BAC Information

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BAC

Clone NameB6Ng01-016H22
Chromosome3 (Build37)
Map Location 41,059,076 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H22.bB6Ng01-016H22.g
ACCDH850440DH850441
length1,0301,080
definitionDH850440|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H22, 5' end.DH850441|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatatgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagtacaagccattgctatt
gtattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccatttagatttgaccttagtacaaggagatagaaatggatcgattctc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttccccactggatcattttagctcccttgtcaaagatcaagt
gaccataagtgtgttgattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattgctctttctttctttttcttttttttccctttctaatt
cgttgaagaattgagttggaattttgatggggatttcattgaagaagtac
aagacagtatggcagaaacggaatggtatgaaaggttaagagctctaaaa
aatgaaaatgtgcacaagaaaaaaagcccttccagagacttgagtcagag
gaagtgaaaaattttgaggataaatcctcatggagagaaaaagaaaagag
aaagttcaggaaaggaaaagcctttatccggtaaggactagagctttgaa
gctgatagtttaaagcagatgagctagctc
gaattctgtctggttattgagtcttaatgtggtttaggtaatagaaagac
tgtgccctcagagaatgagtttggcaatcttccttacgtttctattttgt
ggaatttacatcttctttaaaagtctgttagaattttatgctaaaaccat
ctggtcctgagctttttgttgtttttgctcttgttgtatttgttgttttg
agattatcatgatgtctttatttcctaaggaggtatgagtcttttagatt
gcttacctaatcttcatttctttttggtaagtggaatcaatctggaaatt
tgttcaattcgtttagattttccagttttgtgtaatacaggcttttgtaa
taaagcccaaacagtgtttggatttcctcagggtctattgttatgcccca
ttttcattttcttattttcttgttctggggtatggactccctgattttcc
tttactttgtctaagagtttctatatccttttgatttttcaaatgctcca
agtcttggttttgttgattttttttgtggtattcacttatttccaattaa
ttggttttttcccctgggtttgtatatttcttcccatctactcccctttg
gtgtctttatatcttgtgttctggagctttcaagtatgctgttaaattgc
tagcatgaaatgtatccattttctttaagacagcatttacaggcatgact
tttctcttggcagtgctttcattgtgtcccataagtttgggcatgttctg
ttttcctttttatcaatgaattacaaagtctttaacttcttccttccttc
cctctctatttctttctttctttctctcttctttccttctttgaccccat
gatcattgagtagataattattcgatccttttgagtttgtaggcattatg
attcctgaatctaataaatcccattttgaatgcatggtgctctgaaaaga
tggtaggtgttaaatccatcttcttctgtctctgctgtttcaattgttac
tgagttcatggtcacgttgggggaagttcttggagatgctgaatggaatg
cacgtgtgtggttttggtgtggtgaatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059076_41059737
seq2: B6Ng01-016H22.b_30_692 (reverse)

seq1  TCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAA  50
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  TCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGACCTAA  50

seq1  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGT  100
      | || |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACTGTACTACAGAGCAATTGTGATCAAAACTGCATGGTACTGGTATAGT  100

seq1  GACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCC  150
      |||||||||| |||||||||||| |||||||||||| |||| | ||||| 
seq2  GACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAGATGAATCA  150

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  200
      |||||| ||||||||||||||||| ||||||||||||||||  |||||||
seq2  ACACACTTATGGTCACTTGATCTTTGACAAGGGAGCTAAAATGATCCAGT  200

seq1  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  250
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  250

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  300
      ||||||||||||||| |||| |||||| | ||||||||||||||||||||
seq2  TCATGTAGAAGAATGAGAATCGATCCATTTCTATCTCCTTGTACTAAGGT  300

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  350
      ||||||||| ||||| ||||||| ||||||||||||||||||||||||||
seq2  CAAATCTAAATGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAAC  350

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  400
      |||||||||||||||| ||||||||||| ||||||||||  |||||||||
seq2  TTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAA  400

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGA  450
      ||||||||| ||| || ||||||||||||| |||||||||  ||||| ||
seq2  AAATTCCTGAATACAATAGCAATGGCTTGTACTGTAAGATCAAGAATCGA  450

seq1  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCG  500
       |||||||||||||| ||| |||||||||||||||| ||||||||||| |
seq2  TAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACTG  500

seq1  TCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTAT  549
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTAT  550

seq1  CCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAA  599
      || |||||| |||||||||||||||||||||||||| |||||||||||||
seq2  CCCAAATCATATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAA  600

seq1  GGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  650

seq1  TAAACAAAGAATT  662
      | |||||||||||
seq2  TGAACAAAGAATT  663