BAC Information

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BAC

Clone NameB6Ng01-014I19
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,187 - 41,059,73786,136,918 - 86,138,041
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I19.bB6Ng01-014I19.g
ACCDH849060DH849061
length9741,102
definitionDH849060|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I19, 5' end.DH849061|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(86,136,918 - 86,138,041)
sequence
gaattctttgtttagctctgaaccccattttttaatggagttatttgatt
ttctggagtccaccttcttgagttctttatatatgttgtatattatcccc
tatctcatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcatattgacggtgtcttttgccttacagaagctttgcagtttcat
gaggtcccatttgtcatttcttgatcttatagcacaaaccattgctgttc
tattcaggaatttttctcctgtgcccatatctttcaggtttttccccact
ttctcctctataagtttgactgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttaca
ttcttctacatgataattgccagttgtgacaggaccatttgttgaaaatg
ctgtctcttttccactggatggttttagatcccttgtcaaagatcaagtg
accataggtgtttgggttcatttttgggtcttcaattctattccattggt
ctacttgtctgtcactaaaccagtaccatgcagtgtttatcacaattgct
ctgtagtacagctttaggttaggcatggtgattccaccagaggtttatcc
ttgagaagagtttttgctatcctaggttttttgttattccagatgaattt
gcagattgccctttctaattcattgaagaattgagttggaattttgttgg
ggattgcattgaatctgtagattgcttttggcaagatagccattttacta
tattgaacctgccaatccatgagcatgggagatcttttcatcttctgaga
tctttaatttctttcttcagagacttgaagttctttacatacatttcact
tccttagttagagtcacaccaagtattttatattatttttgactattcag
aaggtgttgttttctaatttcttt
gaattcatgagcagcttttaccttaagattattgatagcatccaatttct
ggatatcaaacagcctcctactagatcgtggcaggtcaccaaataccagt
ttaatcaaggaaggaagaatgaaaaggaacagaaaatacataaaatgaat
ggtaagtactaagaataattgcagaaatgacatcacgaggtgcttacacc
aaagaagcaggccttggctcctctcagtactcatactggggcccacaaga
ggccattgcctcacactctgaaacacaatactcccagcaggtttttcttc
tttgtcattaggggttccaggcatcttgagcataatgtggggtatcacca
acacagaatgagatccttcctgtttagttgactgcaagtctgctttgcct
tccgatggttattgccaatatgtgtatgtcactattgtacattttttact
ctctttgtcatgctgaacagtgttgtggatcatagatgtcacagctatat
cagactattgattgcttctgttcttaggaacttaaagagaatttctagta
gtattgaaactagaccagaaaagaaaggttttagaataataggtgaagct
tatcctgcatcccaagtgtgtgatgtcctcattagcagtgccttacctcc
aacctcttagaggcagtaaagaggaacagcagtagtctctatttttactt
tttttggaatttttggtggacaaccataatcaaaaggacatttctcatgc
ttagaactaggagttttattagtaaacagttcttatggggaccattgtca
gaaaggaggaaatattatattttttcaaaaatgtaggtaagtataaaata
atatggttttttgagtttaatcagaaaacccttgtagctattatttgact
atcctcatccttcccatctgtatatcatgaccatattatttgttattatt
gtataaacatatgatatctctgctgattaataaacacaagttcttttata
ctctaaacctgtccttcctcctcaggttgaagaaggaaatgctactgaaa
ctgtacagttgttactggattcattcttttagaactgacagatcgtgcga
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-014I19.b_47_597 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| || ||| ||| ||| |||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAAAAATGAACCCAAACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| ||||||||| ||||||||||||||||||||| ||||
seq2  GTCACTTGATCTTTGACAAGGGATCTAAAACCATCCAGTGGAAAAGAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||| ||| |||||||||   ||||||||||||||
seq2  AGCATTTTCAACAAATGGTCCTGTCACAACTGGCAATTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      ||||  |||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGTAAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||||||||||| ||||||||||||||||||| | |||||||||||||||
seq2  GGATCAAGGAACTCCACATAAAACCAGAGACAGTCAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||||||||||| |||  ||||||||| |||||| |||||||||||| |
seq2  AAAGTGGGGAAAAACCTGAAAGATATGGGCACAGGAGAAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||||||||||| ||||||| ||||||  ||||  |||||||||||||
seq2  TAGAACAGCAATGGTTTGTGCTATAAGATCAAGAAATGACAAATGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TCATGAAACTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATATGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATGAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||| |||||| ||| |||||| ||||||||||||||||||| ||||
seq2  TAGGGGA-TAATATACAACATATATAAAGAACTCAAGAAGGTGGACTCCA  499

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GAAAATCAAATAACTCCATTAAAAAATGGGGTTCAGAGCTAAACAAAGAA  549

seq1  TT  551
      ||
seq2  TT  551

seq1: chr2_86136918_86138041
seq2: B6Ng01-014I19.g_68_1169

seq1  GAATTCATGAGCAGCTTTTACCTTAAGATTATTGATAGCATCCAATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGCAGCTTTTACCTTAAGATTATTGATAGCATCCAATTTCT  50

seq1  GGATATCAAACAGCCTCCTACTAGATCGTGGCAGGTCACCAAATACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCAAACAGCCTCCTACTAGATCGTGGCAGGTCACCAAATACCAGT  100

seq1  TTAATCAAGGAAGGAAGAATGAAAAGGAACAGAAAATACATAAAATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAGGAAGGAAGAATGAAAAGGAACAGAAAATACATAAAATGAAT  150

seq1  GGTAAGTACTAAGAATAATTGCAGAAATGACATCACGAGGTGCTTACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTACTAAGAATAATTGCAGAAATGACATCACGAGGTGCTTACACC  200

seq1  AAAGAAGCAGGCCTTGGCTCCTCTCAGTACTCATACTGGGGCCCACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCAGGCCTTGGCTCCTCTCAGTACTCATACTGGGGCCCACAAGA  250

seq1  GGCCATTGCCTCACACTCTGAAACACAATACTCCCAGCAGGTTTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGCCTCACACTCTGAAACACAATACTCCCAGCAGGTTTTTCTTC  300

seq1  TTTGTCATTAGGGGTTCCAGGCATCTTGAGCATAATGTGGGGTATCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTAGGGGTTCCAGGCATCTTGAGCATAATGTGGGGTATCACCA  350

seq1  ACACAGAATGAGATCCTTCCTGTTTAGTTGACTGCAAGTCTGCTTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATGAGATCCTTCCTGTTTAGTTGACTGCAAGTCTGCTTTGCCT  400

seq1  TCCGATGGTTATTGCCAATATGTGTATGTCACTATTGTACATTTTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGGTTATTGCCAATATGTGTATGTCACTATTGTACATTTTTTACT  450

seq1  CTCTTTGTCATGCTGAACAGTGTTGTGGATCATAGATGTCACAGCTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTCATGCTGAACAGTGTTGTGGATCATAGATGTCACAGCTATAT  500

seq1  CAGACTATTGATTGCTTCTGTTCTTAGGAACTTAAAGAGAATTTCTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATTGATTGCTTCTGTTCTTAGGAACTTAAAGAGAATTTCTAGTA  550

seq1  GTATTGAAACTAGACCAGAAAAGAAAGGTTTTAGAATAATAGGTGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAACTAGACCAGAAAAGAAAGGTTTTAGAATAATAGGTGAAGCT  600

seq1  TATCCTGCATCCCAAGTGTGTGATGTCCTCATTAGCAGTGCCTTACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGCATCCCAAGTGTGTGATGTCCTCATTAGCAGTGCCTTACCTCC  650

seq1  AACCTCTTAGAGGCAGTAAAGAGGAACAGCAGTAGTCTCTATTTTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTAGAGGCAGTAAAGAGGAACAGCAGTAGTCTCTATTTTTACTT  700

seq1  TTTTTGGAATTTTTGGTGGACAACCATAATCAAAAGGACATTTCTCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAATTTTTGGTGGACAACCATAATCAAAAGGACATTTCTCATGC  750

seq1  TTAGAACTAGGAGTTTTATTAGTAAACAGTTCTTATGGGGACCATTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTAGGAGTTTTATTAGTAAACAGTTCTTATGGGGACCATTGTCA  800

seq1  GAAAGGAGGAAATATTATA-TTTTTCAAAAATGTAGGTAAGTATAAAATA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAGGAGGAAATATTATATTTTTTCAAAAATGTAGGTAAGTATAAAATA  850

seq1  ATATGGTTTCTTGAGGTTTAATCAGAAAA-CCTTGTAGCTATTATTTGAC  898
      ||||||||| |||| |||||||||||||| ||||||||||||||||||||
seq2  ATATGGTTTTTTGA-GTTTAATCAGAAAACCCTTGTAGCTATTATTTGAC  899

seq1  TATCCTCCATCCTTCCCATTCTGTATATCAATGAACCAATATTTATTTGT  948
      |||||| ||||||||||| |||||||||| ||||  | ||| ||||||||
seq2  TATCCT-CATCCTTCCCA-TCTGTATATC-ATGA--CCATA-TTATTTGT  943

seq1  TATTTATTTGTATTAAAACATATGATATCTCTGCTTGAATTTAATAAACA  998
      ||||   ||||||  ||||||||||||||||||| |||  ||||||||||
seq2  TATT--ATTGTAT--AAACATATGATATCTCTGC-TGA--TTAATAAACA  986

seq1  CCAAGTTCTTTTTATACTCTAAACCCTTGTCTTTCCCTCCTCAGGTTTGA  1048
       ||||||| ||||||||||||||||  |||| || ||||||||||||   
seq2  -CAAGTTC-TTTTATACTCTAAACC--TGTCCTT-CCTCCTCAGGTT--G  1029

seq1  AAGAAGGGAATGGCTACTGAGAACTGTACAGTTGTTACTGAGTTCATTCT  1098
      ||||||| ||| |||||||| |||||||||||||||||||  ||||||||
seq2  AAGAAGGAAAT-GCTACTGA-AACTGTACAGTTGTTACTGGATTCATTCT  1077

seq1  TTTAGGACTGACTGATCGTGCTGAAT  1124
      ||||| |||||| |||||||| ||||
seq2  TTTAGAACTGACAGATCGTGC-GAAT  1102