BAC Information

Click to search

BAC

Clone NameB6Ng01-016H02
Chromosome3 (Build37)
Map Location 82,360,112 - 82,455,605
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H02.bB6Ng01-016H02.g
ACCDH850404DH850405
length1,130611
definitionDH850404|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H02, 5' end.DH850405|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,454,475 - 82,455,605)(82,360,112 - 82,360,722)
sequence
gaattcatgatgctggatgtaggcttatatttttcaaaacttactttaat
aaaggttgttaaatgctttgacctctcttatagcccatcaactaaaggta
ggggaggaagaaaggttagtagaagtggacctgttgagaagtagttcttt
ggggcattctgatcatcattgtaaggatattagcagtccaattcatgagt
gtcaccaaacacaaatcagcagccatggttcaattcagaagaaacctcaa
agctccaaggattggccagagtccatagtagtggcgagaagctgctagaa
catcaccagttctttggtgcatttctctttacaaagtcaagacaagtaaa
gatctgtgaagaaagcaaggtgaactcatatcagaccatcatcattgaag
atgagcatcagtgaaactcaatgatgaccagcaaagaattgcaatgtgaa
ccaatgcagcagccactgagagtgaaggcaacatgcgaagagccagaatt
ttcttctgtcatgtcctttatataggctgccagcagaaacatgtggcctg
catttaagaaggacctttccacctcaaaagatccagatttaggtgagtct
ttccacttcaaatgattcagtcatgaacctctctcacaggtgtacccaga
tgcttggggtttagataattacagattagtaaagttgacaaccaagaaca
gccatcagagacacttagtcttccttatcccacaagatctatatggaaat
aatacctcccaactctactttgtgaagactcaggcataattaaacaaagt
ctgagaaaactgatataatttgatatgtgatgtcatatatcagctccctg
tccccccccccccccccccattaactgcgtagcagctacttctttgcttt
taagtcccgggttctttttcttttaatgagaatctattttactcttgaaa
ctagctggagaggaaaaaaactgaacaatgaaagttgactctttcaaaag
gtgcagctactgtgcatctgaggccgcttctgggacctttcagccgccca
tggatgtcacatgtattatacatagttcttttgttatggttatgcattcc
aggagttgatttcctggtaataaatgagcc
gaattcaaagtttaatcaatgcaaaatttcatctgattatctgagatagg
gaagaccagtggatgaaaaagaaacacaagcaccctgttaggaatttcaa
ttcttcataataagtgtttacttcataaagcatatggagacaaaatttga
tatatattttcaaccgtatagtaaaacaaattttaattttaatttttttg
aaagtgtaaatttaaagcactttcaggctagcttatccctgaatgagaag
aggagattggaatgtaatttttgcctatcacaatgaaatggagaaaggcc
ttactcaaggcaaaagtggccaagcctgagtaatgcataccagatgtatt
tcatgacccactccttttttatggaaaacaatcacataaaactcaaagaa
gcatttcactgaccacagctcctataaaccgcagcttcaccaagtggtca
ttgcaggcactgtgttagacaaagcccttgcaaaccttaatcacactgcc
aactgtgtcaaggcctactaagggtatacactaagagtatcagtcagagt
tctctagagggacagactttatagaatgaatttctataaagaatgaatat
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82454475_82455605
seq2: B6Ng01-016H02.b_43_1172 (reverse)

seq1  GGCTCATTTTATACCAGGAAATCAAACTTCCTGAGAATGGCAATAACATA  50
      |||||||||  ||||||||||||||   ||||| |||||   |||||   
seq2  GGCTCATTTATTACCAGGAAATCAA--CTCCTG-GAATG--CATAACCAT  45

seq1  AACAAAGAGAACCTATGTATATATACATTTGTGACAT-CATGGGCCGCGT  99
      |||||| |||| ||||||||| |||||  |||||||| ||||||| || |
seq2  AACAAA-AGAA-CTATGTATA-ATACA--TGTGACATCCATGGGCGGC-T  89

seq1  GAAAGGGTCCCAG-AGCGCCCTCAGATGCACAGTAGACTGCACCTTTTG-  147
      |||| |||||||| |||| ||||||||||||||||| |||||||||||| 
seq2  GAAA-GGTCCCAGAAGCGGCCTCAGATGCACAGTAG-CTGCACCTTTTGA  137

seq1  AAGAGTCAACTTTCATTGTTCAGTTTTTTTCCTCT-CAGCT-GTTTTCAG  195
      ||||||||||||||||||||||||||||||||||| ||||| ||||  ||
seq2  AAGAGTCAACTTTCATTGTTCAGTTTTTTTCCTCTCCAGCTAGTTTCAAG  187

seq1  AGTAAAATAGATTCTCATGAAA--GAAAAGAA-CCGGGAC-TAAAAGCAA  241
      |||||||||||||||||| |||   ||||||| ||||||| |||||||||
seq2  AGTAAAATAGATTCTCATTAAAAGAAAAAGAACCCGGGACTTAAAAGCAA  237

seq1  AG-AGTAGCTGCTACGCAGTTAAT--GGGGGGGGGGGGGGGGACAGGGAG  288
      || |||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AGAAGTAGCTGCTACGCAGTTAATGGGGGGGGGGGGGGGGGGACAGGGAG  287

seq1  CTGATATATGACATCACATATCAAATTATATCAGTTTTCTCAGACTTTGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATATGACATCACATATCAAATTATATCAGTTTTCTCAGACTTTGT  337

seq1  TTAATTATGCCTGAGTCTTCACAAAGTAGAGTTGGGAGGTATTATTTCCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGCCTGAGTCTTCACAAAGTAGAGTTGGGAGGTATTATTTCCA  387

seq1  TATAGATCTTGTGGGATAAGGAAGACTAAGTGTCTCTGATGGCTGTTCTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCTTGTGGGATAAGGAAGACTAAGTGTCTCTGATGGCTGTTCTT  437

seq1  GGTTGTCAACTTTACTAATCTGTAATTATCTAAACCCCAAGCATCTGGGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCAACTTTACTAATCTGTAATTATCTAAACCCCAAGCATCTGGGT  487

seq1  ACACCTGTGAGAGAGGTTCATGACTGAATCATTTGAAGTGGAAAGACTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTGAGAGAGGTTCATGACTGAATCATTTGAAGTGGAAAGACTCA  537

seq1  CCTAAATCTGGATCTTTTGAGGTGGAAAGGTCCTTCTTAAATGCAGGCCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCTGGATCTTTTGAGGTGGAAAGGTCCTTCTTAAATGCAGGCCA  587

seq1  CATGTTTCTGCTGGCAGCCTATATAAAGGACATGACAGAAGAAAATTCTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTGCTGGCAGCCTATATAAAGGACATGACAGAAGAAAATTCTG  637

seq1  GCTCTTCGCATGTTGCCTTCACTCTCAGTGGCTGCTGCATTGGTTCACAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCGCATGTTGCCTTCACTCTCAGTGGCTGCTGCATTGGTTCACAT  687

seq1  TGCAATTCTTTGCTGGTCATCATTGAGTTTCACTGATGCTCATCTTCAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCTTTGCTGGTCATCATTGAGTTTCACTGATGCTCATCTTCAAT  737

seq1  GATGATGGTCTGATATGAGTTCACCTTGCTTTCTTCACAGATCTTTACTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTCTGATATGAGTTCACCTTGCTTTCTTCACAGATCTTTACTT  787

seq1  GTCTTGACTTTGTAAAGAGAAATGCACCAAAGAACTGGTGATGTTCTAGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGACTTTGTAAAGAGAAATGCACCAAAGAACTGGTGATGTTCTAGC  837

seq1  AGCTTCTCGCCACTACTATGGACTCTGGCCAATCCTTGGAGCTTTGAGGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCGCCACTACTATGGACTCTGGCCAATCCTTGGAGCTTTGAGGT  887

seq1  TTCTTCTGAATTGAACCATGGCTGCTGATTTGTGTTTGGTGACACTCATG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAATTGAACCATGGCTGCTGATTTGTGTTTGGTGACACTCATG  937

seq1  AATTGGACTGCTAATATCCTTACAATGATGATCAGAATGCCCCAAAGAAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACTGCTAATATCCTTACAATGATGATCAGAATGCCCCAAAGAAC  987

seq1  TACTTCTCAACAGGTCCACTTCTACTAACCTTTCTTCCTCCCCTACCTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCAACAGGTCCACTTCTACTAACCTTTCTTCCTCCCCTACCTTT  1037

seq1  AGTTGATGGGCTATAAGAGAGGTCAAAGCATTTAACAACCTTTATTAAAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATGGGCTATAAGAGAGGTCAAAGCATTTAACAACCTTTATTAAAG  1087

seq1  TAAGTTTTGAAAAATATAAGCCTACATCCAGCATCATGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTGAAAAATATAAGCCTACATCCAGCATCATGAATTC  1130

seq1: chr3_82360112_82360722
seq2: B6Ng01-016H02.g_69_679

seq1  GAATTCAAAGTTTAATCAATGCAAAATTTCATCTGATTATCTGAGATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTTAATCAATGCAAAATTTCATCTGATTATCTGAGATAGG  50

seq1  GAAGACCAGTGGATGAAAAAGAAACACAAGCACCCTGTTAGGAATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGTGGATGAAAAAGAAACACAAGCACCCTGTTAGGAATTTCAA  100

seq1  TTCTTCATAATAAGTGTTTACTTCATAAAGCATATGGAGACAAAATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATAATAAGTGTTTACTTCATAAAGCATATGGAGACAAAATTTGA  150

seq1  TATATATTTTCAACCGTATAGTAAAACAAATTTTAATTTTAATTTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTCAACCGTATAGTAAAACAAATTTTAATTTTAATTTTTTTG  200

seq1  AAAGTGTAAATTTAAAGCACTTTCAGGCTAGCTTATCCCTGAATGAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAAATTTAAAGCACTTTCAGGCTAGCTTATCCCTGAATGAGAAG  250

seq1  AGGAGATTGGAATGTAATTTTTGCCTATCACAATGAAATGGAGAAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTGGAATGTAATTTTTGCCTATCACAATGAAATGGAGAAAGGCC  300

seq1  TTACTCAAGGCAAAAGTGGCCAAGCCTGAGTAATGCATACCAGATGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAGGCAAAAGTGGCCAAGCCTGAGTAATGCATACCAGATGTATT  350

seq1  TCATGACCCACTCCTTTTTTATGGAAAACAATCACATAAAACTCAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCCACTCCTTTTTTATGGAAAACAATCACATAAAACTCAAAGAA  400

seq1  GCATTTCACTGACCACAGCTCCTATAAACCGCAGCTTCACCAAGTGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCACTGACCACAGCTCCTATAAACCGCAGCTTCACCAAGTGGTCA  450

seq1  TTGCAGGCACTGTGTTAGACAAAGCCCTTGCAAACCTTAATCACACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCACTGTGTTAGACAAAGCCCTTGCAAACCTTAATCACACTGCC  500

seq1  AACTGTGTCAAGGCCTACTAAGGGTATACACTAAGAGTATCAGTCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTCAAGGCCTACTAAGGGTATACACTAAGAGTATCAGTCAGAGT  550

seq1  TCTCTAGAGGGACAGACTTTATAGAATGAATTTCTATAAAGAATGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGGGACAGACTTTATAGAATGAATTTCTATAAAGAATGAATAT  600

seq1  GTGTGTGTGTG  611
      |||||||||||
seq2  GTGTGTGTGTG  611