BAC Information

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BAC

Clone NameB6Ng01-015L15
Chromosome3 (Build37)
Map Location 55,096,699 - 55,226,492
singlet/doubletdoublet
Overlap geneDclk1
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L15.bB6Ng01-015L15.g
ACCDH849905DH849906
length1,1141,120
definitionDH849905|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L15, 5' end.DH849906|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,225,366 - 55,226,492)(55,096,699 - 55,097,812)
sequence
gaattctatccctcctgtgttgtgccacggaccctggacccagcctcctc
gaccctggcacccagatccccaggccagatgcccgctccctctctccagg
gggatctggagatagagactggaaacaggtaagggaggctgaggtgactg
ccacattggggtttttgccatatggtaaagcaaaggacaggtagaagctt
tgctttgccatgagggacccttcccctgcgtgtggatggaggatacagag
gaagctaacttttcgagatgaagtcacccctttaagatctcctctctcac
ttgcttgccacgctctgtgaggaagtgctttgcttcaggacatactccag
ctgccacagaccccaaaccaggaggctaaaacagtggctctccaccttcc
tgatgctgcggccgtctaatacagttcctcgtgctgtggtgacctcccaa
ctgtaaaatcatttcattgctacttcataactgtcaattttgctgctgtt
atgaatagtattgttcatgtgatatgcaggatatctgacacatgacctct
gtgaaagggtcatttgacacctcccccccccccaagacattgcaatccct
aggttaagaaaaaatcacgagcaatgggctgaagccatggctcagtggag
aagagtgctgtgcgctcttccacaggagccaggttcagttctcaggtagc
ccatacggagacatacagtctgtacctcctcttccaggggcctcttctgc
cctgcacaggcgctgcatgcgtgcaatacacatacatacatgcgtgcaat
acacctataggcaaacacctatgcatataaaatatataatctaaaacaag
tgctttaagaatcacgagccagtgtaacctttcgtctttataagttgact
gtctttggtatttgtatagagacagaaagctaactgacattgctagttga
aacagctcaaggtcactccggagtcatctttctcttctgtggcagccatc
tctcaatgatcaaggaggaagaaagcacagcatgcagacagagcatgtca
cttctcatctactgggtatgttaaagccaggaaggatgcaccctgtaaat
taagtcctgtgaca
gaattctcaggctatagcacaaagcaatcttttcttctctggaaagcctg
gaaatcctgtcattgacgttggtgctttcaggaggggtagcagagaattt
tccatgcctatcatctttaggacagagggatgcagctctggaaccctact
ggggaaaacagcctcagcagcctggtttgctctaggactgtccgcaggaa
gggcagctgcagcttggtacaaaagctgccatcctcccatcatccttgtg
cagcatcatgctttcatcagcctgctgtcagcagatgccttccgactctg
tgatgatggaagacgcgtgtagcttgtttacttagcatgatgaattctta
taaacgctctgggcgtatcagaattaagtcaaggtgtgtgctgctgctgg
cctcaatgtccggacagtgtacctaatttctaattgtgatgagacccgtt
tggggaagtgatgccatttaagtgtttcacaacccagggacagttttccc
agtgactcaccaggtgggtgtgcatatttggtgtcatctattctttattt
ataatacagtgaaattactatttttttttcattttccagtataatttcag
tgagtgggctgtttagagtttgggaacatttttaaacgtgtcatattttt
aaatgagtcttgacagtgtcaaattgtcatgaattttagagatggctttt
agaagctaagagcctttttcccaaatatttcttccttttctaacttcctc
ttctcctacacaggaagtaacactgttttgtgagtcactgcatcagcagc
cagcggttcttctttgtttcccattagattgctgttgttgttgatgctgc
tgctgctgcttgatgatgatggtttgcttcattgctcaggattaatgcac
atcaccttgtgcatggtacgcacttcagccacatctgcagcccttgggtt
tggacatacgtcctccactgtctagctcagtgggccttgagcatggctat
gtaacccacgatgccctcaaacagtggatgtttcagttcttccgggatgc
tataccttggcttgtttctccccctggttatgagactaatccatggggcg
tctcggattcctctggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55225366_55226492
seq2: B6Ng01-015L15.b_48_1161 (reverse)

seq1  TGTCACAGGACCCTCATACTCAGGGGCGCATCCTTCCTTTGCTTCTAACA  50
      |||||||||| | | ||   || ||| |||||||||| | |||| |||||
seq2  TGTCACAGGA-CTTAATTTACA-GGGTGCATCCTTCC-TGGCTT-TAACA  46

seq1  TACCCGGTAGATGAG-AGTGACACTGCTTCTGTCTGCATGCTGTGGCTCT  99
      ||||| ||||||||| ||||||| ||| |||||||||||||||| ||| |
seq2  TACCCAGTAGATGAGAAGTGACA-TGC-TCTGTCTGCATGCTGT-GCTTT  93

seq1  CTTCCTCC-TGATCATTTGAGAGATGGCTGCCACAGAAGAGGAAAGATGA  148
      |||||||| |||||| |||||||||||||||||||||||| |||||||||
seq2  CTTCCTCCTTGATCA-TTGAGAGATGGCTGCCACAGAAGA-GAAAGATGA  141

seq1  CT-CGGAGTGACCCCTTGGAGCCTTGTGTCAACTAGCAATGTCAGTTAGC  197
      || ||||||||||   | ||||  ||| ||||||||||||||||||||||
seq2  CTCCGGAGTGACC---TTGAGC--TGTTTCAACTAGCAATGTCAGTTAGC  186

seq1  TTTCTGTCTCTATAACAAATACCAAAGACAGTCAACTTATAAAGACGAAA  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCTAT-ACAAATACCAAAGACAGTCAACTTATAAAGACGAAA  235

seq1  GGTTACACTGGCTCGTGATTCTTAAAGCACTTGTTTTAGATTTATATATT  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTTACACTGGCTCGTGATTCTTAAAGCACTTGTTTTAGA-TTATATATT  284

seq1  TTATATGCATAGGTGTTTGCCTATAGGTGTATTGCACGCATGTATGTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCATAGGTGTTTGCCTATAGGTGTATTGCACGCATGTATGTATG  334

seq1  TGTATTGCACGCATGCAGCGCCTGTGCAGGGCAGAAGAGGCCCCTGGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCACGCATGCAGCGCCTGTGCAGGGCAGAAGAGGCCCCTGGAAG  384

seq1  AGGAGGTACAGACTGTATGTCTCCGTATGGGCTACCTGAGAACTGAACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTACAGACTGTATGTCTCCGTATGGGCTACCTGAGAACTGAACCT  434

seq1  GGCTCCTGTGGAAGAGCGCACAGCACTCTTCTCCACTGAGCCATGGCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTGGAAGAGCGCACAGCACTCTTCTCCACTGAGCCATGGCTTC  484

seq1  AGCCCATTGCTCGTGATTTTTTCTTAACCTAGGGATTGCAATGTCTTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTGCTCGTGATTTTTTCTTAACCTAGGGATTGCAATGTCTTGGG  534

seq1  GGGGGGGGAGGTGTCAAATGACCCTTTCACAGAGGTCATGTGTCAGATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGAGGTGTCAAATGACCCTTTCACAGAGGTCATGTGTCAGATAT  584

seq1  CCTGCATATCACATGAACAATACTATTCATAACAGCAGCAAAATTGACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATATCACATGAACAATACTATTCATAACAGCAGCAAAATTGACAG  634

seq1  TTATGAAGTAGCAATGAAATGATTTTACAGTTGGGAGGTCACCACAGCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTAGCAATGAAATGATTTTACAGTTGGGAGGTCACCACAGCAC  684

seq1  GAGGAACTGTATTAGACGGCCGCAGCATCAGGAAGGTGGAGAGCCACTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGTATTAGACGGCCGCAGCATCAGGAAGGTGGAGAGCCACTGT  734

seq1  TTTAGCCTCCTGGTTTGGGGTCTGTGGCAGCTGGAGTATGTCCTGAAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCCTGGTTTGGGGTCTGTGGCAGCTGGAGTATGTCCTGAAGCA  784

seq1  AAGCACTTCCTCACAGAGCGTGGCAAGCAAGTGAGAGAGGAGATCTTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTCCTCACAGAGCGTGGCAAGCAAGTGAGAGAGGAGATCTTAAA  834

seq1  GGGGTGACTTCATCTCGAAAAGTTAGCTTCCTCTGTATCCTCCATCCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACTTCATCTCGAAAAGTTAGCTTCCTCTGTATCCTCCATCCACA  884

seq1  CGCAGGGGAAGGGTCCCTCATGGCAAAGCAAAGCTTCTACCTGTCCTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGGAAGGGTCCCTCATGGCAAAGCAAAGCTTCTACCTGTCCTTTG  934

seq1  CTTTACCATATGGCAAAAACCCCAATGTGGCAGTCACCTCAGCCTCCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCATATGGCAAAAACCCCAATGTGGCAGTCACCTCAGCCTCCCTT  984

seq1  ACCTGTTTCCAGTCTCTATCTCCAGATCCCCCTGGAGAGAGGGAGCGGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCCAGTCTCTATCTCCAGATCCCCCTGGAGAGAGGGAGCGGGC  1034

seq1  ATCTGGCCTGGGGATCTGGGTGCCAGGGTCGAGGAGGCTGGGTCCAGGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTGGGGATCTGGGTGCCAGGGTCGAGGAGGCTGGGTCCAGGGT  1084

seq1  CCGTGGCACAACACAGGAGGGATAGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  CCGTGGCACAACACAGGAGGGATAGAATTC  1114

seq1: chr3_55096699_55097812
seq2: B6Ng01-015L15.g_68_1187

seq1  GAATTCTCAGGCTATAGCACAAAGCAATCTTTTCTTCTCTGGAAAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCTATAGCACAAAGCAATCTTTTCTTCTCTGGAAAGCCTG  50

seq1  GAAATCCTGTCATTGACGTTGGTGCTTTCAGGAGGGGTAGCAGAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTGTCATTGACGTTGGTGCTTTCAGGAGGGGTAGCAGAGAATTT  100

seq1  TCCATGCCTATCATCTTTAGGACAGAGGGATGCAGCTCTGGAACCCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTATCATCTTTAGGACAGAGGGATGCAGCTCTGGAACCCTACT  150

seq1  GGGGAAAACAGCCTCAGCAGCCTGGTTTGCTCTAGGACTGTCCGCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAACAGCCTCAGCAGCCTGGTTTGCTCTAGGACTGTCCGCAGGAA  200

seq1  GGGCAGCTGCAGCTTGGTACAAAAGCTGCCATCCTCCCATCATCCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGCAGCTTGGTACAAAAGCTGCCATCCTCCCATCATCCTTGTG  250

seq1  CAGCATCATGCTTTCATCAGCCTGCTGTCAGCAGATGCCTTCCGACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCATGCTTTCATCAGCCTGCTGTCAGCAGATGCCTTCCGACTCTG  300

seq1  TGATGATGGAAGACGCGTGTAGCTTGTTTACTTAGCATGATGAATTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGAAGACGCGTGTAGCTTGTTTACTTAGCATGATGAATTCTTA  350

seq1  TAAACGCTCTGGGCGTATCAGAATTAAGTCAAGGTGTGTGCTGCTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCTCTGGGCGTATCAGAATTAAGTCAAGGTGTGTGCTGCTGCTGG  400

seq1  CCTCAATGTCCGGACAGTGTACCTAATTTCTAATTGTGATGAGACCCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATGTCCGGACAGTGTACCTAATTTCTAATTGTGATGAGACCCGTT  450

seq1  TGGGGAAGTGATGCCATTTAAGTGTTTCACAACCCAGGGACAGTTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTGATGCCATTTAAGTGTTTCACAACCCAGGGACAGTTTTCCC  500

seq1  AGTGACTCACCAGGTGGGTGTGCATATTTGGTGTCATCTATTCTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCACCAGGTGGGTGTGCATATTTGGTGTCATCTATTCTTTATTT  550

seq1  ATAATACAGTGAAATTACTATTTTTTTTTCATTTTCCAGTATAATTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAGTGAAATTACTATTTTTTTTTCATTTTCCAGTATAATTTCAG  600

seq1  TGAGTGGGCTGTTTAGAGTTTGGGAACATTTTTAAACGTGTCATATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGCTGTTTAGAGTTTGGGAACATTTTTAAACGTGTCATATTTTT  650

seq1  AAATGAGTCTTGACAGTGTCAAATTGTCATGAATTTTAGAGATGGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCTTGACAGTGTCAAATTGTCATGAATTTTAGAGATGGCTTTT  700

seq1  AGAAGCTAAGAGCCTTTTTCCCAAATATTTCTTCCTTTTCTAACTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAAGAGCCTTTTTCCCAAATATTTCTTCCTTTTCTAACTTCCTC  750

seq1  TTCTCCTACACAGGAAGTAACACTGTTTTGTGAGTCACTGCATCAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTACACAGGAAGTAACACTGTTTTGTGAGTCACTGCATCAGCAGC  800

seq1  CAGCGGTTCTTCTTTGTTTCCCATTAGATTGCTGTTGTTGTTGATGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTTCTTCTTTGTTTCCCATTAGATTGCTGTTGTTGTTGATGCTGC  850

seq1  TGCTGCTGC-TGATGATGATGGTTGGC-TCAGTGCTCAGGATT-ATGCAC  897
      ||||||||| |||||||||||||| || ||| ||||||||||| ||||||
seq2  TGCTGCTGCTTGATGATGATGGTTTGCTTCATTGCTCAGGATTAATGCAC  900

seq1  ATCACCTTGTGCATGGTACGCAC-TCAGCCACATCTGCAGCCCTT-GGTT  945
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  ATCACCTTGTGCATGGTACGCACTTCAGCCACATCTGCAGCCCTTGGGTT  950

seq1  TGGACATACGTCCT-CACTGTCTAGCTCAGTGGGCCTTGAGCATGGCTAT  994
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGACATACGTCCTCCACTGTCTAGCTCAGTGGGCCTTGAGCATGGCTAT  1000

seq1  GTAACCCACGATGCCCTCAAACATGTGATGTTTCAGTTTCATCCGGGATG  1044
      |||||||||||||||||||||||   |||||||||| ||| |||||||||
seq2  GTAACCCACGATGCCCTCAAACAGTGGATGTTTCAG-TTCTTCCGGGATG  1049

seq1  CTATA-CTTGGC-TGTTTCTCCACCCTGGTTATGAGACCTAATCCATGTG  1092
      ||||| |||||| ||||||||| |||||||||||||| |||||||||| |
seq2  CTATACCTTGGCTTGTTTCTCC-CCCTGGTTATGAGA-CTAATCCATGGG  1097

seq1  GCG-CTCTGACTTCTCTGGAGCT  1114
      ||| ||| || | ||||||||||
seq2  GCGTCTCGGATTCCTCTGGAGCT  1120