BAC Information

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BAC

Clone NameB6Ng01-015I20
Chromosome3 (Build37)Y (Build37)
Map Location 58,931,268 - 58,932,3461,870,346 - 1,870,570
singlet/doubletsingletsinglet
Overlap geneP2ry14
Upstream geneLOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171
Downstream geneGpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015I20.bB6Ng01-015I20.g
ACCDH849776DH849777
length1,072272
definitionDH849776|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I20, 5' end.DH849777|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,931,268 - 58,932,346)(1,870,346 - 1,870,570)
sequence
gaattcagtgtagcagaatgtaagttgtatgtggaactttagcagcacat
tgctgtcctttaagaaaccactcttggttgtcagttcagtctctgtgagc
tcgtgtgagcccaggttagttgatgctgtggactttcttgtgtccttgac
ccagctggctcctacaatcctgccctcccatcttctgaagaagtccccaa
gctccacctaatgtttggctgtgggtctctgtatctatttccatcatttg
ctggctgaagcctctctcatgacaatgtactggacaccagtctatgagta
tagcaaaatgtcactggggatcagtttttatcataggttttatctctggg
tcctggctctcaggcagtgtcagggataggcatgggtttcaagctggacc
agtcattggttggcaactcgcacaaattctgtgccacctttacccttgcc
cattttgcaggcagaacaaattataggtcgaggggattgtgcctgcgttg
gtgtcccagtgccaccactggaagtcttgtctggctacagagatggctgg
ttcaggctccgtatcactaagagtcttagctagggtcaccctcatagatt
ctcatgagtttccatggcactgggtttctaacttgtcctagagatgtccc
aattccagttgtctctcctagtactctctccctccatgcccaccacctaa
cccttcctcttctcttcccaactcccttgcaggcacaagattgtctagcc
tttgtaggagaggtgtctaatcttcccacagtgtgatatgccacggcatg
ctccaatttatctgataatttgcatgagattaaatcttttagattctttt
gccaagacagcattctgtagtagcataatagtggtccagggctcttgaga
actgcctgctttttgtgaccaggtattaaaagatggtcgaaactacagca
cagtgcgacttacctatatagctctttggtgaactcatgcttttaaggta
tatttgaggcttttttaaatggctttaattgacattttagacttcttaat
ctttagtctacgcaagtagtgt
ctgatctttccaacaatggatggatcacagggctcccaatggaggagcta
gagaaagtagccaaggagctaaagggatctgcaaccctataggcggaaca
acattatgaactaaccagtaccccggagctcttgactctagctgcatatg
tatcaaaagatggcctagtcggccatcactggaaagagaggcccattgga
catgcaaactttatatgccccagtacaggggaacaccagggccaaaaagg
gggagtgggtgggtaggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58931268_58932346
seq2: B6Ng01-015I20.b_46_1117

seq1  GAATTCAGTGTAGCAGAATGTAAGTTGTATGTGGAACTTTAGCAGCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTAGCAGAATGTAAGTTGTATGTGGAACTTTAGCAGCACAT  50

seq1  TGCTGTCCTTTAAGAAACCACTCTTGGTTGTCAGTTCAGTCTCTGTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTTTAAGAAACCACTCTTGGTTGTCAGTTCAGTCTCTGTGAGC  100

seq1  TCGTGTGAGCCCAGGTTAGTTGATGCTGTGGACTTTCTTGTGTCCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGAGCCCAGGTTAGTTGATGCTGTGGACTTTCTTGTGTCCTTGAC  150

seq1  CCAGCTGGCTCCTACAATCCTGCCCTCCCATCTTCTGAAGAAGTCCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGCTCCTACAATCCTGCCCTCCCATCTTCTGAAGAAGTCCCCAA  200

seq1  GCTCCACCTAATGTTTGGCTGTGGGTCTCTGTATCTATTTCCATCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACCTAATGTTTGGCTGTGGGTCTCTGTATCTATTTCCATCATTTG  250

seq1  CTGGCTGAAGCCTCTCTCATGACAATGTACTGGACACCAGTCTATGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAAGCCTCTCTCATGACAATGTACTGGACACCAGTCTATGAGTA  300

seq1  TAGCAAAATGTCACTGGGGATCAGTTTTTATCATAGGTTTTATCTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAATGTCACTGGGGATCAGTTTTTATCATAGGTTTTATCTCTGGG  350

seq1  TCCTGGCTCTCAGGCAGTGTCAGGGATAGGCATGGGTTTCAAGCTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTCTCAGGCAGTGTCAGGGATAGGCATGGGTTTCAAGCTGGACC  400

seq1  AGTCATTGGTTGGCAACTCGCACAAATTCTGTGCCACCTTTACCCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGGTTGGCAACTCGCACAAATTCTGTGCCACCTTTACCCTTGCC  450

seq1  CATTTTGCAGGCAGAACAAATTATAGGTCGAGGGGATTGTGCCTGCGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCAGGCAGAACAAATTATAGGTCGAGGGGATTGTGCCTGCGTTG  500

seq1  GTGTCCCAGTGCCACCACTGGAAGTCTTGTCTGGCTACAGAGATGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAGTGCCACCACTGGAAGTCTTGTCTGGCTACAGAGATGGCTGG  550

seq1  TTCAGGCTCCGTATCACTAAGAGTCTTAGCTAGGGTCACCCTCATAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCCGTATCACTAAGAGTCTTAGCTAGGGTCACCCTCATAGATT  600

seq1  CTCATGAGTTTCCATGGCACTGGGTTTCTAACTTGTCCTAGAGATGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGTTTCCATGGCACTGGGTTTCTAACTTGTCCTAGAGATGTCCC  650

seq1  AATTCCAGTTGTCTCTCCTAGTACTCTCTCCCTCCATGCCCACCACCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTTGTCTCTCCTAGTACTCTCTCCCTCCATGCCCACCACCTAA  700

seq1  CCCTTCCTCTTCTCTTCCCAACTCCCTTGCAGGCACAAGATTGTCTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTTCTCTTCCCAACTCCCTTGCAGGCACAAGATTGTCTAGCC  750

seq1  TTTGTAGGAGAGGTGTCTAATCTTCCCACAGTGTGATATGCCACGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAGAGGTGTCTAATCTTCCCACAGTGTGATATGCCACGGCATG  800

seq1  CTCCAATTTATCTGATAATTTGCATGAGATTAGATCTTTTAGATTCTTTT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCCAATTTATCTGATAATTTGCATGAGATTAAATCTTTTAGATTCTTTT  850

seq1  GCCAAGACAGCATTCTGTAGTAGCAT-ATAGTGGTCCAGGGCTC-TGAGA  898
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GCCAAGACAGCATTCTGTAGTAGCATAATAGTGGTCCAGGGCTCTTGAGA  900

seq1  ACTGCCTGCTTTTGTGGACCAGGTATTAAACAGATGGTCGAAACTACAGC  948
      |||||||||||||   |||||||||||||| |||||||||||||||||||
seq2  ACTGCCTGCTTTTTGTGACCAGGTATTAAA-AGATGGTCGAAACTACAGC  949

seq1  ACAGTGCGACTTACCTATATAAGCTCTTT-GTGAACTCATGCTTTTTAGG  997
      |||||||||||||||||||| |||||||| |||||||||||||||| |||
seq2  ACAGTGCGACTTACCTATAT-AGCTCTTTGGTGAACTCATGCTTTTAAGG  998

seq1  TTAATATTTTAAGCTCTTTTAAATTGCCTTAAAATGAACATTTTAGAACT  1047
      |  |||||| | ||| |||||||| || ||  |||  ||||||||| |||
seq2  T--ATATTTGAGGCTTTTTTAAATGGCTTT--AATTGACATTTTAG-ACT  1043

seq1  TCTTACATCTTTAGTCTACAGCACAGTAGTGT  1079
      ||||| ||||||||||||| ||| ||||||||
seq2  TCTTA-ATCTTTAGTCTAC-GCA-AGTAGTGT  1072

seq1: chrY_1870346_1870570
seq2: B6Ng01-015I20.g_122_346

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGT  225
      ||||| ||||||||||||||||| |
seq2  AGGGGGAGTGGGTGGGTAGGGGATT  225