BAC Information

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BAC

Clone NameB6Ng01-016I07
Chromosome3 (Build37)
Map Location 84,824,286 - 84,973,376
singlet/doubletdoublet
Overlap genenone
Upstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I07.bB6Ng01-016I07.g
ACCDH850458DH850459
length1,1381,057
definitionDH850458|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I07, 5' end.DH850459|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,824,286 - 84,825,444)(84,972,306 - 84,973,376)
sequence
gaattcaattagtcactggttgccatgccaatgcaagcatcacccttcca
cctactccaccatcaacacatttgaataagtaacaatgataataccatgc
actaaaaaaatgctatttttaaaaaaacttaaatgtacttctgtcaaaag
tctggtttttcagaaataattgctgtaggccagataaagatttgcatagg
attcctaaaatgggctgaatatcatcacagaagagaaatatctgtgatta
taaagacagtccttgagattgggggacttgggatgggaaggcaagcttct
cctaatattcagaggtgatggagatgaagttgggacagatagctctcact
tcagcaccaccctcctcacaccctgccgcctgacccaggtccccagtctt
caccataccctacccaagtgttaattgatatttgtaatttgatgctttgt
ggctacagctttaacaagtgtattttagggacctcagaattagtgtctca
gaatcgattctgagaaaaccattactgacatataataagatttataatag
aaaaagcaaaaataaaaccaaaacaaaaaaatagaagtagtctaaaatat
tccagccattgtgtacccgcatgctaggatgtggctgttaaaaatgaggt
tgtcagagaacagctgatgatgcaggaaaatggtatgtattgttaagtgg
agcaagcaggttacagagctgggaatttgatgaaatccaggtttgatgta
tgctattttatgcaaatatatgcataggaaaaactagtagtgtgttactc
taaaatgataataatggttatttctggatagcaggatcacaggtgacttt
tgtttttcttttgtgccttcctatatcttcaaaaccacttaagataattt
tatatttcttctataactatataatatccagtcagtgttcttcacacact
gagggctgttctgagtttgttgcagagagtaggggatgcaaggaggactg
cacttggcctctgtgtctagtccctgtcttactcttggatccgcagtcat
gtcttgagggatcatcatgctgaatgacttggctctctaggatactatct
cctggaggaggcatttaactgggttattctggcaccta
gaattccaggacagccagggctacacagagaacccctgtctcaaacagtc
aaacaaacaaacaaacaaacagaagcaaaatggtttcgttgattcataca
aggaacccaaattctagtaactgatgagcatagcatggcatgtcgtggcg
ttctttctccctatattcctgttggcagagcctggggtttaaggtggttt
tctacccgagtgtaggaacacatggactggaacgtgaaacacctggagac
acttgcttaaagaacttctgggaaaattgctgttaaaaagaaatacattt
gggtttctttcattgactgttcccaggcttttacaggatactgggaattg
tggtggccatcttgccatcttgctagtaatgcaaaaggcaaaaggcaaga
aaggtgaactaggaattgtgagaggatattgctgaaccagcaaatttacc
agctttggtatttcctttcgtgagccatgacaaactcttattcagccatt
tgagatgggctgcctgaagtttgaagcagtaagcgttctgatgtagtgac
acacagatggactaacattgacaaattattttaaatacttatttttgtag
gctttaatttgtaacttttatttatgaggcaccaaaggcaataatagtag
agaatcgcagagacccacgatttgaaatggggatttagatgtaaatctaa
gttgtatcagtgtaagcatccaatttagtttatatttagatatgattgta
taataccgagggaagtctcattcccacagatgagtaactataaacgtaat
agtttaaagctttttcattttttgcttttcattcttaagataattttccc
ttactagtgatagcagggacaactttattccagtattcaggctcacacac
ataaactagagtgataactaaagccatgcactgattgttaaatatacata
ttcgatacatttagtaacatatagcattttaacgagatctcaaacccaaa
gatcttcattgttctagatcctcagaaccaacttttaaactttgcttaag
taatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84824286_84825444
seq2: B6Ng01-016I07.b_42_1179

seq1  GAATTCAATTAGTCACTGGTTGCCATGCCAATGCAAGCATCACCCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGTCACTGGTTGCCATGCCAATGCAAGCATCACCCTTCCA  50

seq1  CCTACTCCACCATCAACACATTTGAATAAGTAACAATGATAATACCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCACCATCAACACATTTGAATAAGTAACAATGATAATACCATGC  100

seq1  ACTAAAAAAATGCTATTTTTAAAAAAACTTAAATGTACTTCTGTCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAATGCTATTTTTAAAAAAACTTAAATGTACTTCTGTCAAAAG  150

seq1  TCTGGTTTTTCAGAAATAATTGCTGTAGGCCAGATAAAGATTTGCATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTTCAGAAATAATTGCTGTAGGCCAGATAAAGATTTGCATAGG  200

seq1  ATTCCTAAAATGGGCTGAATATCATCACAGAAGAGAAATATCTGTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAAATGGGCTGAATATCATCACAGAAGAGAAATATCTGTGATTA  250

seq1  TAAAGACAGTCCTTGAGATTGGGGGACTTGGGATGGGAAGGCAAGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGTCCTTGAGATTGGGGGACTTGGGATGGGAAGGCAAGCTTCT  300

seq1  CCTAATATTCAGAGGTGATGGAGATGAAGTTGGGACAGATAGCTCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTCAGAGGTGATGGAGATGAAGTTGGGACAGATAGCTCTCACT  350

seq1  TCAGCACCACCCTCCTCACACCCTGCCGCCTGACCCAGGTCCCCAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCACCCTCCTCACACCCTGCCGCCTGACCCAGGTCCCCAGTCTT  400

seq1  CACCATACCCTACCCAAGTGTTAATTGATATTTGTAATTTGATGCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACCCTACCCAAGTGTTAATTGATATTTGTAATTTGATGCTTTGT  450

seq1  GGCTACAGCTTTAACAAGTGTATTTTAGGGACCTCAGAATTAGTGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGCTTTAACAAGTGTATTTTAGGGACCTCAGAATTAGTGTCTCA  500

seq1  GAATCGATTCTGAGAAAACCATTACTGACATATAATAAGATTTATAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATTCTGAGAAAACCATTACTGACATATAATAAGATTTATAATAG  550

seq1  AAAAAGCAAAAATAAAACCAAAACAAAAAAATAGAAGTAGTCTAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAAAATAAAACCAAAACAAAAAAATAGAAGTAGTCTAAAATAT  600

seq1  TCCAGCCATTGTGTACCCGCATGCTAGGATGTGGCTGTTAAAAATGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATTGTGTACCCGCATGCTAGGATGTGGCTGTTAAAAATGAGGT  650

seq1  TGTCAGAGAACAGCTGATGATGCAGGAAAATGGTATGTATTGTTAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGAACAGCTGATGATGCAGGAAAATGGTATGTATTGTTAAGTGG  700

seq1  AGCAAGCAGGTTACAGAGCTGGGAATTTGATGAAATCCAGGTTTGATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGGTTACAGAGCTGGGAATTTGATGAAATCCAGGTTTGATGTA  750

seq1  TGCTATTTTATGCAAATATATGCATAGGAAAAACTAGTAGTGTGTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTATGCAAATATATGCATAGGAAAAACTAGTAGTGTGTTACTC  800

seq1  TAAAATGATAATAATGGTTATTTCTGGATAGCAGGATCACAGGTGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATAATAATGGTTATTTCTGGATAGCAGGATCACAGGTGACTTT  850

seq1  TGTTTTTCTTTTGTGCCTTCCTATATCTTCAAAAACCACTTAAGATAATT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTTTTCTTTTGTGCCTTCCTATATCTTC-AAAACCACTTAAGATAATT  899

seq1  TTATATTTCTTCTATAACTATATAATATCCAGTCAGTGTTCTTCACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTTCTATAACTATATAATATCCAGTCAGTGTTCTTCACACAC  949

seq1  TGAGGGCTGTTCTGAGTTTGTTGCAGGAGAGTAGGGGAATGCAGGGAGGA  1000
      ||||||||||||||||||||||||| ||||||||||| ||||| ||||||
seq2  TGAGGGCTGTTCTGAGTTTGTTGCA-GAGAGTAGGGG-ATGCAAGGAGGA  997

seq1  CTGCACTTGGGCCTTCTGTGTCTAGTCCCCTGTCTTACTTCTTGGATCCC  1050
      ||||||||||  | |||||||||||| ||||||||||| |||||||||| 
seq2  CTGCACTTGG--CCTCTGTGTCTAGT-CCCTGTCTTAC-TCTTGGATCC-  1042

seq1  GGCAGTCATGTCTGAGGGGATCAAGTCATGCCTGAGATGACCTGGGCTCT  1100
       ||||||||||||   |||||||  ||||| |||| |||| || ||||||
seq2  -GCAGTCATGTCTTGAGGGATCA--TCATG-CTGA-ATGA-CTTGGCTCT  1086

seq1  CAAGGGATTAACTATCTCCCTGAGGAGGCATTTTTACATGTGTTATTCTG  1150
      | | ||||  |||||||||  |||||||||  ||||  || |||||||||
seq2  CTA-GGAT--ACTATCTCCTGGAGGAGGCA--TTTAACTGGGTTATTCTG  1131

seq1  GCCAACCTA  1159
      ||  |||||
seq2  GC--ACCTA  1138

seq1: chr3_84972306_84973376
seq2: B6Ng01-016I07.g_66_1122 (reverse)

seq1  ATCA-TACTTAAGGCAGAGGTTTTAAAAGTGTGTTCTGAGGAATCTAAGA  49
      |||| ||||||| ||| ||  |||||||||  ||||||||| |||| |||
seq2  ATCATTACTTAA-GCAAAG--TTTAAAAGTTGGTTCTGAGG-ATCT-AGA  45

seq1  GACAATGAAGATCTTTTGGGTTTGAGAATCCTTGGTTTAAAATGCTATAT  99
       |||||||||||| |||||||||||||   || |  ||||||||||||||
seq2  -ACAATGAAGATC-TTTGGGTTTGAGA--TCTCG--TTAAAATGCTATAT  89

seq1  GTTACTAAATGTAATCGAATAATGTATATTTAACAATCAGTGCATTGGCT  149
      |||||||||||| ||||||| ||||||||||||||||||||||| |||||
seq2  GTTACTAAATGT-ATCGAAT-ATGTATATTTAACAATCAGTGCA-TGGCT  136

seq1  TTAGTTATCACTCTAGTTTTATGTGTGTGAGCCTGAATACTGGAATAAAG  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAGTTATCACTCTAG-TTTATGTGTGTGAGCCTGAATACTGGAATAAAG  185

seq1  TTGTCCCTGCTATCACTAGTAAGGGAAAATTATCTTAAGAATGAAAAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGCTATCACTAGTAAGGGAAAATTATCTTAAGAATGAAAAGCA  235

seq1  AAAAATGAAAAAGCTTTAAACTATTACGTTTATAGTTACTCATCTGTGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAAGCTTTAAACTATTACGTTTATAGTTACTCATCTGTGGG  285

seq1  AATGAGACTTCCCTCGGTATTATACAATCATATCTAAATATAAACTAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACTTCCCTCGGTATTATACAATCATATCTAAATATAAACTAAAT  335

seq1  TGGATGCTTACACTGATACAACTTAGATTTACATCTAAATCCCCATTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTTACACTGATACAACTTAGATTTACATCTAAATCCCCATTTCA  385

seq1  AATCGTGGGTCTCTGCGATTCTCTACTATTATTGCCTTTGGTGCCTCATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGGGTCTCTGCGATTCTCTACTATTATTGCCTTTGGTGCCTCATA  435

seq1  AATAAAAGTTACAAATTAAAGCCTACAAAAATAAGTATTTAAAATAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTTACAAATTAAAGCCTACAAAAATAAGTATTTAAAATAATTT  485

seq1  GTCAATGTTAGTCCATCTGTGTGTCACTACATCAGAACGCTTACTGCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTTAGTCCATCTGTGTGTCACTACATCAGAACGCTTACTGCTTC  535

seq1  AAACTTCAGGCAGCCCATCTCAAATGGCTGAATAAGAGTTTGTCATGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGGCAGCCCATCTCAAATGGCTGAATAAGAGTTTGTCATGGCT  585

seq1  CACGAAAGGAAATACCAAAGCTGGTAAATTTGCTGGTTCAGCAATATCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAGGAAATACCAAAGCTGGTAAATTTGCTGGTTCAGCAATATCCT  635

seq1  CTCACAATTCCTAGTTCACCTTTCTTGCCTTTTGCCTTTTGCATTACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATTCCTAGTTCACCTTTCTTGCCTTTTGCCTTTTGCATTACTAG  685

seq1  CAAGATGGCAAGATGGCCACCACAATTCCCAGTATCCTGTAAAAGCCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCAAGATGGCCACCACAATTCCCAGTATCCTGTAAAAGCCTGG  735

seq1  GAACAGTCAATGAAAGAAACCCAAATGTATTTCTTTTTAACAGCAATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCAATGAAAGAAACCCAAATGTATTTCTTTTTAACAGCAATTTT  785

seq1  CCCAGAAGTTCTTTAAGCAAGTGTCTCCAGGTGTTTCACGTTCCAGTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGTTCTTTAAGCAAGTGTCTCCAGGTGTTTCACGTTCCAGTCCA  835

seq1  TGTGTTCCTACACTCGGGTAGAAAACCACCTTAAACCCCAGGCTCTGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTACACTCGGGTAGAAAACCACCTTAAACCCCAGGCTCTGCCA  885

seq1  ACAGGAATATAGGGAGAAAGAACGCCACGACATGCCATGCTATGCTCATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATATAGGGAGAAAGAACGCCACGACATGCCATGCTATGCTCATC  935

seq1  AGTTACTAGAATTTGGGTTCCTTGTATGAATCAACGAAACCATTTTGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAGAATTTGGGTTCCTTGTATGAATCAACGAAACCATTTTGCTT  985

seq1  CTGTTTGTTTGTTTGTTTGTTTGACTGTTTGAGACAGGGGTTCTCTGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTGTTTGTTTGTTTGACTGTTTGAGACAGGGGTTCTCTGTGT  1035

seq1  AGCCCTGGCTGTCCTGGAATTC  1071
      ||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAATTC  1057