BAC Information

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BAC

Clone NameB6Ng01-014B11
Chromosome3 (Build37)
Map Location 82,623,343 - 82,624,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B11.bB6Ng01-014B11.g
ACCDH848734DH848735
length1,1901,186
definitionDH848734|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B11, 5' end.DH848735|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagaccaacctctggtaaatattgagtttccaagtgatcctggg
ctatatatacacgactttgttacaaaataaataaataaataaataaataa
ataaataaataaataaataaataaaataattatacatatttagaattaag
ctgattttgaaatgtaagaacaagtaagtaataaaatacttcaacaataa
ggacctgctcttcttcagtttttatgttcacagccctgagtgaatggata
gataagtgaatgaacagtctagtctacactaaatcctgctgccttttaga
ttagagtttaagaattacttttaaaaaggcagaagcaagagactgaaggg
attttattttgcccttttaggtatggaatgtatttacaactggatcttgc
ttagacgggaaatgccttcacctgtgcagagaccgttttagaatcccata
gaaatggccttgcatgaatcaccaggcttcgcttccacctagactgctgc
agcccaggaagagctgtaagtggtaccagtgagcagaggcatagcttttt
tttgttttgtttttgtttttttggggttttgtttgtttgtttttactgga
attgaacaaccttgtattcctggaattgctagaaaaaaattttttggatt
ggattttattttaaagcaaaagcaagaagaacatcataggcagaggcaga
aagagcagaaatcatgtaagacagacagcggagctggagagaaccagaca
cggcaatcactggaaagtggcttttcataaaaccaagaacagaaggcatt
tagcatatgcaattcactaaaacttcttgttttaagtttccatagctttg
cccatttgtggtcattgatcaatatttatttcaattatatctatttaatg
cttacaatgggccacagtgcaaggctttgggcataccaaagctcataaat
agacaggcagatatttgatacacatatgaaaataaagctcacattgtctt
ctccatttgttatgtactcattaaactatatttcattatattattgcaga
taaccatgttcataacatagattttattttcagctagcaactgatacgtt
atcctataaggggactaatatgaaagcagcacaattttttgacggattac
ctggaatgaaggcctacacattctcttgcagttcttattt
gaattctttggtgtaggtgagtgttagcaatctaaattttatttttttaa
atgtgtgattttaagaaacttgagagcttttctgctgaggtcaggaacaa
ggcaagggggtcaccttgtcactcttcattctctattacacaccaaaaat
tctagacaatataatatgacaggaagggaaagtgaaaattttagaaaaaa
atatatgctcaaaatttaaaaatgtaggcaaataaaactgtaacaagtaa
aacaagcgacataattgtctatgtgagaaatctgatggaatcgacacata
tttctctgacctaataattaatgaaagcaaattctcagtgtaggtggttg
atatacatacactactatatagtggggaaagaggaaggtcagtacagagc
aaaaggaagggaaagatggcaaagtaacagtaaggataaatacagaagga
atcacactaattttagttacataaaattacacacaacacatacatgtcca
cacacacacataccccacatgcattcacaaagtttaagtgaagttagtcc
acttggactgacaatactccccacaagagccattagactgtattgaaaac
cctactactaataccaggaacacctctgtgtagagcgcatgcaggcaata
taggctagtgctgttgcccttggttgtttctcagaggttgaacacaagtc
tgtattgcttggtgaagacttcatttattttggacacaaaatccagagga
catgatctggatccaccgttagcactagctttcatagtacccaagggtgt
tgtgtgagcttccaagggaggggaagaaccaacagtcctagccagcggtg
atgcctatgaaccacaagacggagagcctggcatgcagtagtggcactta
cgtcatggcagtaaccagtagtctccagctgggacttaagggatgctcga
cagatggaaaccaggcttggcactgtaacccagcctttggctggcaagat
catagatctagagaggacccgttactgccacttactaaccagcatagttc
ctaactgcattctaatccttgggcttaagagattgtatcttcatcaagaa
catttcctcttggcgaacaggaccagatcattacaaatccacaccgtgct
tccaacgccatgtagacgaccgacgactgataagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82623343_82624543
seq2: B6Ng01-014B11.b_47_1236

seq1  GAATTCAAGACCAACCTCTGGTAAATATTGAGTTTCCAAGTGATCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAACCTCTGGTAAATATTGAGTTTCCAAGTGATCCTGGG  50

seq1  CTATATATACACGACTTTGTTACAAAATAAATAAATAAATAAATAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATACACGACTTTGTTACAAAATAAATAAATAAATAAATAAATAA  100

seq1  ATAAATAAATAAATAAATAAATAAAATAATTATACATATTTAGAATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATAAAATAATTATACATATTTAGAATTAAG  150

seq1  CTGATTTTGAAATGTAAGAACAAGTAAGTAATAAAATACTTCAACAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTGAAATGTAAGAACAAGTAAGTAATAAAATACTTCAACAATAA  200

seq1  GGACCTGCTCTTCTTCAGTTTTTATGTTCACAGCCCTGAGTGAATGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGCTCTTCTTCAGTTTTTATGTTCACAGCCCTGAGTGAATGGATA  250

seq1  GATAAGTGAATGAACAGTCTAGTCTACACTAAATCCTGCTGCCTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGAATGAACAGTCTAGTCTACACTAAATCCTGCTGCCTTTTAGA  300

seq1  TTAGAGTTTAAGAATTACTTTTAAAAAGGCAGAAGCAAGAGACTGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTAAGAATTACTTTTAAAAAGGCAGAAGCAAGAGACTGAAGGG  350

seq1  ATTTTATTTTGCCCTTTTAGGTATGGAATGTATTTACAACTGGATCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTGCCCTTTTAGGTATGGAATGTATTTACAACTGGATCTTGC  400

seq1  TTAGACGGGAAATGCCTTCACCTGTGCAGAGACCGTTTTAGAATCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACGGGAAATGCCTTCACCTGTGCAGAGACCGTTTTAGAATCCCATA  450

seq1  GAAATGGCCTTGCATGAATCACCAGGCTTCGCTTCCACCTAGACTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCCTTGCATGAATCACCAGGCTTCGCTTCCACCTAGACTGCTGC  500

seq1  AGCCCAGGAAGAGCTGTAAGTGGTACCAGTGAGCAGAGGCATAGCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAGAGCTGTAAGTGGTACCAGTGAGCAGAGGCATAGCTTTTT  550

seq1  TTTGTTTTGTTTTTGTTTTTTTGGGGTTTTGTTTGTTTGTTTTTACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTGTTTTTTTGGGGTTTTGTTTGTTTGTTTTTACTGGA  600

seq1  ATTGAACAACCTTGTATTCCTGGAATTGCTAGAAAAAAATTTTTTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAACCTTGTATTCCTGGAATTGCTAGAAAAAAATTTTTTGGATT  650

seq1  GGATTTTATTTTAAAGCAAAAGCAAGAAGAACATCATAGGCAGAGGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTATTTTAAAGCAAAAGCAAGAAGAACATCATAGGCAGAGGCAGA  700

seq1  AAGAGCAGAAATCATGTAAGACAGACAGCGGAGCTGGAGAGAACCAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGAAATCATGTAAGACAGACAGCGGAGCTGGAGAGAACCAGACA  750

seq1  CGGCAATCACTGGAAAGTGGCTTTTCATAAAACCAAGAACAGAAGGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATCACTGGAAAGTGGCTTTTCATAAAACCAAGAACAGAAGGCATT  800

seq1  TAGCATATGCAATTCACTAAAACTTCTTGTTTTAAGTTTCCATAGCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATGCAATTCACTAAAACTTCTTGTTTTAAGTTTCCATAGCTTTG  850

seq1  CCCATTTGTGGTCATTGATCAATATTTATTTCAATTATATCTATTTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGTGGTCATTGATCAATATTTATTTCAATTATATCTATTTAATG  900

seq1  CTTACAATGGGCCACAGTGCAAGGCTTTGGGCATACCAAAGGCTCATAAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTACAATGGGCCACAGTGCAAGGCTTTGGGCATACCAAA-GCTCATAAA  949

seq1  TAAGACAGGCAGATATTTGATACAACATAATGAAAAATAAAGGCTCACAT  1000
      | ||||||||||||||||||||| |||| ||| |||||||| ||||||||
seq2  T-AGACAGGCAGATATTTGATAC-ACAT-ATG-AAAATAAA-GCTCACAT  994

seq1  TGTCTTCTCCCATTTGTTATGTAACCTCATTAAACTATATTTCATTATA-  1049
      |||||||| ||||||||||||||  |||||||||||||||||||||||| 
seq2  TGTCTTCT-CCATTTGTTATGTA--CTCATTAAACTATATTTCATTATAT  1041

seq1  TATTGCCAGAATATACCATGTTCATAAACATAGATTTTAATTTTCAGCTA  1099
      ||||| ||| ||| ||||||||||| |||||||||||| |||||||||||
seq2  TATTG-CAG-ATA-ACCATGTTCAT-AACATAGATTTT-ATTTTCAGCTA  1086

seq1  GCAACTGATACGTAAT-CTAT-AGGTGACTAATATGAAAAGCAGCACAA-  1146
      ||||||||||||| || |||| ||| |||||||||| |||||||||||| 
seq2  GCAACTGATACGTTATCCTATAAGGGGACTAATATG-AAAGCAGCACAAT  1135

seq1  TTTTTGACTGAGTAACTTGAATGAAGGGCTACACATTCTC-TGCAGTCCC  1195
      |||||||| || || || ||||||||| |||||||||||| ||||||  |
seq2  TTTTTGACGGATTACCTGGAATGAAGGCCTACACATTCTCTTGCAGT-TC  1184

seq1  TTATTT  1201
      ||||||
seq2  TTATTT  1190