BAC Information

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BAC

Clone NameB6Ng01-016L14
Chromosome3 (Build37)
Map Location 79,841,436 - 80,015,068
singlet/doubletdoublet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L14.bB6Ng01-016L14.g
ACCDH850604DH850605
length1,135203
definitionDH850604|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L14, 5' end.DH850605|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,841,436 - 79,842,444)(80,014,866 - 80,015,068)
sequence
gaattcagtattgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatttaccatcactaaggaagaaagaagtttc
tgaccgtaggagaaaccagaatagatatttagaattatagctgagttaca
cctatatacaggaatttacaatggtttaggaagtagatccagctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
gttagaaccatgacttggtgtgaaagcccttgccctaggagtgaaaagtt
ctcacacctggcgtctaagactatagctgaccttagatagggctgacttt
gtctcagttattttattgcccagttcctgccagtctttgcgttttcattc
ctctgttctgtgtaagagtcattaagcatccggttacctcatttgtacct
tgtgggtatgtcacccaactaccttgttgtcttctgcataaaaagtctga
tgttcgatttgaaaaattacattcagattccacacaaactctcctgcgtg
tgtgtctgtctgtcatccatccacgctttgcccacccgcgtcgagagacc
ccgttccacgcagacactgggacctagaaggtctgcggcactaatataag
taagtaatgcactattttataaattgtacattttgcttctcctcatactg
agcatgtagcaatgtaataaatgttcactgaaagagttagtgtttgtttt
tttaatagcacttttagaacacgattctctactgagcagggtaccattcc
atacaaatctgttaagtacaggagagaaaatattaaaaccaagttcaagg
tttagatttgacttaaagaatactttcctaaattgttccctcaagtactg
tggccaaagatttttcataccttatataaatgtcaaaacatgtggactat
gggaaccatggattgttagtacagaaaataaaagaacttgaacgtgttct
gaaaattatgtgaatagagcgaagaatttttatctatgatttaagaagtt
gcatagttataaactaaaactagttcattatgtaaaaattaataccgagt
agtctgttttgttacttcaaaataataaattgaga
tttaagaaagtgagaagacaggaagtcctccaccttggccttacgatact
catagaaaaagcaagtctgttgatgattggcttgggctgaatggatgtga
acctgtgttttctaaagggagaaactactctgaagcacacagattcttca
gaaagtgactcaggaaggaaggaaggaaggaaggaaggaagggagggagg
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79841436_79842444
seq2: B6Ng01-016L14.b_185_1177

seq1  GAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCCAG  50

seq1  CTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGA  100

seq1  ACTCCCTAGTTAGAACCATGACTTGGTGTGAAAGCCCTTGCCCTAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAGTTAGAACCATGACTTGGTGTGAAAGCCCTTGCCCTAGGAGT  150

seq1  GAAAAGTTCTCACACCTGGCGTCTAAGACTATAGCTGACCTTAGATAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCTCACACCTGGCGTCTAAGACTATAGCTGACCTTAGATAGGG  200

seq1  CTGACTTTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGT  250

seq1  TTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCAT  300

seq1  TTGTACCTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATAAA  350

seq1  AAGTCTGATGTTCGATTTGAAAAATTACATTCAGATTCCACACAAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGATGTTCGATTTGAAAAATTACATTCAGATTCCACACAAACTCT  400

seq1  CCTGCGTGTGTGTCTGTCTGTCATCCATCCACGCTTTGCCCACCCGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGTGTGTCTGTCTGTCATCCATCCACGCTTTGCCCACCCGCGTC  450

seq1  GAGAGACCCCGTTCCACGCAGACACTGGGACCTAGAAGGTCTGCGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCCGTTCCACGCAGACACTGGGACCTAGAAGGTCTGCGGCACT  500

seq1  AATATAAGTAAGTAATGCACTA-TTTATAAATTGTACATTTTGCTTCTCC  549
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATATAAGTAAGTAATGCACTATTTTATAAATTGTACATTTTGCTTCTCC  550

seq1  TCATACTGAGCATGTAGCAATGTAATAAATGTTCACTGAAAGAGTTAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGAGCATGTAGCAATGTAATAAATGTTCACTGAAAGAGTTAGTG  600

seq1  TTTGTTTTTTTAATAGCACTTTTAGAACACGATTCTCTACTGAGCAGGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTAATAGCACTTTTAGAACACGATTCTCTACTGAGCAGGGT  650

seq1  ACCATTCCATACAAATCTGTTAAGTACAGGAGAGAAAATATTAAAACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCATACAAATCTGTTAAGTACAGGAGAGAAAATATTAAAACCAA  700

seq1  GTTCAAGGTTTAGATATGACTTAAAGAATACTTTCCT-AATTGTTCCCTC  748
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GTTCAAGGTTTAGATTTGACTTAAAGAATACTTTCCTAAATTGTTCCCTC  750

seq1  AGGTACTGTGGCCAAGGA-TCTTCATACCTTATATAAATGTCAAAACATG  797
      | ||||||||||||| || | |||||||||||||||||||||||||||||
seq2  AAGTACTGTGGCCAAAGATTTTTCATACCTTATATAAATGTCAAAACATG  800

seq1  TGGACTATGGGAACCATGGA-TGTTAGTACAGAAAAATAAAAAGAACTTG  846
      |||||||||||||||||||| |||||||||||||||   |||||||||||
seq2  TGGACTATGGGAACCATGGATTGTTAGTACAGAAAA--TAAAAGAACTTG  848

seq1  AACGGTGTTCCTGAAAATTATGGTGAATAGAGCAGAGAATTTTTATCTAT  896
      ||| ||||| ||||||||||| |||||||||||  |||||||||||||||
seq2  AAC-GTGTT-CTGAAAATTAT-GTGAATAGAGCGAAGAATTTTTATCTAT  895

seq1  GGATTTTAAAGAAGTTGCATAGTTATTAAACTAAACATAAGTTCAAATTA  946
       |||||  ||||||||||||||||| ||||||||| |  |||||  ||||
seq2  -GATTT--AAGAAGTTGCATAGTTA-TAAACTAAA-ACTAGTTC--ATTA  938

seq1  TTGTAAAAATTATTAACACAAAGGAAGGCCTGTTTTGTTACTTACAAAAA  996
       |||||||   ||||| ||  || |  | ||||||||||||||   ||||
seq2  -TGTAAAA---ATTAATACCGAGTA--GTCTGTTTTGTTACTT--CAAAA  980

seq1  TAAATAAATGAGA  1009
      |||  || |||||
seq2  TAATAAATTGAGA  993

seq1: chr3_80014866_80015068
seq2: B6Ng01-016L14.g_75_277 (reverse)

seq1  CTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGAGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGAGTCACT  50

seq1  TTCTGAAGAATCTGTGTGCTTCAGAGTAGTTTCTCCCTTTAGAAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGAATCTGTGTGCTTCAGAGTAGTTTCTCCCTTTAGAAAACACA  100

seq1  GGTTCACATCCATTCAGCCCAAGCCAATCATCAACAGACTTGCTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACATCCATTCAGCCCAAGCCAATCATCAACAGACTTGCTTTTTCT  150

seq1  ATGAGTATCGTAAGGCCAAGGTGGAGGACTTCCTGTCTTCTCACTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATCGTAAGGCCAAGGTGGAGGACTTCCTGTCTTCTCACTTTCTT  200

seq1  AAA  203
      |||
seq2  AAA  203