BAC Information

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BAC

Clone NameB6Ng01-016C17
Chromosome3 (Build37)
Map Location 18,742,497 - 18,743,642
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C17.bB6Ng01-016C17.g
ACCDH850218DH850219
length1,1171,133
definitionDH850218|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C17, 5' end.DH850219|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaagaaggagcaaagtgtccatactttggtcttcgttcttcctg
agtttcatgtgttttgcaaatagtatcttgtatcttgggtattctaagtt
tctgggctaatatccacttatcagtgagtacatatcatgtgagttctttt
gtgattgtgttacctcactcaagatgatgccctccaggtccatccaattt
cctaggaatttcataaattcattctttttaatagctgagtagtattccat
tgtgtaaatgtaccacattttctgtatccattcctctgttgaggggcatc
tgggttctttccagcttctggctattacaaataaggctgctatgaacata
gtagagcatgtgtccttcttaccggttggaacatcttctggatatatgcc
caggagaggtattgcaggaccctctggtagtactatgtccaattttctga
ggaaccaccagacttatttccagagtggttgtacaaggtagcaattccac
caacaatggaggagtgttcctctttctccatatccttgccagcatctgct
gtcacctgaatttttgatcttagccattctgactggtgtgaggtggaatc
tcagggttgttttgatttgcatttccctgatgattaaggatgctgaacat
ttttttttttcagttgcttctcagtcattccgtattcctcaggtaagaat
tctttgtttagctctgagccccattttttaatggggtttttgattttctg
gagtccaccttcttgagttatttatatatatcagatattagtcctctatc
tgatttaggataggcaaagatccttttcccaatctattggtggccttttt
atcttattcaaagtgtcttttgccttacagaagctttgcaattttatgag
gtcccatttatcaattctcgatattacagcacaagccattgctgttctat
tcagaattttccccctgtgctcatatcttcagctttgacccacttttttt
tatttccatttttataggtattagctcattacatttccaatgctaaccaa
agtcccctaatcaaccactctccgtccctgactgaccactccccctattg
acctcgtgcgtaccgta
gaattcaaggatcccctaggctatttaagaccctatctaaaatccatgcc
taaaatattagattaaaagatactgttcagataaacaaaaaaaaaatttc
aacagtacagttgagttattgggacgtctaaataagcaaagcaacatgta
aagaaatgttcaggttctaggaaaattctaccagatgggaatctggatct
atatggaggcataatgtgtcacacatatggtaaatgtgtaggtgaatgta
aagacctgtattttccctttaaattatttttttcttaaaggatagcatac
tgcttcaaacaaacaataacataataatgtgtttattatagcatatgtaa
aacaaaacacacagaaacagtagaacaaaaatagaagatgctaagttgac
tgatggtgttaaaaggatctcagtgtttgttgagtaatttagtactaaca
tccttaatagattgtggcctattaaggatgcatattgtaattcctaggca
gccactaataattatcaacaaattagctcaaatagcataggtattactgg
aaattttacaaaggataatgcaaatagaactacagttgtcctagggtttc
taatgtgataagacactatgatgaaaaatcaagttggagaggaaagggtt
tgcttggcttcaaaggaagtcaggacagggactaaaaacagagcaggatc
ctggaggcaggagctgatgcagaagacatggatgggtgctgcttattggc
ttgcttcacatggtttgctcagcctgctttcttatggaacccagtactac
cagcccaggggtggcaacacccaccaaggggctgagccctctcaggtcat
cacagtattaaataaatgctctacaggctgttccacagcccaatctcata
gaggcattttcacagttaagtttcccctctaggtgaatataggttgtgtc
aacgtgcataaatctatccagcacatacacaagtatgatacagcaattcc
cttcatatttgtatgtgttgtattgttaaggtatgctatcaataacacct
acccaccactttcacttacttataccaatttaatcctcatgtgaaaggtc
tgaactccaacttcatgtaacagtaagaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18742497_18743642
seq2: B6Ng01-016C17.g_67_1199

seq1  GAATTCAAGGATCCCCTAGGCTATTTAAGACCCTATCTAAAATCCATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGATCCCCTAGGCTATTTAAGACCCTATCTAAAATCCATGCC  50

seq1  TAAAATATTAGATTAAAAGATACTGTTCAGATAAACAAAAAAAAAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAGATTAAAAGATACTGTTCAGATAAACAAAAAAAAAATTTC  100

seq1  AACAGTACAGTTGAGTTATTGGGACGTCTAAATAAGCAAAGCAACATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACAGTTGAGTTATTGGGACGTCTAAATAAGCAAAGCAACATGTA  150

seq1  AAGAAATGTTCAGGTTCTAGGAAAATTCTACCAGATGGGAATCTGGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTTCAGGTTCTAGGAAAATTCTACCAGATGGGAATCTGGATCT  200

seq1  ATATGGAGGCATAATGTGTCACACATATGGTAAATGTGTAGGTGAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGGCATAATGTGTCACACATATGGTAAATGTGTAGGTGAATGTA  250

seq1  AAGACCTGTATTTTCCCTTTAAATTATTTTTTTCTTAAAGGATAGCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGTATTTTCCCTTTAAATTATTTTTTTCTTAAAGGATAGCATAC  300

seq1  TGCTTCAAACAAACAATAACATAATAATGTGTTTATTATAGCATATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAACAAACAATAACATAATAATGTGTTTATTATAGCATATGTAA  350

seq1  AACAAAACACACAGAAACAGTAGAACAAAAATAGAAGATGCTAAGTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACACACAGAAACAGTAGAACAAAAATAGAAGATGCTAAGTTGAC  400

seq1  TGATGGTGTTAAAAGGATCTCAGTGTTTGTTGAGTAATTTAGTACTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGTTAAAAGGATCTCAGTGTTTGTTGAGTAATTTAGTACTAACA  450

seq1  TCCTTAATAGATTGTGGCCTATTAAGGATGCATATTGTAATTCCTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATAGATTGTGGCCTATTAAGGATGCATATTGTAATTCCTAGGCA  500

seq1  GCCACTAATAATTATCAACAAATTAGCTCAAATAGCATAGGTATTACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAATAATTATCAACAAATTAGCTCAAATAGCATAGGTATTACTGG  550

seq1  AAATTTTACAAAGGATAATGCAAATAGAACTACAGTTGTCCTAGGGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACAAAGGATAATGCAAATAGAACTACAGTTGTCCTAGGGTTTC  600

seq1  TAATGTGATAAGACACTATGATGAAAAATCAAGTTGGAGAGGAAAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATAAGACACTATGATGAAAAATCAAGTTGGAGAGGAAAGGGTT  650

seq1  TGCTTGGCTTCAAAGGAAGTCAGGACAGGGACTAAAAACAGAGCAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTTCAAAGGAAGTCAGGACAGGGACTAAAAACAGAGCAGGATC  700

seq1  CTGGAGGCAGGAGCTGATGCAGAAGACATGGATGGGTGCTGCTTATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCAGGAGCTGATGCAGAAGACATGGATGGGTGCTGCTTATTGGC  750

seq1  TTGCTTCACATGGTTTGCTCAGCCTGCTTTCTTATGGAACCCAGTACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCACATGGTTTGCTCAGCCTGCTTTCTTATGGAACCCAGTACTAC  800

seq1  CAGCCCAGGGGTGGCAACACCCACCAA-GGGCTGAGCCCTCTCAGGTCAT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCCCAGGGGTGGCAACACCCACCAAGGGGCTGAGCCCTCTCAGGTCAT  850

seq1  CACAGTATTAAATAAATGCTCTACAGGCTGTTCCACAGCCCAATCTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTAAATAAATGCTCTACAGGCTGTTCCACAGCCCAATCTCATA  900

seq1  GAGGCATTTTCACAGTTAAGGTTTCCCCCTCTAAGGTGAATATAGGTTGT  949
      ||||||||||||||||||||  || ||||||| |||||||||||||||||
seq2  GAGGCATTTTCACAGTTAAG--TTTCCCCTCT-AGGTGAATATAGGTTGT  947

seq1  GTCAACGTGGCATAAATCTATCCAGCACATACACAAAGTATGATACAGCA  999
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  GTCAACGT-GCATAAATCTATCCAGCACATACAC-AAGTATGATACAGCA  995

seq1  ATTCACCTTCATATATGTATGTG-TGTATTTGTTATAGTTATGCATATAC  1048
      |||| ||||||||| |||||||| |||| |||||| || ||||| |||  
seq2  ATTC-CCTTCATATTTGTATGTGTTGTA-TTGTTA-AGGTATGC-TATCA  1041

seq1  ATATACACATACACAATCACATACACATACTTATACAAATTAAATCACTA  1098
      ||| |||| ||| | | ||| | ||| ||||||||| |||| ||||   |
seq2  ATA-ACACCTAC-CCACCACTTTCACTTACTTATACCAATTTAATCCTCA  1089

seq1  TGTTGAAAGTTCTGAACTCCAACCTTCATGGTAACAGTAAAGAAGATT  1146
      || |||||| |||||||||||| |||||| |||||||| |||||||||
seq2  TG-TGAAAGGTCTGAACTCCAA-CTTCAT-GTAACAGT-AAGAAGATT  1133