : 1 product : hypothetical protein LOC68725 protein_id : XP_485253.3

name	Ift80 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076907 GeneID:68259 MGI:1915509
definition	codon_start : 1 product : WD repeat domain 56 protein_id : NP_080917.1

name	Smc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789347 CCDS:CCDS17401.1 GeneID:70099 MGI:1917349
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000796 - condensin complex [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence ISS]; GO:0007067 - mitosis [Evidence IEA]; GO:0007076 - mitotic chromosome condensation [Evidence ISS] [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : SMC4 structural maintenance of chromosomes 4-like 1 protein_id : NP_598547.1

name	Trim59 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29648307 CCDS:CCDS17402.1 GeneID:66949 MGI:1914199
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : tumor suppressor TSBF1 homolog product : mouse RING finger 1 protein_id : NP_080139.2

name	LOC667272 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251201 GeneID:667272
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994557.2

name	Kpna4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680598 CCDS:CCDS17403.1 GeneID:16649 MGI:1100848
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008565 - protein transporter activity [Evidence IDA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006606 - protein import into nucleus [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : importin product : karyopherin alpha 4 protein_id : NP_032493.1

name	Arl14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20871966 GeneID:71619 MGI:1918869
definition	codon_start : 1 product : ADP-ribosylation factor 7 protein_id : XP_130919.1

name	Ppm1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66392585 CCDS:CCDS17405.1 GeneID:242083 MGI:2139740
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0015071 - protein phosphatase type 2C activity [Evidence IDA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0000165 - MAPKKK cascade [Evidence IPI]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IDA] codon_start : 1 note : protein phosphatase 2C epsilon; PP2C-epsilon; protein phosphatase 2a, catalytic subunit, epsilon isoform product : protein phosphatase 1 (formerly 2C)-like protein_id : NP_848841.2

name	B3galnt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910138 CCDS:CCDS17406.1 GeneID:26879 MGI:1349405
definition	GO_function : GO:0047273 - galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0008499 - UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity [Evidence IDA] GO_process : GO:0009312 - oligosaccharide biosynthesis [Evidence IDA] codon_start : 1 note : Mbrn 1; Brainiac 1; Globoside blood group; UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase III product : UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 protein_id : NP_064410.1

name	Nmd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526940 CCDS:CCDS17407.1 GeneID:97112 MGI:2140103
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0043023 - ribosomal large subunit binding [Evidence ISS] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0000055 - ribosomal large subunit export from nucleus [Evidence ISS] codon_start : 1 product : NMD3 homolog protein_id : NP_598548.1

name	1110032A04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526830 GeneID:66183 MGI:1913433
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : androgen down regulated in mouse prostate product : hypothetical protein LOC66183 protein_id : NP_598436.1

name	LOC631379 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:631379
definition	number : 1 pseudo : _no_value

name	LOC100041334 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041334
definition	number : 1 pseudo : _no_value

name	LOC100041334 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041334
definition	number : 2 pseudo : _no_value

name	LOC639530 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251205 GeneID:639530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : similar to spermine synthase pseudo : _no_value transcript_id : XR_032495.1

name	LOC667309 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251204 GeneID:667309
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 86 ESTs, 24 Proteins product : similar to uracil DNA glycosylase pseudo : _no_value transcript_id : XR_032570.1

clone name	MSMg01-390G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369F24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-460G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432C24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-427K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050E09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-013P05.b
ACC	DH848636
length	759
definition	DH848636\|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P05, 5' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctttgttacttggaattcatttcaccattgaatattaaaaagcac cacaaactaaagggttttttctttctttcttgacttctttctttctgact ttctttctttctttgactctttctttctttctctttctttctctctctct ctctctctctctctctctctctgccctcttgtctcttccttctgagcact gggatcaaacgtgtgtgccatcacatctggctactttataaatactttaa aaataagactttttattttggtatttccctagttttgttgcagttgtgaa cataaactcgtaatacactgcgaaacttagacctaaggagtctaacttac tgctgtgtgaagaataaatgtttcttatgaatttaggaataattttcctg acatgtcttgattttttttttttgttttttgttttttgggttttttgttt gtttgtttgttttttaaagcttttcagcatcactcaaaaatctaactgaa gagacacatcgttgggattcttttttttttaagatttattttatttatat gagtaccctgtagctgtcttcagacacaacagaagagggcataggatcct atttacagatggttgtgacccactatctggttgctgggaatttgaactca ggacctctgaaagagcaatcaatgttcttaaccactgagccatctcccca accccattgggattcttaaataaaatgaaaaatgtgtatgcttgggtagc tgtcacaaa
quality values	Open. Hide. 37 14 19 21 23 23 10 10 11 11 9 8 9 8 11 13 13 9 18 10 10 10 9 9 22 14 12 14 11 10 5 10 17 16 10 19 9 10 13 24 19 12 4 7 10 10 6 13 21 18 18 19 18 12 12 13 13 12 13 18 12 12 12 11 15 13 17 18 18 14 12 11 13 12 9 18 14 8 11 10 23 13 16 12 19 16 11 12 12 12 12 13 19 12 22 18 13 11 15 13 22 19 13 11 12 11 11 10 12 11 13 13 12 22 18 10 13 13 10 12 12 11 14 12 13 12 11 11 13 12 12 12 10 10 13 11 11 14 12 13 12 13 13 13 13 14 12 13 11 12 18 16 12 11 11 12 12 13 19 13 18 18 24 13 19 24 27 15 13 11 13 11 13 18 31 18 23 26 26 36 36 44 49 52 59 52 52 49 52 49 49 49 45 49 59 33 44 49 49 45 59 45 45 59 49 43 31 37 36 39 43 49 59 59 59 59 52 45 45 36 49 49 43 52 52 59 52 52 59 59 44 59 59 59 59 59 41 36 43 36 35 36 36 44 52 52 52 49 49 52 49 52 52 52 45 49 27 59 52 59 61 61 61 61 59 61 61 59 59 59 59 59 59 59 59 59 59 59 59 59 59 52 59 59 61 61 61 52 52 52 49 36 29 59 59 59 52 52 59 59 59 39 52 41 45 49 52 59 59 39 45 59 59 49 45 45 36 43 49 59 41 33 59 59 52 59 52 52 41 18 43 52 52 52 52 52 34 59 59 49 52 59 59 59 59 59 59 59 52 59 59 61 59 61 61 59 59 59 59 61 59 52 61 61 59 59 59 59 59 61 59 59 61 61 61 61 52 52 43 59 52 59 59 59 59 49 59 61 59 59 52 59 59 59 61 59 59 59 59 59 61 59 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 55 55 61 52 52 55 55 61 55 61 55 61 55 55 55 55 61 61 61 55 61 61 61 61 61 61 55 55 55 61 49 55 61 61 55 55 55 61 55 61 61 55 55 38 55 55 55 55 61 61 55 55 49 41 36 32 50 43 55 61 61 43 49 41 24 31 33 49 43 50 50 50 37 50 50 50 50 55 22 37 55 49 55 49 43 55 55 55 55 50 55 61 61 61 61 47 39 61 61 47 61 61 61 50 50 50 53 52 38 43 50 50 61 14 47 52 47 47 52 52 43 52 36 50 25 43 53 47 53 43 61 38 53 52 53 53 43 50 52 27 33 29 39 42 45 38 50 39 53 50 42 35 53 42 40 53 32 50 40 24 12 38 28 17 42 17 38 39 39 22 34 31 9 21 35 42 52 61 52 38 22 34 39 39 28 16 16 33 20 34 27 21 21 21 13 27 33 27 27 34 42 30 24 30 33 31 30 34 22 27 28 38 38 45 38 28 24 38 36 7 31 10 30 36 43 22 36 34 28 17 36 47 17 28 24 30 22 20 32 28 25 7 47 8 32 27 35 27 28 21 21 19 36 50 30 43 20 28 38 45 40 22 19 16 12 19 20 23 28 43 17 45 53 37 38 37 22 24 15 9 8 14 24 27 15 12 20 19 13 20 32 12 28 27 28 10 10 23 8 9 10 10 9 14 23 19 19 20 9 13 10 8 8 11 16 37 17 23 17 31 18 18 32 27 19 15 17 5 12 8 12 14 12 7 8 12 24 15

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_68721009_68721591
seq2: B6Ng01-013P05.b_215_801

seq1  GCCCTCTTGTCTCTTCCTTCTGAGCACTGGGATCAAACGTGTGTGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTGTCTCTTCCTTCTGAGCACTGGGATCAAACGTGTGTGCCATC  50

seq1  ACATCTGGCTACTTTATAAATACTTTAAAAATAAGACTTTTTATTTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGCTACTTTATAAATACTTTAAAAATAAGACTTTTTATTTTGGT  100

seq1  ATTTCCCTAGTTTTGTTGCAGTTGTGAACATAAACTCGTAATACACTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTAGTTTTGTTGCAGTTGTGAACATAAACTCGTAATACACTGCG  150

seq1  AAACTTAGACCTAAGGAGTCTAACTTACTGCTGTGTGAAGAATAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGACCTAAGGAGTCTAACTTACTGCTGTGTGAAGAATAAATGTT  200

seq1  TCTTATGAATTTAGGAATAATTTTCCTGACATGTCTTGATTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGAATTTAGGAATAATTTTCCTGACATGTCTTGATTTTTTTTTTT  250

seq1  TGTTTTTTGTTTTTTGGGTTTTTTGTTTGTTTGTTTGTTTTTTAAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTTTTTTGGGTTTTTTGTTTGTTTGTTTGTTTTTTAAAGCTT  300

seq1  TTCAGCATCACTCAAAAATCTAACTGAAGAGACACATCGTTGGGATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCACTCAAAAATCTAACTGAAGAGACACATCGTTGGGATTCTT  350

seq1  TTTTTTTTAAGATTTATTTTATTTATATGAGTACCCTGTAGCTGTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTTATTTTATTTATATGAGTACCCTGTAGCTGTCTTCA  400

seq1  GACACAACAGAAGAGGGCATAGGATCCTA-TTACAGATGGTTGTGACCCA  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACACAACAGAAGAGGGCATAGGATCCTATTTACAGATGGTTGTGACCCA  450

seq1  CTATCTGGTTGCTGGGAA-TTGAACTCAGGACCTCTGAAAGAGCAATCAA  498
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTATCTGGTTGCTGGGAATTTGAACTCAGGACCTCTGAAAGAGCAATCAA  500

seq1  TGTTCTTAACCACTGAGCCATCTCCCCAACCCCATTGGGATTCTTAAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGTTCTTAACCACTGAGCCATCTCCCCAACCCCATTGGGATTCTTAAATA  550

seq1  AAATG-AAAATGTGTATGC-TGGGTAGCTGTCACAAA  583
      ||||| ||||||||||||| |||||||||||||||||
seq2  AAATGAAAAATGTGTATGCTTGGGTAGCTGTCACAAA  587

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information