BAC Information

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BAC

Clone NameB6Ng01-015B09
Chromosome3 (Build37)
Map Location 17,726,611 - 17,727,818
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
Downstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015B09.bB6Ng01-015B09.g
ACCDH849441DH849442
length1,1991,097
definitionDH849441|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B09, 5' end.DH849442|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttgagctctgagtagaaccagcatgaaaaattaacaatgttc
aaaaagaaagagtcagatagttttaataaatagactatatctgagcatgc
tgtgattggtccccaggatgcgaaggtgcttatctatggatgtatttaaa
tagttcttaccttactttctttatggaagcctctatgttatggattctgc
acgcatggtaatggagtttaaatctttacagacatcttccagacctctga
ttctttgacctagtacattatgtgtttctgataacagtgtgcatgtttgc
agcacatgacttttcagtggtgtgtttccaccaaggtctctcacccctct
gcctttcattatgctattaactttctcacatttctagctttttagctaga
gttgtcttcaacttctttcctctcttttctctttttctccccaaatctaa
gtgttcaaagttctgtctgtcctacctctgaggtttctcatataccttca
gtcctacagagatagtctccccatcagatatgaaagtccatcttctctcc
gttacaatccattatattttccagcagattatgtttggtccttccattaa
ctttcccaaaggactactctagcaaattttttcttgattatttacaaatt
ttcacagtttccttggacttctacactctaactttgatgaataaatatat
gactggttatcaacacttgttcataatgtaggcaaattgattacttgttg
gcccattatgttaacagttccattacagaattacgttatctcccttttat
ctcctctgacacataataaagttagacaactccattttcggttgctgtgg
cataatacttgagaataatatctttataagaatagtttatagcagaaagg
gtttatttagctcataatttagacgctgaaagtcagcatggaaaggctat
attagttgacctcttgaaaaaatcaccctggctgattgtagcttggggta
ggcataagaagttggttcatgggggaatggagacagtgagctgactgttc
actataaccacctcttatttgtgagacatacctcaatatatgaacaaaca
gctgattcttcgcttctgagggcagtgaccaatattctagtgttatcacc
ccttagtccacttcgaaggatcttgcttctctccacaccatgaattgag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcaaaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacgggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaaatgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aggatggacctgttgagactgccaaatccagggatccaccccataatcag
catccaaacgctgacaccattgcatacactagcaagattttatcgaaagg
acccagatgtagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctattcgatggatcacagggctcccaat
ggaggagctagagaaagtacccaaggacttaagggatctgcaaccctata
ggtgaaccacattatgaactaaccagtacccggagttctgactctagctg
tcatttgatcaaaggatggcctattcggccctactggaagagaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17726611_17727818
seq2: B6Ng01-015B09.b_49_1247 (reverse)

seq1  CTCAATATCATGGTGTTGAGA-AGACAGAATCTTTCCGAAGATGGAGCCT  49
      |||||| ||||||||| |||| |  ||  ||| || ||||| |||| |  
seq2  CTCAAT-TCATGGTGTGGAGAGAAGCAAGATCCTT-CGAAG-TGGA-CTA  46

seq1  AGAGTGGATA--ACTAGATTATTGGGTCACTGCCATCAG-AGCGATGAAT  96
      || |  ||||  |||||| |||| |||||||||| |||| ||||| ||||
seq2  AGGGGTGATAACACTAGAATATT-GGTCACTGCCCTCAGAAGCGAAGAAT  95

seq1  CAGCTGTT--GTCATATATTGAGTTATGTCTCAC-AATAGAAGGTGGTTA  143
      ||||||||   |||||||||||| |||||||||| ||||  |||||||||
seq2  CAGCTGTTTGTTCATATATTGAGGTATGTCTCACAAATAAGAGGTGGTTA  145

seq1  TTAAGTG-ACAGTCAGGCTCACTTGTCTCCATTCCCCCATGAAACCAACT  192
      |  |||| ||||||| |||||| |||||||||||||||||| ||||||||
seq2  T--AGTGAACAGTCA-GCTCAC-TGTCTCCATTCCCCCATG-AACCAACT  190

seq1  TTCTTTATGCCTTACCCCAAGCTACAATCCAGCCAGGGTGATTTTTTTCA  242
      |   ||||||| |||||||||||||||| |||||||||||| ||||||||
seq2  T--CTTATGCC-TACCCCAAGCTACAAT-CAGCCAGGGTGA-TTTTTTCA  235

seq1  AGAGGTCAACCTAATATAGCCTTTCCATGCTGACTTTCAGCCTTCTAAAT  292
      ||||||||| |||||||||||||||||||||||||||||| | |||||||
seq2  AGAGGTCAA-CTAATATAGCCTTTCCATGCTGACTTTCAG-CGTCTAAAT  283

seq1  TATGAGCTAAATAAACCCTTTCTGCTATAAACTATTCTTATAAAGATATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCTAAATAAACCCTTTCTGCTATAAACTATTCTTATAAAGATATT  333

seq1  ATTCTCAAGTATTATGCCACAGCAACCGAAAATGGAGTTGTCTAACTTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGTATTATGCCACAGCAACCGAAAATGGAGTTGTCTAACTTTA  383

seq1  TTATGTGTCAGAGGAGATAAAAGGGAGATAACGTAATTCTGTAATGGAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTCAGAGGAGATAAAAGGGAGATAACGTAATTCTGTAATGGAAC  433

seq1  TGTTAACATAATGGGCCAACAAGTAATCAATTTGCCTACATTATGAACAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACATAATGGGCCAACAAGTAATCAATTTGCCTACATTATGAACAA  483

seq1  GTGTTGATAACCAGTCATATATTTATTCATCAAAGTTAGAGTGTAGAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATAACCAGTCATATATTTATTCATCAAAGTTAGAGTGTAGAAGT  533

seq1  CCAAGGAAACTGTGAAAATTTGTAAATAATCAAGAAAAAATTTGCTAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAACTGTGAAAATTTGTAAATAATCAAGAAAAAATTTGCTAGAG  583

seq1  TAGTCCTTTGGGAAAGTTAATGGAAGGACCAAACATAATCTGCTGGAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTTGGGAAAGTTAATGGAAGGACCAAACATAATCTGCTGGAAAA  633

seq1  TATAATGGATTGTAACGGAGAGAAGATGGACTTTCATATCTGATGGGGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGATTGTAACGGAGAGAAGATGGACTTTCATATCTGATGGGGAG  683

seq1  ACTATCTCTGTAGGACTGAAGGTATATGAGAAACCTCAGAGGTAGGACAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTGTAGGACTGAAGGTATATGAGAAACCTCAGAGGTAGGACAG  733

seq1  ACAGAACTTTGAACACTTAGATTTGGGGAGAAAAAGAGAAAAGAGAGGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTTGAACACTTAGATTTGGGGAGAAAAAGAGAAAAGAGAGGAA  783

seq1  AGAAGTTGAAGACAACTCTAGCTAAAAAGCTAGAAATGTGAGAAAGTTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAAGACAACTCTAGCTAAAAAGCTAGAAATGTGAGAAAGTTAA  833

seq1  TAGCATAATGAAAGGCAGAGGGGTGAGAGACCTTGGTGGAAACACACCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAATGAAAGGCAGAGGGGTGAGAGACCTTGGTGGAAACACACCAC  883

seq1  TGAAAAGTCATGTGCTGCAAACATGCACACTGTTATCAGAAACACATAAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTCATGTGCTGCAAACATGCACACTGTTATCAGAAACACATAAT  933

seq1  GTACTAGGTCAAAGAATCAGAGGTCTGGAAGATGTCTGTAAAGATTTAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGTCAAAGAATCAGAGGTCTGGAAGATGTCTGTAAAGATTTAAA  983

seq1  CTCCATTACCATGCGTGCAGAATCCATAACATAGAGGCTTCCATAAAGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTACCATGCGTGCAGAATCCATAACATAGAGGCTTCCATAAAGAA  1033

seq1  AGTAAGGTAAGAACTATTTAAATACATCCATAGATAAGCACCTTCGCATC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTAAGAACTATTTAAATACATCCATAGATAAGCACCTTCGCATC  1083

seq1  CTGGGGACCAATCACAGCATGCTCAGATATAGTCTATTTATTAAAACTAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCAATCACAGCATGCTCAGATATAGTCTATTTATTAAAACTAT  1133

seq1  CTGACTCTTTCTTTTTGAACATTGTTAATTTTTCATGCTGGTTCTACTCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTCTTTTTGAACATTGTTAATTTTTCATGCTGGTTCTACTCA  1183

seq1  GAGCTCAACAGAATTC  1208
      ||||||||||||||||
seq2  GAGCTCAACAGAATTC  1199