BAC Information

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BAC

Clone NameB6Ng01-016P05
Chromosome3 (Build37)Y (Build37)
Map Location 77,804,932 - 77,805,5711,120,588 - 1,120,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P05.bB6Ng01-016P05.g
ACCDH850771DH850772
length634970
definitionDH850771|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P05, 5' end.DH850772|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,804,932 - 77,805,571)(1,120,588 - 1,120,811)
sequence
gaattcttcctctcctcttcttgcatcttgtctccttgcctctagggaca
tggaagtccttcctgttctttctaaccagcaattggcccatggctttttt
actgacagatcaagagccaattggggaacaatactgtagcatcagaacca
ctcctaccgaccattactaatccccatgaccccaaatagtcactgattca
ctatgtcttccttactgtcccaagtctatgtcatagtattttccttcaca
ttatttccacttcccactctccctccagctcctcctcctcctcctcttcc
tccttctctttttcctttttttcttcttcttccacccctctcacatcatg
cataaccagtactgttcacatactctttaatgcctggtcttctactgaat
tctttttttttaacatgtatttatttatttatttatttatttatttattt
atttatttatttaatgtatgtgaatacactgtcactctcttcagacacac
tagaagaaggcatcagatacctttacagataggtgtgagccacatgtgtt
gcttggaattgaactcagacctcttgagagctagcagtgctcttaaacaa
acaagtagacaaaagtttatggaaaattgagaag
gaattctgcctcctgtgaaaccccagcacacgtgcgcgcacgcgcacaca
ctcacacacacacacatacacacacacacacacacctcagatgcacatat
acatgtatagtcagcccagagagtgtgcatatgaacagaaacatattgct
ttttaaaaattttgcctagcttattttacttaataacttatctttgttgt
aaccattttcttataaataccatattttaatttttttatggctaaataaa
gtccaatgtatttacaattgttattatacactttagtcatttattttttt
aaatatttttattaggtattttcctcatttacatttccaatgatatcccc
cataccctccccccctacctacccactccaactttttggccctggcattc
ccctgtactgaggcatataatgtttacaagtccaaagggcctctctttcc
agtgatggccgattaggccatcttttgatacatatgcagctagagtcaag
agctccggggtactggttagttcataatgttgttgcacctacagggttgc
agatctctttagctccttggatacattctctagctcctccactgggggcc
ctgtgctccatccaattgctgactgtgagcatccacttctgtgtttgcta
ggccccagcatagtctcagaagagacagctatatcacggtccttttggcc
aatgcttgctagtgtatgcaatggtgtcattgtttggaggctaattatgg
gatggatccctggacatggcagtctctagatggtccatccttttgtctca
gcttcaaattttgtctctgtactccttccatgggtgattgtttccaattc
taagaaggggcaaagtgtccacactttggtcttcattctttcttcagttt
catgtgttttgcaaattgtaccttatatctcgctataataagtttctggg
ctattatccacttatcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77804932_77805571
seq2: B6Ng01-016P05.b_42_675

seq1  GAATTCTTCCTCTCCTCTTCTTGCATCTTGTCTCCTTGCCTCTAGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCTCCTCTTCTTGCATCTTGTCTCCTTGCCTCTAGGGACA  50

seq1  TGGAAGTCCTTCCTGTTCTTTCTAACCAGCAATTGGCCCATGGCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCCTTCCTGTTCTTTCTAACCAGCAATTGGCCCATGGCTTTTTT  100

seq1  ACTGACAGATCAAGAGCCAATTGGGGAACAATACTGTAGCATCAGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGATCAAGAGCCAATTGGGGAACAATACTGTAGCATCAGAACCA  150

seq1  CTCCTACCGACCATTACTAATCCCCATGACCCCAAATAGTCACTGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCGACCATTACTAATCCCCATGACCCCAAATAGTCACTGATTCA  200

seq1  CTATGTCTTCCTTACTGTCCCAAGTCTATGTCATAGTATTTTCCTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTTCCTTACTGTCCCAAGTCTATGTCATAGTATTTTCCTTCACA  250

seq1  TTATTTCCACTTCCCACTCTCCCTCCAGCTCCTCCTCCTCCTCCTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCACTTCCCACTCTCCCTCCAGCTCCTCCTCCTCCTCCTCTTCC  300

seq1  TCCTTCTCTTTTTCCTTTTTTTCTTCTTCTTCCACCCCTCTCACATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTTTCCTTTTTTTCTTCTTCTTCCACCCCTCTCACATCATG  350

seq1  CATAACCAGTACTGTTCACATACTCTTTAATGCCTGGTCTTCTACTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAGTACTGTTCACATACTCTTTAATGCCTGGTCTTCTACTGAAT  400

seq1  TCTTTTTTTTTAACATGTATTTATTTATTTATTTATTTATTTATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTAACATGTATTTATTTATTTATTTATTTATTTATTTATTT  450

seq1  ATTTATTTATTTAATGTATGTGAATACACTGTCACTCTCTTCAGACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTAATGTATGTGAATACACTGTCACTCTCTTCAGACACAC  500

seq1  TAGAAGAAGGCATCAGATACCTTTACAGATAGGTGTGAGCCACCATGTGG  550
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TAGAAGAAGGCATCAGATACCTTTACAGATAGGTGTGAGCCA-CATGT-G  548

seq1  TTGCTTGGAATTGAACTCAGGACCTCTTGAAGAGCTAGCAGTGCTCTTAA  600
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTGCTTGGAATTGAACTCA-GACCTCTTG-AGAGCTAGCAGTGCTCTTAA  596

seq1  ACAAACAAGTAGACAAAAGATTAATGGAAAAATTGAGAAG  640
      ||||||||||||||||||| || |||| ||||||||||||
seq2  ACAAACAAGTAGACAAAAG-TTTATGG-AAAATTGAGAAG  634

seq1: chrY_1120588_1120811
seq2: B6Ng01-016P05.g_364_570

seq1  TTTTTTTCCAT-TTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  49
      |||||||  || ||||||||||||||||  ||||||||||||||||||| 
seq2  TTTTTTTAAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGA  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  99
      ||         ||||||||| || |||         ||||| || |||||
seq2  TA---------TCCCCCATACCCTCCC---------CCCCTACCTACCCA  82

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  149
      ||||  |||||||||||||| |||||||||||||| ||||||||| ||||
seq2  CTCCAACTTTTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAATGTTT  132

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  199
       ||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  ACAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCCGATTAGGCCATCTTT  182

seq1  TGATATATATGCAGCTAGAGTCAAG  224
      ||||| |||||||||||||||||||
seq2  TGATACATATGCAGCTAGAGTCAAG  207