BAC Information

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BAC

Clone NameB6Ng01-017F04
Chromosome3 (Build37)
Map Location 83,522,648 - 83,641,610
singlet/doubletdoublet
Overlap geneSfrp2, LOC633522, Tlr2
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
Downstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F04.bB6Ng01-017F04.g
ACCDH851040DH851041
length550999
definitionDH851040|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F04, 5' end.DH851041|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,522,648 - 83,523,202)(83,640,607 - 83,641,610)
sequence
atcatttccagcgtgggctagacactgacctcatttgaatgcctcttaaa
gttgacttgttgcttcctcttatacacttatttaaaggttttcgtttaat
ttaaagcccactaaccacaggaaacagttgcaggggactgaagagatggc
atggtgcttagatatgtgtactgctcttgcagaagactgagctcagatcg
ctgcacccatgttagaaggctcacagccttctgtaactctagcttcaggg
gatcctcctcggaacaattttagtacctgcaatgtacatgtatgtgtccc
ccacctacacacatacatacctaattaaatgtgaaataaaatattttcaa
aaaagcaattgtaggcattatggagaaaaaagtcccaccagaagaaagga
aaagatgcagcaatacaaaaaagaggagagagagagagagagaggaaggg
aagaagggagggagaaagaaagaatgaaagaaagtaagaaagaatgaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagagggagggagggat

gaattcttagacctcagcgaaaatctgatggttgaagaatatttgaagaa
ctcagcctgtaagggagcctggccttctctacaaaccttagttttgagcc
agaatcatttgagatcaatgcaaaaaacaggagagattttgctgactctg
aaaaacctgacctctcttgacatcagcaggaacacttttcatccgatgcc
cgacagctgtcagtggccagaaaagatgcgcttcctgaatttgtccagta
cagggatccgggtggtaaaaacgtgcattcctcagacgctggaggtgttg
gatgttagtaacaacaatcttgactcattttctttgttcttgcctcggct
gcaagagctctatatttccagaaataagctgaaaacactcccagatgctt
cgttgttccctgtgttgctggtcatgaaaatcagagagaatgcagtaagt
actttctctaaagaccaacttggttcttttcccaaactggagactctgga
agcaggcgacaaccactttgtttgctcctgcgaactcctatcctttacta
tggagacgccagctctggctcaaatcctggttgactggccagacagctac
ctgtgtgactctccgcctcgcctgcacggccacaggcttcaggatgcccg
gccctccgtcttggaatgtcaccaggctgcactggtgtctggagtctgct
gtgcccttctcctgttgatcttgctcgtaggtgccctgtgccaccatttc
cacggactgtggtacctgagaatgatgtgggcgtggctccaggccaagag
gaagcccaagaaagctccctgcagggacgtttgctatgatgctttgtttc
ctacagtgagcaggattcccattgggtggagacctcatggtccagcagct
ggagaactctgacccgccctttagctgtgtctcacaagcgggacttcatt
ccgggcaaatggatcattgacacatcatcgattccatcgaaaagagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83522648_83523202
seq2: B6Ng01-017F04.b_47_601

seq1  GAATTCATCATTTCCAGCGTGGGCTAGACACTGACCTCATTTGAATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTCCAGCGTGGGCTAGACACTGACCTCATTTGAATGCCT  50

seq1  CTTAAAGTTGACTTGTTGCTTCCTCTTATACACTTATTTAAAGGTTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTGACTTGTTGCTTCCTCTTATACACTTATTTAAAGGTTTTCG  100

seq1  TTTAATTTAAAGCCCACTAACCACAGGAAACAGTTGCAGGGGACTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAAAGCCCACTAACCACAGGAAACAGTTGCAGGGGACTGAAGA  150

seq1  GATGGCATGGTGCTTAGATATGTGTACTGCTCTTGCAGAAGACTGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATGGTGCTTAGATATGTGTACTGCTCTTGCAGAAGACTGAGCTC  200

seq1  AGATCGCTGCACCCATGTTAGAAGGCTCACAGCCTTCTGTAACTCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGCTGCACCCATGTTAGAAGGCTCACAGCCTTCTGTAACTCTAGCT  250

seq1  TCAGGGGATCCTCCTCGGAACAATTTTAGTACCTGCAATGTACATGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGATCCTCCTCGGAACAATTTTAGTACCTGCAATGTACATGTATG  300

seq1  TGTCCCCCACCTACACACATACATACCTAATTAAATGTGAAATAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCCACCTACACACATACATACCTAATTAAATGTGAAATAAAATAT  350

seq1  TTTCAAAAAAGCAATTGTAGGCATTATGGAGAAAAAAGTCCCACCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAAGCAATTGTAGGCATTATGGAGAAAAAAGTCCCACCAGAAG  400

seq1  AAAGGAAAAGATGCAGCAATACAAAAAAGAGGAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGATGCAGCAATACAAAAAAGAGGAGAGAGAGAGAGAGAGAG  450

seq1  GAAGGGAAGAAGGGAGGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  500
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GAAGGGAAGAAGGGAGGGAGAAAGAAAGAATGAAAGAAAGTAAGAAAGAA  500

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGGAGGG  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGGAGGG  550

seq1  AGGGA  555
      |||||
seq2  AGGGA  555

seq1: chr3_83640607_83641610
seq2: B6Ng01-017F04.g_67_1065 (reverse)

seq1  TGGCTCTTTTCGATGGAATCGATGATGTTGTCAATGATCCATTTGCCCGG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGCTCTTTTCGATGGAATCGATGATG-TGTCAATGATCCATTTGCCCGG  49

seq1  AACGAAGTCCCGCTTGTGGAGACACAGCTTAAAGGGCGGGTCAGAGTTCT  100
      || |||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AATGAAGTCCCGCTTGT-GAGACACAGC-TAAAGGGCGGGTCAGAGTTCT  97

seq1  CCAGCTGCTGGACCATGAGGTTCTCCACCCAATGGGAATCCTGCTCACTG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGCTGCTGGACCATGAGG-TCTCCACCCAATGGGAATCCTGCTCACTG  146

seq1  TAGGAAACAAAGGCATCATAGCAAACGTCCCTGCAGGGAGCTTTCTTGGG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACAAA-GCATCATAGCAAACGTCCCTGCAGGGAGCTTTCTTGGG  195

seq1  CTTCCTCTTGGCCTGGAGCCACGCCCACATCATTCTCAGGTACCACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTGGCCTGGAGCCACGCCCACATCATTCTCAGGTACCACAGTC  245

seq1  CGTGGAAATGGTGGCACAGGGCACCTACGAGCAAGATCAACAGGAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAATGGTGGCACAGGGCACCTACGAGCAAGATCAACAGGAGAAGG  295

seq1  GCACAGCAGACTCCAGACACCAGTGCAGCCTGGTGACATTCCAAGACGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGACTCCAGACACCAGTGCAGCCTGGTGACATTCCAAGACGGA  345

seq1  GGGCCGGGCATCCTGAAGCCTGTGGCCGTGCAGGCGAGGCGGAGAGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGGCATCCTGAAGCCTGTGGCCGTGCAGGCGAGGCGGAGAGTCAC  395

seq1  ACAGGTAGCTGTCTGGCCAGTCAACCAGGATTTGAGCCAGAGCTGGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGCTGTCTGGCCAGTCAACCAGGATTTGAGCCAGAGCTGGCGTC  445

seq1  TCCATAGTAAAGGATAGGAGTTCGCAGGAGCAAACAAAGTGGTTGTCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTAAAGGATAGGAGTTCGCAGGAGCAAACAAAGTGGTTGTCGCC  495

seq1  TGCTTCCAGAGTCTCCAGTTTGGGAAAAGAACCAAGTTGGTCTTTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGAGTCTCCAGTTTGGGAAAAGAACCAAGTTGGTCTTTAGAGA  545

seq1  AAGTACTTACTGCATTCTCTCTGATTTTCATGACCAGCAACACAGGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTACTGCATTCTCTCTGATTTTCATGACCAGCAACACAGGGAAC  595

seq1  AACGAAGCATCTGGGAGTGTTTTCAGCTTATTTCTGGAAATATAGAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGCATCTGGGAGTGTTTTCAGCTTATTTCTGGAAATATAGAGCTC  645

seq1  TTGCAGCCGAGGCAAGAACAAAGAAAATGAGTCAAGATTGTTGTTACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCGAGGCAAGAACAAAGAAAATGAGTCAAGATTGTTGTTACTAA  695

seq1  CATCCAACACCTCCAGCGTCTGAGGAATGCACGTTTTTACCACCCGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAACACCTCCAGCGTCTGAGGAATGCACGTTTTTACCACCCGGATC  745

seq1  CCTGTACTGGACAAATTCAGGAAGCGCATCTTTTCTGGCCACTGACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGGACAAATTCAGGAAGCGCATCTTTTCTGGCCACTGACAGCT  795

seq1  GTCGGGCATCGGATGAAAAGTGTTCCTGCTGATGTCAAGAGAGGTCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGCATCGGATGAAAAGTGTTCCTGCTGATGTCAAGAGAGGTCAGGT  845

seq1  TTTTCAGAGTCAGCAAAATCTCTCCTGTTTTTTGCATTGATCTCAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGTCAGCAAAATCTCTCCTGTTTTTTGCATTGATCTCAAATGA  895

seq1  TTCTGGCTCAAAACTAAGGTTTGTAGAGAAGGCCAGGCTCCCTTACAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCAAAACTAAGGTTTGTAGAGAAGGCCAGGCTCCCTTACAGGC  945

seq1  TGAGTTCTTCAAATATTCTTCAACCATCAGATTTTCGCTGAGGTCTAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTTCAAATATTCTTCAACCATCAGATTTTCGCTGAGGTCTAAGA  995

seq1  ATTC  1004
      ||||
seq2  ATTC  999