BAC Information

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BAC

Clone NameB6Ng01-015M14
Chromosome3 (Build37)
Map Location 145,458,052 - 145,606,968
singlet/doubletdoublet
Overlap geneDdah1, LOC100040331, Bcl10, 2410004B18Rik
Upstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneSyde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015M14.bB6Ng01-015M14.g
ACCDH849951DH849952
length1,0601,007
definitionDH849951|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M14, 5' end.DH849952|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,605,887 - 145,606,968)(145,458,052 - 145,458,571)
sequence
gaattctacagtggaaagtcttgaggcgacactcattagttcgttaacat
aaatacgttcatggagatgtctgtcatagtaacgcacaaaagcaaacact
ccactcaacgacacatctcaggagtcacaattctctacttcttcttcttg
gctgcttctcctggctccactctgcgaatcttagatgcccgctcatcttt
gtcatcatcttgaagagggaaagaagagagctttcttagttctctaaaaa
tcaacacaaaacacacattcagctttatgccgaaacagttactcactgga
cgtttaaaggcatactaataaaaactaaatactaatttttagaacacgga
tattaaattacatataaaatggtttaattgtagcaatataatatttgcaa
actgaccttttagaggcaagttaataatgtcgtcgcataagatattttgg
tgaaaatcagctttttctgaaacactcactccgcaaactctccagcacaa
acagtacatccatttagatacagtccatacttcacagcatagagcactgc
tccttctacaaagcatgcatcttctagccgtgccgagtaaccaccagcgt
gacttgtcctctcagatttcacctccagtcttatgattattaacccacca
cacaagtggaggttcagacaacctcgcaggtgtctgctctaattctggac
cagtcctcctaggaggtcagaacatcctaatggcaacagaataagcaggc
tccaccttcaagttaagggaaagttggatgaaggaagactactgaactat
acagtaaacagcacccactgccccacacagtcattgtctgcggacacaga
aaatttccattaataaaaatgtcaattctgacaagcagaccttttcatcc
tataaaacaaaaacccagcactttatttaagtggttcagtaacacaggca
gctgcagcggattagctgctatcccatctcctatgaatgtgtgctgtaag
atccagcaagctggtggtggtatgtctcaatcagagatgagaaggagact
tgcatcagct
gaattctgttacgtgattaaaagctacagggtgagttaaaatatttgtag
aacatatacctggtagtggaggtctttacaaaatatttaaataattctta
aaactaaatgataaagctgagggggtggtgcacacttttaatcctggcac
cggggaagtagaggaaggcggatctctgtgaattggaggccagcccagtc
cacatagcaagttccaggagagccagggtcccatcctatctcaaaacaaa
caaacaaacaaaaaccaacgcaaacccacacgacaaaaaacctaccacca
ccaccaccaaacaacagcaacaaaaaacaaagctcaacaataaaaaaaat
catatgattaataaatcaacgtctccataaataaaacattcaatgtcatc
tgttgttaataaatgataaattaaaatgtggggaatgtaacttgcctaac
aagatggcgggaggaaagttatcagtatcagctgcttggcaagaatacag
aacaaggaattcttcctgctcatatgtaaatggcgcagccatggagaagc
ttctccccgggccagaagagccttaccatacagtccagcaaccgtgtcct
tgggctcactcaaataaactgaaattctatgtgtacacaaatgctggcgt
ttaattatgtatggaacacctacataatcacccaaacctggatgcaagaa
gctgcccagtgagtaaaggaatagactaactacggcgcactcatgttagg
gaattatttaggaaataagagacaagcagtattttgtgtaatgcaaaaac
agatctttagtacgccttactgactgaagaagtccttctggaaagcctag
acactgtgtgattccttctataggacactcggggagacacacaaccacag
caacgcaaaagggttagcgattagggcggacatttgagtagtgaagcact
ggagatctgggggagactgaaaactgcccagtgtgtcgttgctgtggctt
actgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145605887_145606968
seq2: B6Ng01-015M14.b_48_1107 (reverse)

seq1  AGCTGATAGCAGTTCTCCTGTCTCATCCTCCTGGATTTGAGACATACCAC  50
      ||||||| |||  |||||| |||||||   |||   ||||||||||||||
seq2  AGCTGAT-GCAAGTCTCCT-TCTCATC--TCTG--ATTGAGACATACCAC  44

seq1  CACCCAGCTTTGGCTGGGATTCTTTACAGCACACATTCATTAAGGGAGAT  100
      || |||||||  ||| ||||   |||||||||||||||||    ||||||
seq2  CA-CCAGCTT--GCT-GGAT--CTTACAGCACACATTCAT---AGGAGAT  85

seq1  GGGAATTAGCAGCTAATCCGCTGCAGCTGCCTGTGTTTACTGAACCACTT  150
      ||||  ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGGA--TAGCAGCTAATCCGCTGCAGCTGCCTGTG-TTACTGAACCACTT  132

seq1  AAATAAAGTGCTTGGGTTTTTGTTTTTAATAGGATGAAAAGGTCTGCTTT  200
      ||||||||||| ||||||||||||||  ||||||||||||||||||| ||
seq2  AAATAAAGTGC-TGGGTTTTTGTTTT--ATAGGATGAAAAGGTCTGC-TT  178

seq1  GTCAGAATTGACATTTTTATTAATGGAAATTTTCTGTGTCCGCAGACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATTGACATTTTTATTAATGGAAATTTTCTGTGTCCGCAGACAAT  228

seq1  GACTGTGTGGGGCAGTGGGTGCTGTTTACTGTATAGTTCAGTAGTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTGGGGCAGTGGGTGCTGTTTACTGTATAGTTCAGTAGTCTTCC  278

seq1  TTCATCCAACTTTCCCTTAACTTGAAGGTGGAGCCTGCTTATTCTGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAACTTTCCCTTAACTTGAAGGTGGAGCCTGCTTATTCTGTTGC  328

seq1  CATTAGGATGTTCTGACCTCCTAGGAGGACTGGTCCAGAATTAGAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGATGTTCTGACCTCCTAGGAGGACTGGTCCAGAATTAGAGCAGA  378

seq1  CACCTGCGAGGTTGTCTGAACCTCCACTTGTGTGGTGGGTTAATAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCGAGGTTGTCTGAACCTCCACTTGTGTGGTGGGTTAATAATCAT  428

seq1  AAGACTGGAGGTGAAATCTGAGAGGACAAGTCACGCTGGTGGTTACTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAGGTGAAATCTGAGAGGACAAGTCACGCTGGTGGTTACTCGG  478

seq1  CACGGCTAGAAGATGCATGCTTTGTAGAAGGAGCAGTGCTCTATGCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTAGAAGATGCATGCTTTGTAGAAGGAGCAGTGCTCTATGCTGTG  528

seq1  AAGTATGGACTGTATCTAAATGGATGTACTGTTTGTGCTGGAGAGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGACTGTATCTAAATGGATGTACTGTTTGTGCTGGAGAGTTTGC  578

seq1  GGAGTGAGTGTTTCAGAAAAAGCTGATTTTCACCAAAATATCTTATGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGTGTTTCAGAAAAAGCTGATTTTCACCAAAATATCTTATGCGA  628

seq1  CGACATTATTAACTTGCCTCTAAAAGGTCAGTTTGCAAATATTATATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATTATTAACTTGCCTCTAAAAGGTCAGTTTGCAAATATTATATTGC  678

seq1  TACAATTAAACCATTTTATATGTAATTTAATATCCGTGTTCTAAAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAACCATTTTATATGTAATTTAATATCCGTGTTCTAAAAATTA  728

seq1  GTATTTAGTTTTTATTAGTATGCCTTTAAACGTCCAGTGAGTAACTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGTTTTTATTAGTATGCCTTTAAACGTCCAGTGAGTAACTGTTT  778

seq1  CGGCATAAAGCTGAATGTGTGTTTTGTGTTGATTTTTAGAGAACTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATAAAGCTGAATGTGTGTTTTGTGTTGATTTTTAGAGAACTAAGAA  828

seq1  AGCTCTCTTCTTTCCCTCTTCAAGATGATGACAAAGATGAGCGGGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTTCTTTCCCTCTTCAAGATGATGACAAAGATGAGCGGGCATCT  878

seq1  AAGATTCGCAGAGTGGAGCCAGGAGAAGCAGCCAAGAAGAAGAAGTAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCGCAGAGTGGAGCCAGGAGAAGCAGCCAAGAAGAAGAAGTAGAG  928

seq1  AATTGTGACTCCTGAGATGTGTCGTTGAGTGGAGTGTTTGCTTTTGTGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGACTCCTGAGATGTGTCGTTGAGTGGAGTGTTTGCTTTTGTGCG  978

seq1  TTACTATGACAGACATCTCCATGAACGTATTTATGTTAACGAACTAATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGACAGACATCTCCATGAACGTATTTATGTTAACGAACTAATGA  1028

seq1  GTGTCGCCTCAAGACTTTCCACTGTAGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  GTGTCGCCTCAAGACTTTCCACTGTAGAATTC  1060

seq1: chr3_145458052_145458571
seq2: B6Ng01-015M14.g_69_588

seq1  GAATTCTGTTACGTGATTAAAAGCTACAGGGTGAGTTAAAATATTTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACGTGATTAAAAGCTACAGGGTGAGTTAAAATATTTGTAG  50

seq1  AACATATACCTGGTAGTGGAGGTCTTTACAAAATATTTAAATAATTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACCTGGTAGTGGAGGTCTTTACAAAATATTTAAATAATTCTTA  100

seq1  AAACTAAATGATAAAGCTGAGGGGGTGGTGCACACTTTTAATCCTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATGATAAAGCTGAGGGGGTGGTGCACACTTTTAATCCTGGCAC  150

seq1  CGGGGAAGTAGAGGAAGGCGGATCTCTGTGAATTGGAGGCCAGCCCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAGTAGAGGAAGGCGGATCTCTGTGAATTGGAGGCCAGCCCAGTC  200

seq1  CACATAGCAAGTTCCAGGAGAGCCAGGGTCCCATCCTATCTCAAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCAAGTTCCAGGAGAGCCAGGGTCCCATCCTATCTCAAAACAAA  250

seq1  CAAACAAACAAAAACCAACGCAAACCCACACGACAAAAAACCTACCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAACCAACGCAAACCCACACGACAAAAAACCTACCACCA  300

seq1  CCACCACCAAACAACAGCAACAAAAAACAAAGCTCAACAATAAAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCAAACAACAGCAACAAAAAACAAAGCTCAACAATAAAAAAAAT  350

seq1  CATATGATTAATAAATCAACGTCTCCATAAATAAAACATTCAATGTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATTAATAAATCAACGTCTCCATAAATAAAACATTCAATGTCATC  400

seq1  TGTTGTTAATAAATGATAAATTAAAATGTGGGGAATGTAACTTGCCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAATAAATGATAAATTAAAATGTGGGGAATGTAACTTGCCTAAC  450

seq1  AAGATGGCGGGAGGAAAGTTATCAGTATCAGCTGCTTGGCAAGAATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCGGGAGGAAAGTTATCAGTATCAGCTGCTTGGCAAGAATACAG  500

seq1  AACAAGGAATTCTTCCTGCT  520
      ||||||||||||||||||||
seq2  AACAAGGAATTCTTCCTGCT  520