BAC Information

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BAC

Clone NameB6Ng01-015A24
Chromosome3 (Build37)
Map Location 44,966,474 - 45,075,120
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676484
Downstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015A24.bB6Ng01-015A24.g
ACCDH849427DH849428
length9051,136
definitionDH849427|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A24, 5' end.DH849428|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,966,474 - 44,967,297)(45,073,979 - 45,075,120)
sequence
gaattccatctattgtaaagtagaaacttttaagttaaatcatttgttga
tcaggaccaagggaggaaaatcctggccttcataatagatattaaataat
ttctgaagatatcatgctgtgacaacagaggctcttctgctgaaataagc
acagaggcaataactcttctctcaagagttattaacaaggtcctggaagt
ccacaaaaatgcctataataaaaccaatatacattcacatggcataaata
aaattatctttgttcatagatgacataatagtcctcataaaattttttgg
gaaaaaaagcttatcaaaataaaagaaaacgcccaatccaatcgcgcgga
acctgagactgcagtacatagggaagcaggctacccgggcctgatctggg
gcacaagtcccttccgctcgactcgagccccgggctaccttgccagcaga
gacttgcccaacacccgcaagggcccacacaggattccacacaagatcct
aagacctctagtgagtggaacacaacttctgccaggagtctggttcaaac
accagatatctgggtacctgccctgcaagaagagagcttgcctgcagaaa
atactctgcccactgaaactaaggagagggctaccctccaggtctgcttt
tagaggctaacagagtcacctgaagaacaagctcttaacagtgacaacta
aaacagctagcttcagagattaccagatggcgaaaggcaaacgtaagaat
cctactaacagaaatcaagaccactcaccatcatcagaactcagcactcc
caccccacctagtcctgggcacccacacaaccgaaaatctagacccagat
ttaaaaacatttctcatgatgatgatagaggacatcagaagactttcata
gtcac
gaattcatctgtcacagagaaccattgaggattagagcagtgtgcagtac
ctagctttacatgggtttggggatttaaatgaagcacccccagccttgtg
ctttacccaagtgtgtcagatttccacctaacattttattttaagcaaaa
actgccgtgatcacgactgttgtcaatattttcatggaaggaataacgac
acagtaactgtaaacatagtagaataaaatattgacgaatgtttgattaa
gaggctcttttagagcctctggtgtgatatggctctttctcctaaaaagt
agagtaaacctgcttcaggactctgcaaaatcccattggtgttgtacaga
ggctcacacactacaggggtaaatctcagatagagtttacactttatgat
atttgaatataatggtggatattttttctgtgattcatcagtaatgtctt
aaaagtatcatttggatattagttctactcttatttttctccatctataa
atctgatacattttgcatttcaggttattttttcctgttacttttaaact
ttgttacatatgagatcaactatcttaggaatgtttcattcaacctagaa
ggcagtagctctcaccttgtagttgcaacttctttggggttgaatgaccc
tttcacagttgtcacctaagaacatcagaaaacatagatatttacattat
gactcattaaagtagcaatacttaagttatgaaaaagcaatgaagaattt
tatggttagaggtcaccaggacacgaggaactaaagggtcacagcaataa
ggagattgagaaccactggtattagctgaatctgtcttcatttgcagtct
gctacgtcttgagtattttcttccccaagggataggataagaatttccct
cagaataaaaatgaatgtgctgtaatactcgacctcatttctattttcca
aatcctatgaatcagagccttatgcagaggggtcatgttgtttgcaaatg
taccgatgatgcagaccatcctacatcagtgttattctgcattttgacag
tggtgcactgtaacttatttttaataaatatatacaggtcataagtatac
ttatccgtggatacctaactcaagtttgttaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44966474_44967297
seq2: B6Ng01-015A24.b_30_853

seq1  GAATTCCATCTATTGTAAAGTAGAAACTTTTAAGTTAAATCATTTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTATTGTAAAGTAGAAACTTTTAAGTTAAATCATTTGTTGA  50

seq1  TCAGGACCAAGGGAGGAAAATCCTGGCCTTCATAATAGATATTAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCAAGGGAGGAAAATCCTGGCCTTCATAATAGATATTAAATAAT  100

seq1  TTCTGAAGATATCATGCTGTGACAACAGAGGCTCTTCTGCTGAAATAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGATATCATGCTGTGACAACAGAGGCTCTTCTGCTGAAATAAGC  150

seq1  ACAGAGGCAATAACTCTTCTCTCAAGAGTTATTAACAAGGTCCTGGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAATAACTCTTCTCTCAAGAGTTATTAACAAGGTCCTGGAAGT  200

seq1  CCACAAAAATGCCTATAATAAAACCAATATACATTCACATGGCATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAATGCCTATAATAAAACCAATATACATTCACATGGCATAAATA  250

seq1  AAATTATCTTTGTTCATAGATGACATAATAGTCCTCATAAAATTTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTTTGTTCATAGATGACATAATAGTCCTCATAAAATTTTTTGG  300

seq1  GAAAAAAAGCTTATCAAAATAAAAGAAAACGCCCAATCCAATCGCGCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGCTTATCAAAATAAAAGAAAACGCCCAATCCAATCGCGCGGA  350

seq1  ACCTGAGACTGCAGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGACTGCAGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGG  400

seq1  GCACAAGTCCCTTCCGCTCGACTCGAGCCCCGGGCTACCTTGCCAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTCCCTTCCGCTCGACTCGAGCCCCGGGCTACCTTGCCAGCAGA  450

seq1  GACTTGCCCAACACCCGCAAGGGCCCACACAGGATTCCACACAAGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCCAACACCCGCAAGGGCCCACACAGGATTCCACACAAGATCCT  500

seq1  AAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGGTTCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGGTTCAAAC  550

seq1  ACCAGATATCTGGGTACCTGCCCTGCAAGAAGAGAGCTTGCCTGCAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATATCTGGGTACCTGCCCTGCAAGAAGAGAGCTTGCCTGCAGAAA  600

seq1  ATACTCTGCCCACTGAAACTAAGGAGAGGGCTACCCTCCAGGTCTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGCCCACTGAAACTAAGGAGAGGGCTACCCTCCAGGTCTGCTTT  650

seq1  TAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTTAACAGTGACAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTTAACAGTGACAACTA  700

seq1  AAACAGCTAGCTTCAGAGATTACCAGATGGCGAAAGGCAAACGTAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTAGCTTCAGAGATTACCAGATGGCGAAAGGCAAACGTAAGAAT  750

seq1  CCTACTAACAGAAATCAAGACCACTCACCATCATCAGAACTCAGCACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAACAGAAATCAAGACCACTCACCATCATCAGAACTCAGCACTCC  800

seq1  CACCCCACCTAGTCCTGGGCACCC  824
      ||||||||||||||||||||||||
seq2  CACCCCACCTAGTCCTGGGCACCC  824

seq1: chr3_45073979_45075120
seq2: B6Ng01-015A24.g_68_1203 (reverse)

seq1  CTTATTAACAAAATTTGAAGTTTAGGTAT-CACGGATAAGTATTACTTAT  49
      ||||||||| ||| ||||   |||||||| |||||||||||| |||||||
seq2  CTTATTAAC-AAACTTGA--GTTAGGTATCCACGGATAAGTA-TACTTAT  46

seq1  GAACTGTATATTATTATT-AAAATAAGTTACAAGTGGCACAACTTGTCAA  98
      || ||||||||  ||||| |||||||||||| ||| |||| || ||||||
seq2  GACCTGTATATATTTATTAAAAATAAGTTAC-AGT-GCACCAC-TGTCAA  93

seq1  AATGCAG-ATAACACTTGATGGTAGGATGGTCTGCATCATCGGTACATTT  147
      ||||||| ||||||| |||| |||||||||||||||||||||||||||||
seq2  AATGCAGAATAACAC-TGAT-GTAGGATGGTCTGCATCATCGGTACATTT  141

seq1  GCATACAACATGACCCCTCTGCATAAGGCTCTGATTCATAGGATTTGGAA  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAACATGACCCCTCTGCATAAGGCTCTGATTCATAGGATTTGGAA  191

seq1  AATAGAAATGAGGTCGAGTATTACAGCACATTCATTTTTATTCTGAGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATGAGGTCGAGTATTACAGCACATTCATTTTTATTCTGAGGGA  241

seq1  AATTCTTATCCTATCCCTTGGGGAAGAAAATACTCAAGACGTAGCAGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATCCTATCCCTTGGGGAAGAAAATACTCAAGACGTAGCAGACT  291

seq1  GCAAATGAAGACAGATTCAGCTAATACCAGTGGTTCTCAATCTCCTTATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAGACAGATTCAGCTAATACCAGTGGTTCTCAATCTCCTTATT  341

seq1  GCTGTGACCCTTTAGTTCCTCGTGTCCTGGTGACCTCTAACCATAAAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACCCTTTAGTTCCTCGTGTCCTGGTGACCTCTAACCATAAAATT  391

seq1  CTTCATTGCTTTTTCATAACTTAAGTATTGCTACTTTAATGAGTCATAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGCTTTTTCATAACTTAAGTATTGCTACTTTAATGAGTCATAAT  441

seq1  GTAAATATCTATGTTTTCTGATGTTCTTAGGTGACAACTGTGAAAGGGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATCTATGTTTTCTGATGTTCTTAGGTGACAACTGTGAAAGGGTC  491

seq1  ATTCAACCCCAAAGAAGTTGCAACTACAAGGTGAGAGCTACTGCCTTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCCCAAAGAAGTTGCAACTACAAGGTGAGAGCTACTGCCTTCTA  541

seq1  GGTTGAATGAAACATTCCTAAGATAGTTGATCTCATATGTAACAAAGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATGAAACATTCCTAAGATAGTTGATCTCATATGTAACAAAGTTT  591

seq1  AAAAGTAACAGGAAAAAATAACCTGAAATGCAAAATGTATCAGATTTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACAGGAAAAAATAACCTGAAATGCAAAATGTATCAGATTTATA  641

seq1  GATGGAGAAAAATAAGAGTAGAACTAATATCCAAATGATACTTTTAAGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAAAAATAAGAGTAGAACTAATATCCAAATGATACTTTTAAGAC  691

seq1  ATTACTGATGAATCACAGAAAAAATATCCACCATTATATTCAAATATCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATGAATCACAGAAAAAATATCCACCATTATATTCAAATATCAT  741

seq1  AAAGTGTAAACTCTATCTGAGATTTACCCCTGTAGTGTGTGAGCCTCTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAAACTCTATCTGAGATTTACCCCTGTAGTGTGTGAGCCTCTGT  791

seq1  ACAACACCAATGGGATTTTGCAGAGTCCTGAAGCAGGTTTACTCTACTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCAATGGGATTTTGCAGAGTCCTGAAGCAGGTTTACTCTACTTT  841

seq1  TTAGGAGAAAGAGCCATATCACACCAGAGGCTCTAAAAGAGCCTCTTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAAAGAGCCATATCACACCAGAGGCTCTAAAAGAGCCTCTTAAT  891

seq1  CAAACATTCGTCAATATTTTATTCTACTATGTTTACAGTTACTGTGTCGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTCGTCAATATTTTATTCTACTATGTTTACAGTTACTGTGTCGT  941

seq1  TATTCCTTCCATGAAAATATTGACAACAGTCGTGATCACGGCAGTTTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTCCATGAAAATATTGACAACAGTCGTGATCACGGCAGTTTTTG  991

seq1  CTTAAAATAAAATGTTAGGTGGAAATCTGACACACTTGGGTAAAGCACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAAAATGTTAGGTGGAAATCTGACACACTTGGGTAAAGCACAA  1041

seq1  GGCTGGGGGTGCTTCATTTAAATCCCCAAACCCATGTAAAGCTAGGTACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGTGCTTCATTTAAATCCCCAAACCCATGTAAAGCTAGGTACT  1091

seq1  GCACACTGCTCTAATCCTCAATGGTTCTCTGTGACAGATGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCTCTAATCCTCAATGGTTCTCTGTGACAGATGAATTC  1136