BAC Information

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BAC

Clone NameB6Ng01-017G04
Chromosome3 (Build37)X (Build37)
Map Location 46,627,894 - 46,629,15376,275,880 - 76,276,436
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017G04.bB6Ng01-017G04.g
ACCDH851087DH851088
length1,235934
definitionDH851087|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G04, 5' end.DH851088|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,627,894 - 46,629,153)(76,275,880 - 76,276,436)
sequence
gaattcatcatactaggctttaataaacacctactttcttatctctactt
tttcatagaatgcaggttggcagcaatagagatcacccccctgaatttta
ctgaaacaagtctcttctctctctgcacatctattatcatttgttaaagc
ttggatgatataaatttggtaaatctcatgtgcttatgctaccagatctg
tgctcatttattaagaaacaaatatatcttgcttaatatacaaattagaa
atatatatttgcaattattatcaacttttttatcattaccatcatcatca
actggagtctaaaatgtagttcaggaataaataaaatgttgtttaataga
ataatttatattttataaaacattttatattataattgtaccacatattt
ttcctcagttagcaccatgtgtgtaatatcaatggatccaaagggtctat
aaataatataccacataactcctaagaaaaaaattatactctcttatttt
ttttctcagtttattttaaatataggtaaaatttttactattactctggt
aaattttgaagaatgttaacattagttttgaactaacaagaaacactaag
actgcattttataaaaataggattattcatttacctattaaaataattaa
gaagcagtagatgttaggttatataactccttttgatttatattaatctg
gtaaatgatttgttacttgaaaatattagttttattaatattccatgaaa
atgagatggtagataagactcttaaattagaaaaaaatcactttgtatgt
tacatatttttcatgttacactgctatcctttataaattgtaaaaaccta
tgcaaggtgcttcctgtcaaaagaaacaaaatttatatatgcaacaagca
gttcagaaaaagatattgattctccagtttgtcatagacatttatcttag
aattttttctatttacagaactattttatatcacacattatataaagtta
tatacaaatatatacaaattagtattttgtgtgtatgactgtagtatttg
gctatatctgaaatacaaacaaaaggaattgattatggtgtcattagtct
ggatggatggatcagtcacattcccttgagctttttcttcggaatggggg
atgctggatctccttattctgcatacccgcagtaagcggactgtgatcgg
tgtgaataatatactctgttttagcgctaaagaag
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaccgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagacctgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggggatatgggactgtttagaaggtcaacttgatcctgattcaact
ttggtacctggtatctgtccagaaatttgtccatttcgtcccggttttcc
agttttgttgagtataagcttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttga
ttaggattttgtccctttgccctctagtgagtctagctaagggcttatct
atcttgatgattttctcaaagaaccaactcctcatttggttaattctttg
gatagttcctctttgtttccacttgggtaatttcacccctgagtttgatt
attttcctgccgtatactcctctggtgatttgcttcctttttttctagag
ttttagatgtgtgtcaagctgctagtatggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46627894_46629153
seq2: B6Ng01-017G04.b_48_1282

seq1  GAATTCATCATACTAGGCTTTAATAAACACCTACTTTCTTATCTCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATACTAGGCTTTAATAAACACCTACTTTCTTATCTCTACTT  50

seq1  TTTCATAGAATGCAGGTTGGCAGCAATAGAGATCACCCCCCTGAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGAATGCAGGTTGGCAGCAATAGAGATCACCCCCCTGAATTTTA  100

seq1  CTGAAACAAGTCTCTTCTCTCTCTGCACATCTATTATCATTTGTTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAAGTCTCTTCTCTCTCTGCACATCTATTATCATTTGTTAAAGC  150

seq1  TTGGATGATATAAATTTGGTAAATCTCATGTGCTTATGCTACCAGATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGATATAAATTTGGTAAATCTCATGTGCTTATGCTACCAGATCTG  200

seq1  TGCTCATTTATTAAGAAACAAATATATCTTGCTTAATATACAAATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTATTAAGAAACAAATATATCTTGCTTAATATACAAATTAGAA  250

seq1  ATATATATTTGCAATTATTATCAACTTTTTTATCATTACCATCATCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTGCAATTATTATCAACTTTTTTATCATTACCATCATCATCA  300

seq1  ACTGGAGTCTAAAATGTAGTTCAGGAATAAATAAAATGTTGTTTAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTCTAAAATGTAGTTCAGGAATAAATAAAATGTTGTTTAATAGA  350

seq1  ATAATTTATATTTTATAAAACATTTTATATTATAATTGTACCACATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATATTTTATAAAACATTTTATATTATAATTGTACCACATATTT  400

seq1  TTCCTCAGTTAGCACCATGTGTGTAATATCAATGGATCCAAAGGGTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGTTAGCACCATGTGTGTAATATCAATGGATCCAAAGGGTCTAT  450

seq1  AAATAATATACCACATAACTCCTAAGAAAAAAATTATACTCTCTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATACCACATAACTCCTAAGAAAAAAATTATACTCTCTTATTTT  500

seq1  TTTTCTCAGTTTATTTTAAATATAGGTAAAATTTTTACTATTACTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGTTTATTTTAAATATAGGTAAAATTTTTACTATTACTCTGGT  550

seq1  AAATTTTGAAGAATGTTAACATTAGTTTTGAACTAACAAGAAACACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGAAGAATGTTAACATTAGTTTTGAACTAACAAGAAACACTAAG  600

seq1  ACTGCATTTTATAAAAATAGGATTATTCATTTACCTATTAAAATAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTTATAAAAATAGGATTATTCATTTACCTATTAAAATAATTAA  650

seq1  GAAGCAGTAGATGTTAGGTTATATAACTCCTTTTGATTTATATTAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTAGATGTTAGGTTATATAACTCCTTTTGATTTATATTAATCTG  700

seq1  GTAAATGATTTGTTACTTGAAAATATTAGTTTTATTAATATTCCATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGATTTGTTACTTGAAAATATTAGTTTTATTAATATTCCATGAAA  750

seq1  ATGAGATGGTAGATAAGACTCTTAAATTAGAAAAAAATCACTTTGTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGTAGATAAGACTCTTAAATTAGAAAAAAATCACTTTGTATGT  800

seq1  TACATATTTTTCATGTTACACTGCTATCCTTTATAAATTGTAAAAACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTTTCATGTTACACTGCTATCCTTTATAAATTGTAAAAACCTA  850

seq1  TGCAAGGTGCTTCCTGTCAAAAGAAACAAAATTTATATATGCAACAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTGCTTCCTGTCAAAAGAAACAAAATTTATATATGCAACAAGCA  900

seq1  GTTCAGAAAAAGATATTGATTCTCCAGTTTGTCATAGACATTTATCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAAAAGATATTGATTCTCCAGTTTGTCATAGACATTTATCTTAG  950

seq1  AATTTTTTCTATTTACAGAACTATTTTTATTATCACCACATTATATAAAG  1000
      |||||||||||||||||||||||||||   ||||| ||||||||||||||
seq2  AATTTTTTCTATTTACAGAACTATTTT--ATATCA-CACATTATATAAAG  997

seq1  TTATATTACAAATATATACAAAATTAGTATTTTGTGTGTTATGAACTTGT  1050
      ||||| ||||||||||||| |||||||||||||||||| |||||   |||
seq2  TTATA-TACAAATATATAC-AAATTAGTATTTTGTGTG-TATGA--CTGT  1042

seq1  AGTATTTGGCTATATCTGAAATACAAACAAAAGGAAAATGATTTAATGTG  1100
      |||||||||||||||||||||||||||||||||| || |||||  |||  
seq2  AGTATTTGGCTATATCTGAAATACAAACAAAAGG-AATTGATT--ATGGT  1089

seq1  TTCATTAGTTCTGATTGGTATGAATCAGTCACATTTCCCTTTGAGCTTTT  1150
       ||||||| ||||  ||| ||| ||||||||||||  || ||||||||||
seq2  GTCATTAG-TCTGGATGG-ATGGATCAGTCACATT--CCCTTGAGCTTTT  1135

seq1  TCTTTCGGTATTGGGGATGCTGGATCTCCTTTATATCTGCATATACTCAG  1200
      || ||||| || ||||||||||||||||| |||| ||||||||  | |||
seq2  TC-TTCGGAATGGGGGATGCTGGATCTCC-TTAT-TCTGCATACCCGCAG  1182

seq1  CAAGGATAAGCAGAACTAGAAATCGGGTGTGAATAAATT--TCTGTTTTA  1248
            ||||| | ||| |  ||| |||||||||||  |  |||||||||
seq2  ------TAAGC-GGACT-GTGATC-GGTGTGAATAATATACTCTGTTTTA  1223

seq1  GGCTTAAAGAAG  1260
      |   ||||||||
seq2  GCGCTAAAGAAG  1235

seq1: chrX_76275880_76276436
seq2: B6Ng01-017G04.g_447_1000 (reverse)

seq1  AGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAA  50
      ||||| ||||||||||||||||| |||||||||||| |||||||||||||
seq2  AGAGC-CATACTAGCAGCTTGAC-ACACATCTAAAA-CTCTAGAAAAAAA  47

seq1  GGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGG-AAATAATCAAACTC  99
      ||||||||| |||||  ||||||||| |||||||| ||||||||||||||
seq2  GGAAGCAAA-TCACC--AGAGGAGTATACGGCAGGAAAATAATCAAACTC  94

seq1  AGGGGTGAAATTAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTA  148
      ||||||||||||| |||||||||||| |||| ||||||| ||||||||||
seq2  AGGGGTGAAATTACCCAAGTGGAAACAAAGAGGAACTATCCAAAGAATTA  144

seq1  ACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAGCCC  198
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCAAATGAGGAGTTGGTTCTTTGAGAAAATCATCAAGATAGATAAGCCC  194

seq1  TTAGCTAGACTCACTAGAGGGCAAAGGGACAAAATCCTAATCAACAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGACTCACTAGAGGGCAAAGGGACAAAATCCTAATCAACAAAAT  244

seq1  CAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACA  294

seq1  CCATCAGATCCTTCTACAAAAGCTTATACTCAACAAAACTGGAAAACCTG  348
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATCAGATCCTTCTACAAAAGCTTATACTCAACAAAACTGGAAAACCGG  344

seq1  GACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCA  394

seq1  GGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAG  444

seq1  CAGTTATTAATAGTCTCCCAGCC-AAAAAAAGCCCAGGACCAGATGGGTT  497
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTTATTAATAGTCTCCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTT  494

seq1  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGC  547
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGGTCTGC  544

seq1  ACAAACTATT  557
      ||||||||||
seq2  ACAAACTATT  554