BAC Information

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BAC

Clone NameB6Ng01-016I12
Chromosome3 (Build37)
Map Location 142,663,767 - 142,861,228
singlet/doubletdoublet
Overlap geneLOC100039883
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I12.bB6Ng01-016I12.g
ACCDH850468DH850469
length1,1901,169
definitionDH850468|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I12, 5' end.DH850469|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,860,029 - 142,861,228)(142,663,767 - 142,664,939)
sequence
gaattccaaaaacagtcatgagcctcctaagcttttttaataatcttaaa
tcaatagaatttctccaaagagcagagtagttaccattccattatggttc
agtatggtttaatttaaatgattaaacgtactgttttaataagatggatt
tccacattaaaaataccttttatccccttctgacccatagctccctttcc
ctacatgggaatgaaagcctaattcccagccatgacaattattttgctat
ttctttctgacttaagggatatatcgagaagtttagtttcatttagttat
tcaagccaatttgaaaaggccccccagctcacaagtatctgcagtcttac
cataaatcattttattccattggctaacttccgtagccaagtgaaagaag
gtcttctaaggagcgtgccagcataacagccataacccaagactggctct
gtcaaaccatgaagtgtagacattctattgacaagcatcatgtcaggcca
agagaaataagcagcaacatgtgcagattcaaggatgttcttgggactgg
agagagagtgctcagcagttaaaactactcactgctcttgcagaggaccc
aggttcaaatctcatgtttgataactggcgagtgcatataactgtaattc
cagaggctgatgttctcttctggcctctacaagcaaatgcatttgtgttg
tgtacataaactcatgcaggtatacacatacatataacttaaaaatattt
ataaagaatttacttaactgctttacccaaattgcctggggaaaaagcca
attgtttttctgtcagtgcatattagtacctgtaagtaatagacaatgaa
aggccagcaatctctggcaagagaagaaaaatggaaatgtaaggcagggt
atcacaacatggcagaacatagtggaacgatactgtcaatcaaatacata
aaaccatcaaacttctgagcctactgagaatgcatgggaaggatattcag
aaacaatggaccatgacagagagatgttcctgtaattagctaattgtatt
acctattctttatcaccccaaagtgaacagtgaacaatttcaggtgttct
gcaaatcaccaagttttatacagcaatccttcactcaaatttggtaatat
ctgtctccctcctaatagaacaattgctacggatcactct
gaattctttttttttcggtgggggaagaaaaggattaaaaaattattaaa
ggacatacatttgtgtagctgttcacagtttatgagagggtcttttgagg
ttatttgatgatctagctaagtacatttattcaaattcaaaataagaaaa
taggatctgattatttgaacttgctgatttagggagaaataattcattta
gatgcaccacaaattaatcttctttctaagaatcagaataaacaattgaa
attccattttgcagtgagctgtttagtaatgtctgtggggacccatttgt
ttatttgcctctgtatgatagtcttaggtaaacagcacacagccatatct
atgtgtgtctgggtagccttccacgtttttattatgcaacttagaaatga
aagggctaaatctgcagtacttagcagaacggtgaaatcacacacagtgt
aaaacactcccccaccttcttgccaaggagccttggcctttgaagaccat
ccctgaacaatcagtcccttctgtatgcctttcattcttaccgtattcca
ggctccccccttcaatgttttgtttctctgggctaaatttcatctcagtt
gattgcccaattcacttttcattcagtcataattgttttttgaattgtct
taaattctccaatggattatgacaatttgaaaattaacaatggtgcctta
attgcatggggccttgcgatccacaaaaccctgttggtggatggttccca
cctcccctctatccacctgtaattttttttccaatgtgaaaaggtaggaa
cacatacacaagaataaaacacacgtggttgtgatttataaaaatacgtg
actttctatattataactcaccacagacccttgtaagaccatagcaacaa
tgaagaaaaatctctctctctctctccatctctccctctctttctccctc
tgtctttctatccctctcttttttttctctcttttcttcctattttttaa
aaaccagggtcttactatgttaatttctctggttgttctgaacctttcat
gtagtcctgattagcccagaactcacagagttctttgcgcgtgccaaggg
ctgggataaaggcatgaggccaacacattgaatctcatcttcttttgtgt
ggcaggaaacatttaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142860029_142861228
seq2: B6Ng01-016I12.b_43_1232 (reverse)

seq1  AGAGATGATCTGTAGCAATAGGTTTCTATATAGGA-GGAGACAGATATAA  49
      |||| ||||| |||||||| |  |||||| ||||| |||||||||||| |
seq2  AGAG-TGATCCGTAGCAATTG--TTCTAT-TAGGAGGGAGACAGATATTA  46

seq1  CAAAATTGAGGTGAGTGA--TATGCCTGTATAAAACCTTGGTGATTGTGC  97
      | |||||    |||||||   ||  |||||||||| |||||||||| |||
seq2  CCAAATT----TGAGTGAAGGATTGCTGTATAAAA-CTTGGTGATT-TGC  90

seq1  AGAACACCCTGAATTTGTTCACTGTTCACTTTGGGGTGATAAAGAATAGG  147
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAACA-CCTGAAATTGTTCACTGTTCACTTTGGGGTGATAAAGAATAGG  139

seq1  TAATTACAA-TAGCTAATTACAGGAACATCTCTCTTGTTCATGGTCCATT  196
      ||| ||||| |||||||||||||||||||||||||   ||||||||||||
seq2  TAA-TACAATTAGCTAATTACAGGAACATCTCTCT--GTCATGGTCCATT  186

seq1  GTTTCTGAATATCCTT-CCATGCATTCTTCAGTAGGCTCAGAAGTTTGAT  245
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  GTTTCTGAATATCCTTCCCATGCATTC-TCAGTAGGCTCAGAAGTTTGAT  235

seq1  GGTTTTATGTATTTGATTGACAGTATCGTTCCACTATGTTCTGCCATGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGTATTTGATTGACAGTATCGTTCCACTATGTTCTGCCATGTT  285

seq1  GTGATACCCTGCCTTACATTTCCATTTTTCTTCTCTTGCCAGAGATTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCCTGCCTTACATTTCCATTTTTCTTCTCTTGCCAGAGATTGCT  335

seq1  GGCCTTTCATTGTCTATTACTTACAGGTACTAATATGCACTGACAGAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCATTGTCTATTACTTACAGGTACTAATATGCACTGACAGAAAA  385

seq1  ACAATTGGCTTTTTCCCCAGGCAATTTGGGTAAAGCAGTTAAGTAAATTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGGCTTTTTCCCCAGGCAATTTGGGTAAAGCAGTTAAGTAAATTC  435

seq1  TTTATAAATATTTTTAAGTTATATGTATGTGTATACCTGCATGAGTTTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATATTTTTAAGTTATATGTATGTGTATACCTGCATGAGTTTAT  485

seq1  GTACACAACACAAATGCATTTGCTTGTAGAGGCCAGAAGAGAACATCAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAACACAAATGCATTTGCTTGTAGAGGCCAGAAGAGAACATCAGC  535

seq1  CTCTGGAATTACAGTTATATGCACTCGCCAGTTATCAAACATGAGATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATTACAGTTATATGCACTCGCCAGTTATCAAACATGAGATTTG  585

seq1  AACCTGGGTCCTCTGCAAGAGCAGTGAGTAGTTTTAACTGCTGAGCACTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGTCCTCTGCAAGAGCAGTGAGTAGTTTTAACTGCTGAGCACTC  635

seq1  TCTCTCCAGTCCCAAGAACATCCTTGAATCTGCACATGTTGCTGCTTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGTCCCAAGAACATCCTTGAATCTGCACATGTTGCTGCTTATT  685

seq1  TCTCTTGGCCTGACATGATGCTTGTCAATAGAATGTCTACACTTCATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCCTGACATGATGCTTGTCAATAGAATGTCTACACTTCATGGT  735

seq1  TTGACAGAGCCAGTCTTGGGTTATGGCTGTTATGCTGGCACGCTCCTTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGCCAGTCTTGGGTTATGGCTGTTATGCTGGCACGCTCCTTAG  785

seq1  AAGACCTTCTTTCACTTGGCTACGGAAGTTAGCCAATGGAATAAAATGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTCTTTCACTTGGCTACGGAAGTTAGCCAATGGAATAAAATGAT  835

seq1  TTATGGTAAGACTGCAGATACTTGTGAGCTGGGGGGCCTTTTCAAATTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAAGACTGCAGATACTTGTGAGCTGGGGGGCCTTTTCAAATTGG  885

seq1  CTTGAATAACTAAATGAAACTAAACTTCTCGATATATCCCTTAAGTCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAACTAAATGAAACTAAACTTCTCGATATATCCCTTAAGTCAGA  935

seq1  AAGAAATAGCAAAATAATTGTCATGGCTGGGAATTAGGCTTTCATTCCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGCAAAATAATTGTCATGGCTGGGAATTAGGCTTTCATTCCCA  985

seq1  TGTAGGGAAAGGGAGCTATGGGTCAGAAGGGGATAAAAGGTATTTTTAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAAAGGGAGCTATGGGTCAGAAGGGGATAAAAGGTATTTTTAAT  1035

seq1  GTGGAAATCCATCTTATTAAAACAGTACGTTTAATCATTTAAATTAAACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCCATCTTATTAAAACAGTACGTTTAATCATTTAAATTAAACC  1085

seq1  ATACTGAACCATAATGGAATGGTAACTACTCTGCTCTTTGGAGAAATTCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAACCATAATGGAATGGTAACTACTCTGCTCTTTGGAGAAATTCT  1135

seq1  ATTGATTTAAGATTATTAAAAAAGCTTAGGAGGCTCATGACTGTTTTTGG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTAAGATTATTAAAAAAGCTTAGGAGGCTCATGACTGTTTTTGG  1185

seq1  AATTC  1200
      |||||
seq2  AATTC  1190

seq1: chr3_142663767_142664939
seq2: B6Ng01-016I12.g_66_1234

seq1  GAATTCTTTTTTTTTCGGTGGGGGAAGAAAAGGATTAAAAAATTATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTCGGTGGGGGAAGAAAAGGATTAAAAAATTATTAAA  50

seq1  GGACATACATTTGTGTAGCTGTTCACAGTTTATGAGAGGGTCTTTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACATTTGTGTAGCTGTTCACAGTTTATGAGAGGGTCTTTTGAGG  100

seq1  TTATTTGATGATCTAGCTAAGTACATTTATTCAAATTCAAAATAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATGATCTAGCTAAGTACATTTATTCAAATTCAAAATAAGAAAA  150

seq1  TAGGATCTGATTATTTGAACTTGCTGATTTAGGGAGAAATAATTCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGATTATTTGAACTTGCTGATTTAGGGAGAAATAATTCATTTA  200

seq1  GATGCACCACAAATTAATCTTCTTTCTAAGAATCAGAATAAACAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCACAAATTAATCTTCTTTCTAAGAATCAGAATAAACAATTGAA  250

seq1  ATTCCATTTTGCAGTGAGCTGTTTAGTAATGTCTGTGGGGACCCATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTTGCAGTGAGCTGTTTAGTAATGTCTGTGGGGACCCATTTGT  300

seq1  TTATTTGCCTCTGTATGATAGTCTTAGGTAAACAGCACACAGCCATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCCTCTGTATGATAGTCTTAGGTAAACAGCACACAGCCATATCT  350

seq1  ATGTGTGTCTGGGTAGCCTTCCACGTTTTTATTATGCAACTTAGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTGGGTAGCCTTCCACGTTTTTATTATGCAACTTAGAAATGA  400

seq1  AAGGGCTAAATCTGCAGTACTTAGCAGAACGGTGAAATCACACACAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTAAATCTGCAGTACTTAGCAGAACGGTGAAATCACACACAGTGT  450

seq1  AAAACACTCCCCCACCTTCTTGCCAAGGAGCCTTGGCCTTTGAAGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCCCCCACCTTCTTGCCAAGGAGCCTTGGCCTTTGAAGACCAT  500

seq1  CCCTGAACAATCAGTCCCTTCTGTATGCCTTTCATTCTTACCGTATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACAATCAGTCCCTTCTGTATGCCTTTCATTCTTACCGTATTCCA  550

seq1  GGCTCCCCCCTTCAATGTTTTGTTTCTCTGGGCTAAATTTCATCTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCCCTTCAATGTTTTGTTTCTCTGGGCTAAATTTCATCTCAGTT  600

seq1  GATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCT  650

seq1  TAAATTCTCCAATGGATTATGACAATTTGAAAATTAACAATGGTGCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCCAATGGATTATGACAATTTGAAAATTAACAATGGTGCCTTA  700

seq1  ATTGCATGGGGCCTTGCGATCCACAAAACCCTGTTGGTGGATGGTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGGGGCCTTGCGATCCACAAAACCCTGTTGGTGGATGGTTCCCA  750

seq1  CCTCCCCTCTATCCACCTGTAA-TTTTTTTCCAATGTGAAAAGGTAGGAA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCCCCTCTATCCACCTGTAATTTTTTTTCCAATGTGAAAAGGTAGGAA  800

seq1  CACATACACAAGAATAAAACACACGTGGTTGTGATTTATAAAAATACGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACAAGAATAAAACACACGTGGTTGTGATTTATAAAAATACGTG  850

seq1  ACTTTCTAATATTTATAACTCAACCACAGACCCTTGTAAGACCATAGCAA  899
      ||||||| ||| ||||||||| ||||||||||||||||||||||||||||
seq2  ACTTTCT-ATA-TTATAACTC-ACCACAGACCCTTGTAAGACCATAGCAA  897

seq1  CAATGAAGAAAAATCTCTCTCTCTCTCTCCATCTCTCCCTCTCTTTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGAAAAATCTCTCTCTCTCTCTCCATCTCTCCCTCTCTTTCTCC  947

seq1  CTCTGTCTTTCTATCCCTCTCTTTTTTTTCTCTCTTTTCTTCCTATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTTCTATCCCTCTCTTTTTTTTCTCTCTTTTCTTCCTATTTTT  997

seq1  TAAAAAACCAGGGTCTTACTATGTATATTTCTCTGGTTGTTCTGAACCTT  1049
      | ||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  T-AAAAACCAGGGTCTTACTATGTTAATTTCTCTGGTTGTTCTGAACCTT  1046

seq1  TCTATGTAGTCCTGATTAGCCTAGAACTCACAGAGTTC-TTGC-CGTG-C  1096
      || |||||||||||||||||| |||||||||||||||| |||| |||| |
seq2  TC-ATGTAGTCCTGATTAGCCCAGAACTCACAGAGTTCTTTGCGCGTGCC  1095

seq1  AAAGGCTGGGATTAAAGGCATG-TGCCAACACATTGAGTCCTCAGTCTTC  1145
      || |||||||| ||||||||||  ||||||||||||| | |||| |||||
seq2  AAGGGCTGGGA-TAAAGGCATGAGGCCAACACATTGAAT-CTCA-TCTTC  1142

seq1  TTT--TGTGGCAGTGAAAACATTTACAGGG  1173
      |||  |||||||  | ||||||||| ||||
seq2  TTTTGTGTGGCA--GGAAACATTTA-AGGG  1169