BAC Information

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BAC

Clone NameB6Ng01-017H21
Chromosome3 (Build37)
Map Location 8,047,122 - 8,214,918
singlet/doubletdoublet
Overlap geneLOC633072
Upstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
Downstream geneLOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H21.bB6Ng01-017H21.g
ACCDH851162DH851163
length811644
definitionDH851162|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H21, 5' end.DH851163|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,214,110 - 8,214,918)(8,047,122 - 8,047,765)
sequence
gaattcacctttgctgttgatgctcagatatgatccctgccggcaatgtg
ctgtttgttttcactcaggtgcataaccagggggaggagagcttcgacca
ggattctgggtgcggacaggggcctgcatctgggctcaggggcttagtag
atggtatttatattccctgcaaactcctgcctgggcactctaggtaggga
aaggaactattgtggtttctgtcttgggataacagtagtatctcaagtct
tttcataattgagtttctatccaaaatgtcaattgctttgtccagatcat
cttggcttttcaacaggatggagagctctttatccatataatgcaaatca
agaggctgcccaaagactcttatcaccctgtgcaccacatcttcatattt
tataggccaaactgttataatttgtctctccccattgcgttgacacttaa
ttctgacctccctctgcctgtttgggtgacctgtgtccttgttctttggg
gtcgcatatccggacacccggggaagtccgctcatctggagagccaccag
gtccttcatgtttgaatctaatgcttcgtgtatatccctggtgctgatga
tgccagcaactaaaacccaatttttttacctccgcaaccggaactgcatg
caagaagagcatgtggacgggacagcacaggatctggctctacactggcg
ccctaggctggactggcttagattgggaccccacctcctacctgggcctc
ggtggcgccactcactgccatatccctggctctacccaataatcaaagtt
gctccgagcag
gaattcatatgtggaaatatctattacatgtgcaaagtaaattattggtt
aaggtattactaaagtatttatggtatcaatacctacctctatctttgcc
aatggtaggtaaataatattatgtgtgtacaaccattcagaagtaataaa
tgtatgttataatgggctttatgaagtattaattttaggtacatataata
gatatccaaataattttagaatatcttatatttcacatatgttgaaagtg
cagagagaatatcttgtgtattgtatggatgcatcacctgtcaactacaa
atcctaaacctatggtttaaacaggaaatagaggtgagaaatacagaaga
aaaaagaattctgagatagaatcaggtggcagattgttctgggaaaatgt
aaagaaatggacacaaggtacctgagcagaggcaaccagctatgtgcggg
aatgtaggttaaaatcagtgtgctatctttattcatcatctagtaaaaga
agggcctagtgaatggccaaggtattttaaatatgttttaaatctgagtc
ttatttctgggagcatggtgctgggaggaagaactgggacctatcttcta
cagaaaaaaaatgtatatttggatgggttggaatgtagggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_8214110_8214918
seq2: B6Ng01-017H21.b_32_842 (reverse)

seq1  CTGCTCGGAGCAACTTCTCGACTTCAGGATTGGCAGGCTGGT-TGGC--C  47
      ||||||||||||||||      ||  | |  | ||||  | | ||||   
seq2  CTGCTCGGAGCAACTTTGATTATTGGGTAGAGCCAGG--GATATGGCAGT  48

seq1  GAGTGGCGCCAACGAGG-CCAGGGAGGCTGTGGGGTCCCAAGCAAAGCCA  96
      ||||||||||| ||||| ||||| |||  |||||||||||| | ||||||
seq2  GAGTGGCGCCACCGAGGCCCAGGTAGGAGGTGGGGTCCCAATCTAAGCCA  98

seq1  GCGCAGCCTATGGCCCCAGTGTAGAGCCAGATCCTCTGCTGTCCCCGCTG  146
      |  ||||||| ||| |||||||||||||||||||| |||||||||  |  
seq2  GTCCAGCCTAGGGCGCCAGTGTAGAGCCAGATCCTGTGCTGTCCCGTCCA  148

seq1  ACTGCTCCCCTCGCATGCAGTTCCGGCTGCGGAGGTGAAACTTTTGGGTT  196
        |||||  || |||||||||||||| ||||||||| |||   |||||||
seq2  CATGCTCTTCTTGCATGCAGTTCCGGTTGCGGAGGTAAAAAAATTGGGTT  198

seq1  GTAGCTGCTGCCACCATCACCACCATGGATGAACAAGAAGCATTAGATTC  246
       ||| ||||| || ||||| ||||| ||||  ||| ||||||||||||||
seq2  TTAGTTGCTGGCATCATCAGCACCAGGGATATACACGAAGCATTAGATTC  248

seq1  AAACACGAAGGACCTGGTGGCTCTCCAGATGAGCGGACCTCCCCGGGTGT  296
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACATGAAGGACCTGGTGGCTCTCCAGATGAGCGGACTTCCCCGGGTGT  298

seq1  CTGGATATGAGACCACAAAGAACAAGGACACAGGTCACCCAAACAGGCAG  346
      | ||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  CCGGATATGCGACCCCAAAGAACAAGGACACAGGTCACCCAAACAGGCAG  348

seq1  AGTGATGTCAGAATCAAGTGTCAACACAATGGGGAGAGACAAATTATAAC  396
      || || |||||||| |||||||||| ||||||||||||||||||||||||
seq2  AGGGAGGTCAGAATTAAGTGTCAACGCAATGGGGAGAGACAAATTATAAC  398

seq1  AGTCTGGCCTATAAAATATGAAGATGTGGTGCACAGGGTGATAAGAGTCT  446
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCCTATAAAATATGAAGATGTGGTGCACAGGGTGATAAGAGTCT  448

seq1  TTGGGCAGCCTCTTGATTTGCATTATATGGATAAAGAGCTCTCCATCCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGCCTCTTGATTTGCATTATATGGATAAAGAGCTCTCCATCCTG  498

seq1  TTGAAAAGCCAAGATGATCTCGACAAAGCAATTGACATTTTGGATAGAAA  546
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAAAAGCCAAGATGATCTGGACAAAGCAATTGACATTTTGGATAGAAA  548

seq1  CTCAATTATGAAAAGACTTACGATACTACTGTTATCCCAAGACAGAAACC  596
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CTCAATTATGAAAAGACTTGAGATACTACTGTTATCCCAAGACAGAAACC  598

seq1  ACACTAGTTCCTCTCCCTACCTAGAGTGCCCAGGCAGGAGTCTGCAGGGA  646
      ||| |||||||| |||||||||||||||||||||||||||| ||||||||
seq2  ACAATAGTTCCTTTCCCTACCTAGAGTGCCCAGGCAGGAGTTTGCAGGGA  648

seq1  ATATAAATACCATCTACTAAGCCCCTGAGCCCAGAAGCAGGCACCTGTCC  696
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ATATAAATACCATCTACTAAGCCCCTGAGCCCAGATGCAGGCCCCTGTCC  698

seq1  GCACCCAGAATCCTGGTCGAAGCTCTCCTCCCCCTGGTTATGTACCTGAG  746
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCACCCAGAATCCTGGTCGAAGCTCTCCTCCCCCTGGTTATGCACCTGAG  748

seq1  CGAAAACAAACAGCACATTGCCGGCAGGGATCATATATGAGCATCAACAG  796
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAAAACAAACAGCACATTGCCGGCAGGGATCATATCTGAGCATCAACAG  798

seq1  TAAAGGTGAATTC  809
       ||||||||||||
seq2  CAAAGGTGAATTC  811

seq1: chr3_8047122_8047765
seq2: B6Ng01-017H21.g_65_708

seq1  GAATTCAAATGTGGAAATATCTATTACATGTGCAAAGTAAATTATTGGTT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTGGAAATATCTATTACATGTGCAAAGTAAATTATTGGTT  50

seq1  AAGGTATTACTAAAGTATTTATGGTATCAATACATACATCTATCTTTGCC  100
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  AAGGTATTACTAAAGTATTTATGGTATCAATACCTACCTCTATCTTTGCC  100

seq1  AATGGTAGGTAAATAATATTATGTGTGTACAACCATTCAGAAGTAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGGTAAATAATATTATGTGTGTACAACCATTCAGAAGTAATAAA  150

seq1  TGTATGTTATAATGTGCTTTATAAGGTATTAATTTTAGGTACATATAATA  200
      |||||||||||||| ||||||| | |||||||||||||||||||||||||
seq2  TGTATGTTATAATGGGCTTTATGAAGTATTAATTTTAGGTACATATAATA  200

seq1  GATATCCAAATAATTTTAGAATATCTTATATTTCAGATATGTTGAAAGTG  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATATCCAAATAATTTTAGAATATCTTATATTTCACATATGTTGAAAGTG  250

seq1  CAGAGAGAATATCTTGTGTATTGTATGGATGCATCACCTGTCAACTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAATATCTTGTGTATTGTATGGATGCATCACCTGTCAACTACAA  300

seq1  ATCCTAAACCTATGGTTTAAACAGGAAATAGAGGTGAGAAATACAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAACCTATGGTTTAAACAGGAAATAGAGGTGAGAAATACAGAAGA  350

seq1  AAAAAGAATTCTGAGATAGAATCAGGTGGCAGATTGTTCTGGGAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATTCTGAGATAGAATCAGGTGGCAGATTGTTCTGGGAAAATGT  400

seq1  AAAGAAATGGACACAAGGTACCTGAGCAGAGGCAACCAGCTATGTGCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGGACACAAGGTACCTGAGCAGAGGCAACCAGCTATGTGCGGG  450

seq1  AATGTAGGTTAAAATCAGTGTGCTATCTTTATTCATCATCTAGTAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGTTAAAATCAGTGTGCTATCTTTATTCATCATCTAGTAAAAGA  500

seq1  AGGGCCTAGTGAATGGCCAAGGTATTTTAAATATGTTTTAAATCTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAGTGAATGGCCAAGGTATTTTAAATATGTTTTAAATCTGAGTC  550

seq1  TTATTTCTGGGAGCATGGTGCTGGGAGGAAGAACTGGGACCTATCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGGGAGCATGGTGCTGGGAGGAAGAACTGGGACCTATCTTCTA  600

seq1  CAGAAAAAAAATGTATATTTGGATGGGTTGGAATGTAGGGAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAATGTATATTTGGATGGGTTGGAATGTAGGGAGGA  644