BAC Information

Click to search

BAC

Clone NameB6Ng01-015K20
Chromosome3 (Build37)
Map Location 154,577,419 - 154,753,107
singlet/doubletdoublet
Overlap geneTnni3k, Fpgt
Upstream geneAcadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneLrrc44, EG383956, Scp2-ps1, EG668902, LOC624519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015K20.bB6Ng01-015K20.g
ACCDH849869DH849870
length1,0741,134
definitionDH849869|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K20, 5' end.DH849870|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,577,419 - 154,578,495)(154,751,980 - 154,753,107)
sequence
gaattctttatacagggcacattagttattacaaacaaaaataaatcaca
gaatataaagatgagacctctgagtgattcaaatttaagcctattgttca
gtgttcagtctacagacctaagccttgtatttatctcacggtaccatcta
aggtagaaatattaataatggaactgtactaggtgcagtgtctttgatca
gaaccctggcaggaacagaggctcctattggagaatttactacaaaagca
acctaagaaaggttctgaaataattgcataggattttattgtttcaattt
acatgggaaagacaattttggtcacatctgactccttgtttccttagtta
ctctttctgtgttagcagttattatctttcaacctcccaacaaaagaact
gtatttgagcaattgccactccaggacctgtgtggaaatgagcagtctga
acacatgccccaccccagtccccagcttattaaacatgcttttctaattc
acctgggaacagagtgcttggcttccctgtaactgaggggtaggagtcac
taaacaattgagtcactaaacaattgaggcgatgtttatgtatttccttt
tgaatcaaaaccagatgagtgcacacctttccacctacagtgttgttaaa
gtatcaacacccatatgaataacaatggtctgaggcatagagtagagtat
aaaaaacagtaagtaaaaaaaattttaaaacatcttactttgggctatga
atatatttagaaacattttctttagttcactacaaaataaaaagcttgtt
agtacatgaaaatatgtttggtgttctctgtctgtctgtctctgtctgtc
tgtctgtctgtctgtctgtcccttctccctctgtgtgtgtgtgtgttcac
atacaattgaaatgatttacacagggatattttattgccccattcacaca
attctacgtggaagaagactccatgcagctgtgctcacttgctctcagtg
agacgaactcaactcatctttaagtattaacttttatcaactgtcaggtt
taggggaaaggtaaatgttgaatt
gaattctctgaaggtcctgctaatccactctggtaacttattgttgactt
attcacatttgcccttgagctttctacctttgacaccgtagagactttgt
cccccttgcaaatgatctctcaaattttattttgccttaaaattcattga
tggtattttacttgagaaataaatactcatttttttcttttgttatgtgc
agtttgtaaatggtaggattttcacaaaatttatttttaacatagattat
tacatcatcaacttctatgaatgttttatttcacttttgttttgcaaata
gaaaattattttttataaaactcatgaaaatgtgaccatttctcaggcac
cttgaggggacttttgttgccgaggaaaatggatgatgatgataatgatg
atgataacccttttgtcaaaacttctgccttgcatttttgtctgattttt
aagagcaaaaaagctacaataattaacagttttaaaaacaaaagaaaagg
tgacaaaatatgtaaaagcaaatagaacatttcaaatgagaaaagtcaga
aaaacagtgttagaagtataaattaatacatgtaattatatgaacatttt
ggttttcatagaaacttctgttgtttatattccagtgagctaaaagtttt
taccaaggcttaacattagccttggggatatataattgagaatggtcata
tttgtagctttaaagatgctttgtaatttctgaggttgcatacacagtaa
tatgactttctatagatgacatgaacaaaaacatctaagtcctgctttca
agaaaaatttaacaatatagaacaattcattgtcttgtagagtaaaagtt
tttattatgagtttagtaaaactaattacacttagaaaataactagcaat
acattatagtgagccctctggatcctggccattccattcacctctgcaga
ttcagcaaccgtgaacgaaagtatttgaaaaaaaaataaaatggcctcta
tactaaatatgatcctttttaaaaaattcttggaatatctctacaatact
tcctggttataaacataaatttgtactagaatgggatatatattttccgg
gtaagcattggtgggctatacttgcaatactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154577419_154578495
seq2: B6Ng01-015K20.b_45_1118

seq1  GAATTCTTTATACAGGGCACATTAGTTATTACAAACAAAAATAAATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATACAGGGCACATTAGTTATTACAAACAAAAATAAATCACA  50

seq1  GAATATAAAGATGAGACCTCTGAGTGATTCAAATTTAAGCCTATTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAAGATGAGACCTCTGAGTGATTCAAATTTAAGCCTATTGTTCA  100

seq1  GTGTTCAGTCTACAGACCTAAGCCTTGTATTTATCTCACGGTACCATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTCTACAGACCTAAGCCTTGTATTTATCTCACGGTACCATCTA  150

seq1  AGGTAGAAATATTAATAATGGAACTGTACTAGGTGCAGTGTCTTTGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAATATTAATAATGGAACTGTACTAGGTGCAGTGTCTTTGATCA  200

seq1  GAACCCTGGCAGGAACAGAGGCTCCTATTGGAGAATTTACTACAAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGGCAGGAACAGAGGCTCCTATTGGAGAATTTACTACAAAAGCA  250

seq1  ACCTAAGAAAGGTTCTGAAATAATTGCATAGGATTTTATTGTTTCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAAAGGTTCTGAAATAATTGCATAGGATTTTATTGTTTCAATTT  300

seq1  ACATGGGAAAGACAATTTTGGTCACATCTGACTCCTTGTTTCCTTAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGAAAGACAATTTTGGTCACATCTGACTCCTTGTTTCCTTAGTTA  350

seq1  CTCTTTCTGTGTTAGCAGTTATTATCTTTCAACCTCCCAACAAAAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGTGTTAGCAGTTATTATCTTTCAACCTCCCAACAAAAGAACT  400

seq1  GTATTTGAGCAATTGCCACTCCAGGACCTGTGTGGAAATGAGCAGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAGCAATTGCCACTCCAGGACCTGTGTGGAAATGAGCAGTCTGA  450

seq1  ACACATGCCCCACCCCAGTCCCCAGCTTATTAAACATGCTTTTCTAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCCCCACCCCAGTCCCCAGCTTATTAAACATGCTTTTCTAATTC  500

seq1  ACCTGGGAACAGAGTGCTTGGCTTCCCTGTAACTGAGGGGTAGGAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAACAGAGTGCTTGGCTTCCCTGTAACTGAGGGGTAGGAGTCAC  550

seq1  TAAACAATTGAGTCACTAAACAATTGAGGCGATGTTTATGTATTTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTGAGTCACTAAACAATTGAGGCGATGTTTATGTATTTCCTTT  600

seq1  TGAATCAAAACCAGATGAGTGCACACCTTTCCACCTACAGTGTTGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAAACCAGATGAGTGCACACCTTTCCACCTACAGTGTTGTTAAA  650

seq1  GTATCAACACCCATATGAATAACAATGGTCTGAGGCATAGAGTAGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAACACCCATATGAATAACAATGGTCTGAGGCATAGAGTAGAGTAT  700

seq1  AAAAAACAGTAAGTAAAAAAAATTTTAAAACATCTTACTTTGGGCTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGTAAGTAAAAAAAATTTTAAAACATCTTACTTTGGGCTATGA  750

seq1  ATATATTTAGAAACATTTTCTTTAGTTCACTACAAAATAAAAAGCTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAGAAACATTTTCTTTAGTTCACTACAAAATAAAAAGCTTGTT  800

seq1  AGTACATGAAAATTATGTTTGGTGTTCTCTGTCTGTCTGTCTCTGTCTGT  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTACATGAAAA-TATGTTTGGTGTTCTCTGTCTGTCTGTCTCTGTCTGT  849

seq1  CTGTCTGTCTGTCTGTCTGTCTC-TCTCCCTCTGTGTGTGTGTGTGTTCA  899
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  CTGTCTGTCTGTCTGTCTGTCCCTTCTCCCTCTGTGTGTGTGTGTGTTCA  899

seq1  CATACAATTGAAATGATTTACACAGGGATA-TTTATTGCCCCATTCACAC  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATACAATTGAAATGATTTACACAGGGATATTTTATTGCCCCATTCACAC  949

seq1  CATTCTACGTGGAAGAAGACTCCCATGCAAGCTGTGCTCACTTGCTCTCA  998
       |||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  AATTCTACGTGGAAGAAGACT-CCATGC-AGCTGTGCTCACTTGCTCTCA  997

seq1  GTGAGACGGACTCAAACTCCATCTTTAAGTATT-ACCTTTATCAACTGCC  1047
      |||||||| |||| |||| |||||||||||||| || ||||||||||| |
seq2  GTGAGACGAACTC-AACT-CATCTTTAAGTATTAACTTTTATCAACTGTC  1045

seq1  AGGGGTTAGGGGAAAAGTAAATGTTGAATT  1077
      | || |||||||||| ||||||||||||||
seq2  A-GGTTTAGGGGAAAGGTAAATGTTGAATT  1074

seq1: chr3_154751980_154753107
seq2: B6Ng01-015K20.g_69_1202 (reverse)

seq1  CACAGTATTTGCA--TGTAGCCCA-CAATGCTTTACTGGAAAATATATTT  47
      ||||||| |||||  | ||||||| ||||||||  | ||||||||||  |
seq2  CACAGTA-TTGCAAGTATAGCCCACCAATGCTTACCCGGAAAATATA--T  47

seq1  ATGCCA-TCTAGTACAATATTATGTTTATATAAACA-GTAGTTATGTAGA  95
      || ||| ||||||||||  |||||||  ||||| || | |||  ||||||
seq2  ATCCCATTCTAGTACAAATTTATGTT--TATAACCAGGAAGTATTGTAGA  95

seq1  GATATTCCAGGAATTTTTTTAAAAAGGTACATATTTAGTATAGA-GACAT  144
      ||||||||| ||| |||||||||||||  ||||||||||||||| | |||
seq2  GATATTCCAAGAA-TTTTTTAAAAAGGATCATATTTAGTATAGAGGCCAT  144

seq1  TTTTATTTTCTTTCAAATACTTTCTGTCCACGGTTGCTTGAATCTGCAGA  194
      |||  |||| |||||||||||||| || ||||||||| ||||||||||||
seq2  TTTATTTTTTTTTCAAATACTTTC-GTTCACGGTTGC-TGAATCTGCAGA  192

seq1  GGTGGATGGAAT-GCCAGGATCCAGAGGGCTCACTAT-ATGTATTGCTAG  242
      |||| ||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GGTGAATGGAATGGCCAGGATCCAGAGGGCTCACTATAATGTATTGCTAG  242

seq1  TTATTTTCTAAGTGTAATTAGTTTTACTAAACTCATAATAAAAACTTTTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTAAGTGTAATTAGTTTTACTAAACTCATAATAAAAACTTTTA  292

seq1  CTCTACAAGACAATGAATTGTTCTATATTGTT-AATTTTTCTTGAAAGCA  341
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTACAAGACAATGAATTGTTCTATATTGTTAAATTTTTCTTGAAAGCA  342

seq1  GGACTTAGATGTTTTTGTTCATGTCATCTATAGAAAGTCATATTACTGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGATGTTTTTGTTCATGTCATCTATAGAAAGTCATATTACTGTG  392

seq1  TATGCAA-CTCAG-AATTACAAAGCATCTTTAAAGCTACAAATATGACCA  439
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TATGCAACCTCAGAAATTACAAAGCATCTTTAAAGCTACAAATATGACCA  442

seq1  TTCTCAATTATATAT-CCCAAGGCTAATGTTAAGCCTTGGT-AAAACTTT  487
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TTCTCAATTATATATCCCCAAGGCTAATGTTAAGCCTTGGTAAAAACTTT  492

seq1  TAGCTCACTGGAATATAAACAACAGAAGTTTCTATG-AAACCAAAATGTT  536
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGCTCACTGGAATATAAACAACAGAAGTTTCTATGAAAACCAAAATGTT  542

seq1  CATATAATTACATGTATTAATTTATACTTCTAACACTGTTTTTCTGACTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTACATGTATTAATTTATACTTCTAACACTGTTTTTCTGACTT  592

seq1  TTCTCATTTGAAATGTTCTATTTGCTTTTACATATTTTGTCACCTTTTCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTGAAATGTTCTATTTGCTTTTACATATTTTGTCACCTTTTCT  642

seq1  TTTGTTTTTAAAACTGTTAATTATTGTAGCTTTTTTGCTCTTAAAAATCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAAAACTGTTAATTATTGTAGCTTTTTTGCTCTTAAAAATCA  692

seq1  GACAAAAATGCAAGGCAGAAGTTTTGACAAAAGGGTTATCATCATCATTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAATGCAAGGCAGAAGTTTTGACAAAAGGGTTATCATCATCATTA  742

seq1  TCATCATCATCCATTTTCCTCGGCAACAAAAGTCCCCTCAAGGTGCCTGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCATCCATTTTCCTCGGCAACAAAAGTCCCCTCAAGGTGCCTGA  792

seq1  GAAATGGTCACATTTTCATGAGTTTTATAAAAAATAATTTTCTATTTGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTCACATTTTCATGAGTTTTATAAAAAATAATTTTCTATTTGCA  842

seq1  AAACAAAAGTGAAATAAAACATTCATAGAAGTTGATGATGTAATAATCTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGTGAAATAAAACATTCATAGAAGTTGATGATGTAATAATCTA  892

seq1  TGTTAAAAATAAATTTTGTGAAAATCCTACCATTTACAAACTGCACATAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAATAAATTTTGTGAAAATCCTACCATTTACAAACTGCACATAA  942

seq1  CAAAAGAAAAAAATGAGTATTTATTTCTCAAGTAAAATACCATCAATGAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAAAAATGAGTATTTATTTCTCAAGTAAAATACCATCAATGAA  992

seq1  TTTTAAGGCAAAATAAAATTTGAGAGATCATTTGCAAGGGGGACAAAGTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCAAAATAAAATTTGAGAGATCATTTGCAAGGGGGACAAAGTC  1042

seq1  TCTACGGTGTCAAAGGTAGAAAGCTCAAGGGCAAATGTGAATAAGTCAAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGGTGTCAAAGGTAGAAAGCTCAAGGGCAAATGTGAATAAGTCAAC  1092

seq1  AATAAGTTACCAGAGTGGATTAGCAGGACCTTCAGAGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTACCAGAGTGGATTAGCAGGACCTTCAGAGAATTC  1134