BAC Information

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BAC

Clone NameB6Ng01-014L11
Chromosome3 (Build37)
Map Location 49,026,715 - 49,137,194
singlet/doubletdoublet
Overlap gene4932443G14
Upstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014L11.bB6Ng01-014L11.g
ACCDH849179DH849180
length1,0301,128
definitionDH849179|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L11, 5' end.DH849180|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,136,157 - 49,137,194)(49,026,715 - 49,027,872)
sequence
gaattcaacaaatcatgtgttgaaagaagttgctgactacaagcttctca
atggtcacaaatagacatagcttgatcattttctgattgaagaatgtcca
gaatgcctatattatgaatgtgtgtgtgtgtacacttcattgtagaccct
gtgctcattccaattgttggctgagagcatccacctctatatctatcagg
cactggcagagcctctcagcagacagctatatcagactcctgtcagtaaa
cacttgttaaaattttgtattttacttaattatatttagtaatcattctg
aaataaataatatagaaatattgtctgattgaataaaattcattttccat
tgaccttctatgaatactaggtggtcacatcagctcactataatgactcc
tgtagtaaacatacaaagctcctctcatacaagtatccaaaaagatgatt
atttataccaataatttaaacaaataactgaaatatatcttcctatcaag
cattttgatcttatcaaaagtgtttataagaaacaatcatcttggaagca
ttactttcctcctttcatcattccttctttgtggagcctatcctttgaga
aattcacatgcatatacgatatgttctgattaacttttcgttgctcactc
ctttccattctatctttaacagtatccttctcagatttatgactcttctt
tttttatgatagactgaatattataagtgtgtgtgtgcatgtgtgtgtgt
gtgtgtgtgtgtgtgtgcgtgcgtgtgcatgaacttgggtgtgtaactct
gcatcggacactcttaagctaatatgttgatccaaactgataacttacta
actcttgcctctctagattcaggtgacataggtgaaaagtattaaccctt
gattcaaaaatcttatatgttggtctttctaacttcagtgggtggacatt
tgaaaatgatacaacatgaaggtttccattgctatctatggtacatggta
caatcaaagacaaacttttatgtaacatta
gaattcaaagaacatagacactcaaaattaatgcaatatatctatattta
attaacacaaaatttaaaaggtatatttgtatatgattatatatttgtat
atgtgttcaaactagaagtataagattatcagaacttgttgaatatatca
ttagcattcttctgattgtggagatgtgtttataaatgttaaataagcaa
tagaaagagaatacggagattgatttcatcgaacacatagaagttgctaa
ttatttgagaaatgtctgattgcctaattttttacacatgatgcaatgtg
ccctatagcagattatttcatgaatgagtttcgcaaagaaaataattcct
tgcttttagacgtttcaaagctaaaagaatacactacaatgccaagaagt
aatagagtactgtgaggttacacacaaacaaaaagcagttctgtgatgga
gtcaccatcagagagacagtgaggcaaggaaggccatgaactttgcagtc
tcacacaactgcctttacatgccacttccattcctctcatctatatatcc
atagacaaattgagttaccttttgaggctggaatttctgtttggcaaagt
aagaaaaaaatataatcagttatagagttactgtgcgactaagagggatt
gcaaatttaagtggtgagtcctggcctatttgatttattgcttttctttt
ttaaatagatatgaattattgattaactttcatggctataatctatttga
caaatagactactccttcatgaatagctagacattggaacatatgaaaca
aaagtgtacactgtgtatttcagaagataatattgtgtgctccatgttgg
aaacagaaccttctggcactggccccaataatatgtccctctcctgcagc
aggtggccatctaagcagcaacgaaaggaccttcatgatgccatatacat
catatgaaactcctatatcagtcaagtctcagaatataaatagcctcata
ttcatgatgcttattgcatatccctcaaacaatacaaatttagaaaaaca
ttactaatgacacttggcttccatggatatgagaatgcatcgaactgaat
tcaccttctagtactcctgaagctacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49136157_49137194
seq2: B6Ng01-014L11.b_41_1069 (reverse)

seq1  AATGTTACATAATATGTTTGTCTTTTGATTGTTACATGTTACATTAGATA  50
      |||||||||||| | ||||||| |||||||||  |||| |||  ||||||
seq2  AATGTTACATAA-AAGTTTGTC-TTTGATTGTACCATG-TACCATAGATA  47

seq1  GCATGGGAAACCTTTCTATGTTGTATCATGTTTCAAAATTGT-CACACAC  99
      |||  |||||||||   |||||||||||| |||||||  ||| ||| |||
seq2  GCAATGGAAACCTT--CATGTTGTATCAT-TTTCAAA--TGTCCACCCAC  92

seq1  TTGAAGTTTAGAAAGACATACATATAGGATTTTTGAATC-AGGGTTTATA  148
       ||||| ||||||||||  ||||||| |||||||||||| |||||| |||
seq2  -TGAAG-TTAGAAAGACCAACATATAAGATTTTTGAATCAAGGGTTAATA  140

seq1  CTTTTCACCTATTGTCTCCTGAATCTGAGAGAGGC-AGAGTTAGT-AGTT  196
      ||||||||||| |||| ||||||||| |||||||| ||||||||| ||||
seq2  CTTTTCACCTA-TGTCACCTGAATCT-AGAGAGGCAAGAGTTAGTAAGTT  188

seq1  ATCAGTTTTGGATCAACATATTAGCTTAAGAGTGTCCGATGCAGAGTTAC  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAG-TTTGGATCAACATATTAGCTTAAGAGTGTCCGATGCAGAGTTAC  237

seq1  ACACCCAAGTTCATGCACACGCACGCACACACACACACACACACACACAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAGTTCATGCACACGCACGCACACACACACACACACACACACAC  287

seq1  ACATGCACACACACACTTATAATATTCAGTCTATCATAAAAAAAGAAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACACACACTTATAATATTCAGTCTATCATAAAAAAAGAAGAG  337

seq1  TCATAAATCTGAGAAGGATACTGTTAAAGATAGAATGGAAAGGAGTGAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATCTGAGAAGGATACTGTTAAAGATAGAATGGAAAGGAGTGAGC  387

seq1  AACGAAAAGTTAATCAGAACATATCGTATATGCATGTGAATTTCTCAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAAGTTAATCAGAACATATCGTATATGCATGTGAATTTCTCAAAG  437

seq1  GATAGGCTCCACAAAGAAGGAATGATGAAAGGAGGAAAGTAATGCTTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTCCACAAAGAAGGAATGATGAAAGGAGGAAAGTAATGCTTCCA  487

seq1  AGATGATTGTTTCTTATAAACACTTTTGATAAGATCAAAATGCTTGATAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTGTTTCTTATAAACACTTTTGATAAGATCAAAATGCTTGATAG  537

seq1  GAAGATATATTTCAGTTATTTGTTTAAATTATTGGTATAAATAATCATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATATTTCAGTTATTTGTTTAAATTATTGGTATAAATAATCATCT  587

seq1  TTTTGGATACTTGTATGAGAGGAGCTTTGTATGTTTACTACAGGAGTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATACTTGTATGAGAGGAGCTTTGTATGTTTACTACAGGAGTCAT  637

seq1  TATAGTGAGCTGATGTGACCACCTAGTATTCATAGAAGGTCAATGGAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAGCTGATGTGACCACCTAGTATTCATAGAAGGTCAATGGAAAA  687

seq1  TGAATTTTATTCAATCAGACAATATTTCTATATTATTTATTTCAGAATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTATTCAATCAGACAATATTTCTATATTATTTATTTCAGAATGA  737

seq1  TTACTAAATATAATTAAGTAAAATACAAAATTTTAACAAGTGTTTACTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATATAATTAAGTAAAATACAAAATTTTAACAAGTGTTTACTGA  787

seq1  CAGGAGTCTGATATAGCTGTCTGCTGAGAGGCTCTGCCAGTGCCTGATAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCTGATATAGCTGTCTGCTGAGAGGCTCTGCCAGTGCCTGATAG  837

seq1  ATATAGAGGTGGATGCTCTCAGCCAACAATTGGAATGAGCACAGGGTCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGGTGGATGCTCTCAGCCAACAATTGGAATGAGCACAGGGTCTA  887

seq1  CAATGAAGTGTACACACACACACATTCATAATATAGGCATTCTGGACATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGTGTACACACACACACATTCATAATATAGGCATTCTGGACATT  937

seq1  CTTCAATCAGAAAATGATCAAGCTATGTCTATTTGTGACCATTGAGAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCAGAAAATGATCAAGCTATGTCTATTTGTGACCATTGAGAAGC  987

seq1  TTGTAGTCAGCAACTTCTTTCAACACATGATTTGTTGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCAGCAACTTCTTTCAACACATGATTTGTTGAATTC  1029

seq1: chr3_49026715_49027872
seq2: B6Ng01-014L11.g_65_1192

seq1  GAATTCAAAGAACATAGACACTCAAAATTAATGCAATATATCTATATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACATAGACACTCAAAATTAATGCAATATATCTATATTTA  50

seq1  ATTAACACAAAATTTAAAAGGTATATTTGTATATGATTATATATTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACAAAATTTAAAAGGTATATTTGTATATGATTATATATTTGTAT  100

seq1  ATGTGTTCAAACTAGAAGTATAAGATTATCAGAACTTGTTGAATATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCAAACTAGAAGTATAAGATTATCAGAACTTGTTGAATATATCA  150

seq1  TTAGCATTCTTCTGATTGTGGAGATGTGTTTATAAATGTTAAATAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTCTTCTGATTGTGGAGATGTGTTTATAAATGTTAAATAAGCAA  200

seq1  TAGAAAGAGAATACGGAGATTGATTTCATCGAACACATAGAAGTTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAGAATACGGAGATTGATTTCATCGAACACATAGAAGTTGCTAA  250

seq1  TTATTTGAGAAATGTCTGATTGCCTAATTTTTTACACATGATGCAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGAAATGTCTGATTGCCTAATTTTTTACACATGATGCAATGTG  300

seq1  CCCTATAGCAGATTATTTCATGAATGAGTTTCGCAAAGAAAATAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGCAGATTATTTCATGAATGAGTTTCGCAAAGAAAATAATTCCT  350

seq1  TGCTTTTAGACGTTTCAAAGCTAAAAGAATACACTACAATGCCAAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGACGTTTCAAAGCTAAAAGAATACACTACAATGCCAAGAAGT  400

seq1  AATAGAGTACTGTGAGGTTACACACAAACAAAAAGCAGTTCTGTGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTACTGTGAGGTTACACACAAACAAAAAGCAGTTCTGTGATGGA  450

seq1  GTCACCATCAGAGAGACAGTGAGGCAAGGAAGGCCATGAACTTTGCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATCAGAGAGACAGTGAGGCAAGGAAGGCCATGAACTTTGCAGTC  500

seq1  TCACACAACTGCCTTTACATGCCACTTCCATTCCTCTCATCTATATATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAACTGCCTTTACATGCCACTTCCATTCCTCTCATCTATATATCC  550

seq1  ATAGACAAATTGAGTTACCTTTTGAGGCTGGAATTTCTGTTTGGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAATTGAGTTACCTTTTGAGGCTGGAATTTCTGTTTGGCAAAGT  600

seq1  AAGAAAAAAATATAATCAGTTATAGAGTTACTGTGCGACTAAGAGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAATATAATCAGTTATAGAGTTACTGTGCGACTAAGAGGGATT  650

seq1  GCAAATTTAAGTGGTGAGTCCTGGCCTATTTGATTTATTGCTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTAAGTGGTGAGTCCTGGCCTATTTGATTTATTGCTTTTCTTTT  700

seq1  TTAAATAGATATGAATTATTGATTAACTTTCATGGCTATAATCTATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGATATGAATTATTGATTAACTTTCATGGCTATAATCTATTTGA  750

seq1  CAAATAGACTACTCCTTCATGAATAGCTAGACATTGGAACATATGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGACTACTCCTTCATGAATAGCTAGACATTGGAACATATGAAACA  800

seq1  AAAGTGTACACTGTGTATTTCAGAAGATAATATTGTGTGCTCCATGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTACACTGTGTATTTCAGAAGATAATATTGTGTGCTCCATGTTGG  850

seq1  AAACAGAACCTTCTGGCACTGGCCCCAATAATATGTCCCTCTCCTGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACCTTCTGGCACTGGCCCCAATAATATGTCCCTCTCCTGCAGC  900

seq1  AGGGTGGCCATCTAAGCAGCAACGAAAGGACCTTCATGATGCCATATACA  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGTGGCCATCTAAGCAGCAACGAAAGGACCTTCATGATGCCATATACA  949

seq1  TCATTAATGAAAACTCCTAATATCAAGTCAAGTCTTCAGGAATATAAAAT  1000
      ||||  ||| |||||||| ||||| ||||||||| ||| |||||||||  
seq2  TCAT--ATG-AAACTCCT-ATATC-AGTCAAGTC-TCA-GAATATAAA--  990

seq1  TAGCCCTCATTATTCATGATGGCTGTATTTGCATATTCACTCATACAATA  1050
      ||| ||||| |||||||||| ||| || ||||||| || |||| ||||| 
seq2  TAG-CCTCA-TATTCATGAT-GCT-TA-TTGCATA-TCCCTCAAACAAT-  1033

seq1  ACAAATTTAGAAAAAACATTTACTAATGACACTTTGGGGCTATCCATGGT  1100
      |||||||||| ||||||| |||||||||||||||   |||| ||||||| 
seq2  ACAAATTTAG-AAAAACA-TTACTAATGACACTT---GGCT-TCCATGGA  1077

seq1  TATGAGAAATGCATCGAAACTTGTATTCACCTTTCCTAGTTACTCCTAGA  1150
      |||||| |||||||||||   || |||||||||  |||| ||||||| ||
seq2  TATGAG-AATGCATCGAA--CTGAATTCACCTT--CTAG-TACTCCT-GA  1120

seq1  TGCTACCT  1158
       |||||||
seq2  AGCTACCT  1128