BAC Information

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BAC

Clone NameB6Ng01-017H20
Chromosome3 (Build37)
Map Location 41,058,637 - 41,059,397
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H20.bB6Ng01-017H20.g
ACCDH851160DH851161
length9641,109
definitionDH851160|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H20, 5' end.DH851161|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttaatccacttagatttgaccttagtataaggagataggaatg
aatcaatttgcattcttctacatgataaccaccagttgtgccagcaccat
ttgttgaaaatgctgttttttttttttcccccactggatggtttttgctc
ccttgtcaaagaccaagtaaccataggtgtgtgggttcatttctgggtct
taaattctaatccattggtctacttgtctgtcactataccagtaccatgc
agtttttatcacaattgctctgtagtacagctttaggtcaggcatggtga
ttccaccggattttttttttttatccttgagcagagtgtttgctatccta
ggttttttgttattccagatgaatttgcagattgttctttctaattcatt
gaagaattgagttggaattttgatggggattgcattgaatctgtagattg
cttttagcaaaatagccatttttactatattgatcctgccaatccatgag
catgggagatctttacatcttctgcgatcttctttaatttctttcttcag
agacttgaagttcttatcatacagatctttcacttcctttgttagagtta
tgacagtgtattttatattatttttgactattcagaaggtcgttgtttcc
ctaatttctttctcagcctgtttatcctttgtgtacagaaaggtcattga
cttgtttgagttaattttatatccagctacttcattgaagctgtttatca
agtttaggagttctctggtggaatataaccacagctttttacttaaaatt
atgtcaatattattatctcatattgcatgtcattctgtagtccatctcat
atctgcctttttgagtgtcctgtaaaaaaaattctattaaaagttgatgc
aatcattcagttatttaagttctttattttgctgggatttcactttcatt
atggttattttttt
gaattcctagccagagcaaatagacaacaaaaggcaatcaaagagataca
aattggaaaggaagaagtcaaaatatcactatgtgagatgatatgatagt
ataaacaagtgaccccaaaaatttcaccagagaacccctaaacctgataa
acaacttcagtgaagtagctagatataaaattaactcaaacaaatcattg
gcctttctccacacaaaggataaacaggctgagaaagaaattagggaaaa
acagacttcaaaatagtcacaaatagcataaaataccctggtgtgacact
aaccaaggaagtgaaatatctatatgataagaacttcaagtctctgaaga
aagaaatcgaatatctcagaaagtggaaagatatcccttgctcatgtatt
cgcaggttaatatagtcaaaatggctatcttgccgaaagcattacacaga
ctcaatgcaatccccatcaaaagttcaactcaatttttcacagagttaga
aatgacaatttgcaaattcatctggaataacaaaaaaacctaggatagta
aaaactgttctcaacaataaaagaacctctggtggaatctctatgcctga
ccttaagctgtactacagagcaattgtgattaaaaactacatggtactag
tacactgacagacaggtacatcaatggaatagaattgaagacccagaaat
gaacccatatacctatggtcacttgatctttgacaaaggagctaaaacca
tccagtggaaagaagacagcatcttcaaccaatggtgctggctcaactgg
aagttattatgtagaggaatgcaaattgatccattcttatcctccttggt
cagttctaagtggatcaaggaatttcccattaaccaaagacactgaagca
tataaaggaaaagtggtgagaagccttgaagatatggggcacagggaaag
aatcctgaacagacagggattgctttgtgcttctagatcagaatcaacaa
tgggaccttataaaatggctaagcttcgtaagggaaggaacctggtcgta
gataatggcacacagatggggaagatctttaccaatctaagtttatgggc
tatatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058637_41059397
seq2: B6Ng01-017H20.b_44_814 (reverse)

seq1  ATTCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTCGGTGAAGTAGCT  50
      ||||||||||||||||||||| | ||||||||||||||  ||||||||||
seq2  ATTCCACCAGAGAACTCCTAAACTTGATAAACAGCTTCAATGAAGTAGCT  50

seq1  GGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAA  100
      |||||||||||||||||||||||||||||| ||||||| ||||||||| |
seq2  GGATATAAAATTAACTCAAACAAGTCAATGACCTTTCTGTACACAAAGGA  100

seq1  TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCA  150
      |||||||||||||||||||||||||||||||||  |||||| ||||||||
seq2  TAAACAGGCTGAGAAAGAAATTAGGGAAACAACGACCTTCTGAATAGTCA  150

seq1  CAAATAATATAAAATATCTTGGCATGACTCTAACTAAGGAAGTGAAAGAT  200
       |||||||||||||||   || ||| |||||||| |||||||||||||||
seq2  AAAATAATATAAAATACACTGTCATAACTCTAACAAAGGAAGTGAAAGAT  200

seq1  CTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCG  250

seq1  CAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTG  300
      ||||||||| ||||||||||||||||||||||||||||||||||| || |
seq2  CAGAAGATGTAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAG  300

seq1  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  350
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  TAAAAATGGCTATTTTGCTAAAAGCAATCTACAGATTCAATGCAATCCCC  350

seq1  ATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAA  400
      |||||||||||||||||||||||||| ||||| |||||| ||||||||||
seq2  ATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAAGAACAATCTGCAA  400

seq1  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGG  450
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAACACTCTGCTCAAGG  450

seq1  AT---AACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC  497
      ||   || | ||  || ||||||||||||||||||||||||||||| |||
seq2  ATAAAAAAAAAAAATCCGGTGGAATCACCATGCCTGACCTAAAGCTGTAC  500

seq1  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACA  550

seq1  AGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCT  597
      || ||||||||||| ||||||| ||||| |||||| ||| ||||||||||
seq2  AGTAGACCAATGGATTAGAATTTAAGACCCAGAAATGAACCCACACACCT  600

seq1  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG------  641
      ||||| ||||| |||| ||||||||||| |||||||||||||||      
seq2  ATGGTTACTTGGTCTTTGACAAGGGAGCAAAAACCATCCAGTGGGGGAAA  650

seq1  -AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAT  690
       |||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAAAAAACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTAT  700

seq1  CATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTC  740
      ||||||||||||||| ||||||| || |||||||||||| ||||||||||
seq2  CATGTAGAAGAATGCAAATTGATTCATTCCTATCTCCTTATACTAAGGTC  750

seq1  AAATCTAAGTGGATCAAGGAA  761
      |||||||||||||| ||||||
seq2  AAATCTAAGTGGATTAAGGAA  771